Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo02g01022 ATGGAGGAGAAAGAGGGTGTTGATTTCGGATTTGCATTAAAAGTGAGCCAAGCTTCAGATAGCTTCGGGATGATGGATTCGAGACCTGAAAATACAAGCACGGACAGCGAGCCACCTCCTCCGCCTCCGCCGCCGACGACGGCGACGGTGGAAGCAGCTCAGACGCTGGCGGGTACAGATGGAAAGAAGAAAAGAGGGAGGCCGAGAAAGTACGGACCCGATGGGACTGTAGTGCCAACATTGTCGCCAATGCCGATTTCATCATCGATTCCGTTGACGGGAGAGTTTCCGGGATGGAAACGGGGAAGGGGGAGGTCAGTAGAATCGCTCAAGAAGTCGCGGAAGTACGATTATGAGATTCCAGGTAACAAGGTTGCCTTCTTTGCTGGAGCAGATTTCACACCTCACGTGATCACTGTTAATATTGGTGAGGATGTTAACTTGAAAGTAATGTCATTTTCTCAACAAGGATCTCGGGCCATTTGTATACTCTCTGCTAATGGTATGGTTTCAAATGTCACACTTCGGCAGTCAACATCTTCGGGGGGTACTCTAACATATGAGGGTCGATTTGAGATACTTTCGTTATCTGGATCATATATGCCTTCCGAGATTGGTGGAACAAAGAGCCGATCTGGAGGGATGAGTGTCTCTTTAGCTTGCCCAGATGGCCGAGTAATGGGTGGAGGACTTTCCGGCATGCTAATAGCAGCTGGTCCAGTGCAGGTGGTGGTGGGCAGTTTCCAACCACCAGGCCACCAACAGGAGAATAAACCAAAGAAGAGCAGGATGGAACCTACATCAAATGCAATTTCACCTCCTCCCGCCATTAAGCCCATAGGAGATAAAGCAGATTCTTTAGACCCAAATCCAGCTTTTAGAACTTCACCAGTCGACGAAAAACCACCTTCTCCAGAAGAATCAAGAGTTGTCCTCAACCATTCAAACCATGAGCGGTATGAGCTCATTGATTCTGTGAAGGTATGA 987 48.63 MEEKEGVDFGFALKVSQASDSFGMMDSRPENTSTDSEPPPPPPPPTTATVEAAQTLAGTDGKKKRGRPRKYGPDGTVVPTLSPMPISSSIPLTGEFPGWKRGRGRSVESLKKSRKYDYEIPGNKVAFFAGADFTPHVITVNIGEDVNLKVMSFSQQGSRAICILSANGMVSNVTLRQSTSSGGTLTYEGRFEILSLSGSYMPSEIGGTKSRSGGMSVSLACPDGRVMGGGLSGMLIAAGPVQVVVGSFQPPGHQQENKPKKSRMEPTSNAISPPPAIKPIGDKADSLDPNPAFRTSPVDEKPPSPEESRVVLNHSNHERYELIDSVKV 328
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 6215634 6220449 + CmoCh02G010220.1 Cmo02g01022 376619
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo02g01022 328 Pfam Plants and Prokaryotes Conserved (PCC) domain 135 249 IPR005175 -
Cmo02g01022 328 ProSiteProfiles PPC domain profile profile. 130 269 IPR005175 -
Cmo02g01022 328 MobiDBLite consensus disorder prediction 1 86 - -
Cmo02g01022 328 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 3 9 275 - -
Cmo02g01022 328 SUPERFAMILY AF0104/ALDC/Ptd012-like 132 261 - -
Cmo02g01022 328 MobiDBLite consensus disorder prediction 34 48 - -
Cmo02g01022 328 Gene3D - 135 265 - -
Cmo02g01022 328 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 9 275 IPR039605 GO:0003680
Cmo02g01022 328 MobiDBLite consensus disorder prediction 300 316 - -
Cmo02g01022 328 MobiDBLite consensus disorder prediction 246 316 - -
Cmo02g01022 328 CDD DUF296 134 248 IPR005175 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo02g01022 Cmo18g01215 CCT
Cmo02g01022 Cmo18g01215 ECH
Cmo02g01022 Cmo15g01287 CST
Cmo02g01022 Cmo15g01444 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo02g01022 Cmo-Chr2:6215634 Cmo14g02040 Cmo-Chr14:14913849 1.48E-81 dispersed
Cmo03g01172 Cmo-Chr3:9211798 Cmo02g01022 Cmo-Chr2:6215634 6.19E-18 dispersed
Cmo17g00404 Cmo-Chr17:2679899 Cmo02g01022 Cmo-Chr2:6215634 1.87E-65 dispersed
Cmo15g01444 Cmo-Chr15:9798955 Cmo02g01022 Cmo-Chr2:6215634 1.70E-168 wgd
Cmo18g01215 Cmo-Chr18:12076006 Cmo02g01022 Cmo-Chr2:6215634 1.73E-103 wgd
Cmo02g01022 Cmo-Chr2:6215634 Cmo02g01551 Cmo-Chr2:8983157 6.06E-78 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo02g01022 - - csv:101211908 479.174