Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo02g01030 ATGTCCGAACCACCTCCCTCCGTCTTCGATCATGATCCCTCCCCCTCCGCCGCCAAGCTCCGTAAGATCCCTCCCATCCCTATTCGCCGCGATACCAAACCCAATGCCGGAGACTCTGATCCCGATCAAGAACATGACCACGCCGAGGATCATCCTCCTCAACCTGGCGATTCCTCCATCATAATGGCCTCCTCCCTCGGGTTGAATCACATTCGGACGCGGTCTGCTCCTCTTCCGCTTCGGACCTGTGCCGTTGGTACGCCCTCCAATTTGGGCGATGATTCTAGGAATAATGTCGCCGACGGGAGTGAGTCGGAGCCAAAAAATTCCTCCACTGAACAGGGGACAAACATTCCGTGGAGTCAACCGAACTCTTTAAGATATCCGTCGGCTCTGAATCATGATATTGAGGGTCATCATGCAGCATATACAAAGGAAATTCAGTCTCCACGATTCCGTGCAATACTGCGTGTTACTAGTGGAAGAAGGAAGAGAACCCCAGATATCAAAAGCTTCTCTCACGAGCTCAATTCCAAAGGGGTTCGCCCTTTTCCAGTTTGGAAGCCTCGGGCATTTGGACATTTGGAAGAGATCATGGTGGCTATCAGAGCAAAATTTGACAGGTTGAAGGATGATGTTAACTACGAACTGGGCATTTTTGCTGGAGATCTCGTAGATATACTTGAAAAGGCAGATCGATCTATGCCTGAACTTAAGGAGGGTTTGGAGGATTTGTTGGTGGTTGCTCGGAAATGTGCGACAATGTCACCTACTGAATTCTGGACAAAAGGTGAAGGCATTGTCCAGAATCTAGATGACCGGCGCCAGGAGCTGTCATTAGGAATTCTTAAGCAAGCCCACACCCGCCTTCTTTTCATCCTGACACGATGTACGCGGCTTATTCAGTTCAGAAAGGAGAGTGGTTATGAAGATGAGCACATTTTGGGTCTTCATCAGCTTAGTGATCTAGGAATTTATCCAGAGAAAATCAGGCAGCTCGAACAACTTGAGTTTGGTGATCCATTGACTGGGAAAGAAGATATTGCGAAGCAGCTGAAGTTAGTTGGGAAGGATCAAGCCCATCGCATTGTGAAGCAAGATTCAGAACAAACTTTTAGTAATAGTGCTGGAAATGTTAGTCTGGACTCTGCCGTAAGTTTTGATTCATCTACAAGCATGTATAGGATGGCATCCTGGAAAAAGCTACCATCAGCAGCTGAGAAGAACCGGAAAGAGTCTGACACTGTCGATACAACACATGCCAAGGATAAAATTGAGGTGTTGCATGTACATGAAGCTAAAACTGGGAGCAATGAGAAATTAGATATCCCATCTAGTCATATTGAGCATTCAGAAGCACCCCCTAAAGAACAAAAAGTATCTTGGGGAATATGGGGTTATCATCAAAATGCCAATTTTGAGAGTTTGATGATCTGTCGGATTTGTGAGGTTGAAATTCCGACTATTCATGTTGAGGTGCATTCTCGAATTTGTACAATTGCCGATAGGTGTGATTTGAAAGGTTTAACTGTGAATGAGCGCCTTGAGCGGGTTGCTAGAGCTCTTGAAAAGATACTGGAGTCTTGGACGCCTAAAAGTACACCAAGAAGTAGCGATACTTCCTGTGCAAATTTTGATACTGTTAAGGTTTCTACATCAAATATGCAAGAAGAGATTTTTGAGTTGTCATCTAAAGGAATCAGTTTGTCATGTCGAAACTCTGAAGAGCTGCTTGATTCCCTCCCTGTTACTGGAAACTCTTCCTTTGTGGAAAGTCAGGATATTTTTCAGGATCAATCATACAATCGACCATTTATTTTCACACCGGAACACAGTACAAAATCAATGTCAGCTGGAACTCTAACACCAAGATCACCTCTTTTAACACCCAGATCCAGTCAGATTGAATTGCTGTTGCATGGGCGAAGAGCAATATCTGAACTTGAAAATTATCAGCAGATATACAAATTGTTGGATATTGTTCGTTCCATTGCAAACGTTAACAACTCTGGCTATGGTGCATTGGAGTGTATGCTCGATCGATTAGAGGACCTTAAATATGCAATCCAGGATAGGAAGGTCGATGCCCTTGTTGTGGAGACTTTTGGAAGGCGCATAGAGAAGCTCTTGCAGGAAAAATACGTACAACTTTGTGGGCAAATAGAAGATGATAAAGTAGACTCTTCAATTGGCATAGTTGATGAAGAGAGTTCAGTGGAAGATGATACTGTTCGTAGTCTGCGTGCAAGTCCGGTTAACCCATGTTCAAAAGATCGAACATCTATTGAAGATTTTGAAATAATCAAACCAATTAGTAGAGGGGCCTATGGCCGAGTTTTCCTTGCCAGAAAACGAGCAACTGGAGACTTATTTGCAATAAAGGTTTTAAAGAAGGCTGATATGATTCGCAAGAATGCAGTTGAAAGTATTTTGGCTGAACGCAATATCCTTATCTCAGTTCGCAACCCTTTTGTGGTCCGCTTTTTCTACTCTTTCACATGTAGGGAAAATCTGTATCTGGTCATGGAATACTTAAATGGTGGTGATATTTACTCCTTACTGAGAAACCTAGGGTGCTTAGATGAAGATATGGCTCGGGTTTATATCGCTGAAATTGTTCTTGCTTTGGAGTATTTGCACTCCTTAAATGTGATTCACAGAGACTTAAAGCCAGACAACTTATTGATTGGTCAAGATGGTCACATTAAGTTGACAGATTTTGGGCTCTCCAAGATTGGTCTTATCAATAGTACAGATGATTTCTCAGGTCCATCAATAAATGGAACTGTTCCACTTGGAGACAATGGACCTACATCTCAATCTTTGTCAAAAAGAGAACACCGACAAAAGCATTCAGTTGTTGGTACTCCAGATTATTTGGCCCCTGAGATACTTCTGGGCATGGGACATGGTGTAACTGCGGATTGGTGGTCTGTTGGAGTAATTCTTTTTGAGATGCTTGTAGGACTACCGCCGTTCAATGCAGAAAGTCCACAGCTAATTTTTGATAATATCATTAATAGAGACATACCATGGCCCAAGGTACCGGACGAGATGAGTTATGAAGCCCAGGATTTGATTGACAAATTGCTGACTGAAAATTCAGTTCAAAGACTGGGAGCTACAGGAGCCAGAGAGGTGAAGCAACATCCTTTCTTCAAGGATATTAATTGGGAAACACTTGCAAGGCAGAAGGCCATGTTTATACCATCAGCAGAGCCACATGATACAAGTTATTTCATGAGTCGATATATATGGAATCCAGAAGACGAGGATTTTAATGGTGCTAGTGACTTTGATGATCATGATTTGACAGATACCAGCAGTAGTTCATTTAGCAACCTACAAGATGAAGATGGAGACGAATGTGGTAGTTTGGCTGACTTCTGTACACCAGCCCTTTCTGTGAAGTACTCGTTCAGCAATTTCTCTTTCAAGAATTTATCACAGTTGGCTTCCATCAATTATGATTTGGTGGTGAAGAGCAGCCAAAACTCACCAGATATAACCAGACCATCCTTTCCTTGA 3528 42.97 MSEPPPSVFDHDPSPSAAKLRKIPPIPIRRDTKPNAGDSDPDQEHDHAEDHPPQPGDSSIIMASSLGLNHIRTRSAPLPLRTCAVGTPSNLGDDSRNNVADGSESEPKNSSTEQGTNIPWSQPNSLRYPSALNHDIEGHHAAYTKEIQSPRFRAILRVTSGRRKRTPDIKSFSHELNSKGVRPFPVWKPRAFGHLEEIMVAIRAKFDRLKDDVNYELGIFAGDLVDILEKADRSMPELKEGLEDLLVVARKCATMSPTEFWTKGEGIVQNLDDRRQELSLGILKQAHTRLLFILTRCTRLIQFRKESGYEDEHILGLHQLSDLGIYPEKIRQLEQLEFGDPLTGKEDIAKQLKLVGKDQAHRIVKQDSEQTFSNSAGNVSLDSAVSFDSSTSMYRMASWKKLPSAAEKNRKESDTVDTTHAKDKIEVLHVHEAKTGSNEKLDIPSSHIEHSEAPPKEQKVSWGIWGYHQNANFESLMICRICEVEIPTIHVEVHSRICTIADRCDLKGLTVNERLERVARALEKILESWTPKSTPRSSDTSCANFDTVKVSTSNMQEEIFELSSKGISLSCRNSEELLDSLPVTGNSSFVESQDIFQDQSYNRPFIFTPEHSTKSMSAGTLTPRSPLLTPRSSQIELLLHGRRAISELENYQQIYKLLDIVRSIANVNNSGYGALECMLDRLEDLKYAIQDRKVDALVVETFGRRIEKLLQEKYVQLCGQIEDDKVDSSIGIVDEESSVEDDTVRSLRASPVNPCSKDRTSIEDFEIIKPISRGAYGRVFLARKRATGDLFAIKVLKKADMIRKNAVESILAERNILISVRNPFVVRFFYSFTCRENLYLVMEYLNGGDIYSLLRNLGCLDEDMARVYIAEIVLALEYLHSLNVIHRDLKPDNLLIGQDGHIKLTDFGLSKIGLINSTDDFSGPSINGTVPLGDNGPTSQSLSKREHRQKHSVVGTPDYLAPEILLGMGHGVTADWWSVGVILFEMLVGLPPFNAESPQLIFDNIINRDIPWPKVPDEMSYEAQDLIDKLLTENSVQRLGATGAREVKQHPFFKDINWETLARQKAMFIPSAEPHDTSYFMSRYIWNPEDEDFNGASDFDDHDLTDTSSSSFSNLQDEDGDECGSLADFCTPALSVKYSFSNFSFKNLSQLASINYDLVVKSSQNSPDITRPSFP 1175
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 6257676 6269580 + CmoCh02G010300.1 Cmo02g01030 376627
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo02g01030 1175 MobiDBLite consensus disorder prediction 926 940 - -
Cmo02g01030 1175 MobiDBLite consensus disorder prediction 88 126 - -
Cmo02g01030 1175 Gene3D Transferase(Phosphotransferase) domain 1 849 1071 - -
Cmo02g01030 1175 ProSiteProfiles Protein kinase domain profile. 765 1053 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo02g01030 1175 MobiDBLite consensus disorder prediction 82 126 - -
Cmo02g01030 1175 Gene3D Phosphorylase Kinase; domain 1 763 1080 - -
Cmo02g01030 1175 MobiDBLite consensus disorder prediction 24 53 - -
Cmo02g01030 1175 PANTHER SERINE/THREONINE PROTEIN KINASE IRE-RELATED 15 1174 - -
Cmo02g01030 1175 MobiDBLite consensus disorder prediction 1 61 - -
Cmo02g01030 1175 SMART serkin_6 765 1053 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo02g01030 1175 CDD STKc_MAST_like 771 1058 - -
Cmo02g01030 1175 ProSitePatterns Serine/Threonine protein kinases active-site signature. 884 896 IPR008271 GO:0004672|GO:0006468
Cmo02g01030 1175 PANTHER SERINE/THREONINE-PROTEIN KINASE 15 1174 - -
Cmo02g01030 1175 ProSiteProfiles AGC-kinase C-terminal domain profile. 1054 1155 IPR000961 GO:0004674|GO:0005524|GO:0006468
Cmo02g01030 1175 SUPERFAMILY Protein kinase-like (PK-like) 762 1085 IPR011009 -
Cmo02g01030 1175 MobiDBLite consensus disorder prediction 926 948 - -
Cmo02g01030 1175 Pfam Protein kinase domain 765 1053 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo02g01030 Cmo15g01451 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo02g01030 Cmo-Chr2:6257676 Cmo08g01054 Cmo-Chr8:6806948 9.26E-84 dispersed
Cmo01g00780 Cmo-Chr1:4055429 Cmo02g01030 Cmo-Chr2:6257676 0 transposed
Cmo15g01451 Cmo-Chr15:9842541 Cmo02g01030 Cmo-Chr2:6257676 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
74125 PF00069 Pkinase 7.60E-64 CL0016 Cmo PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo02g01030 - - csv:101210442 1978.37