Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmo02g01041 | ATGGTGAGAGGGAAGGTCGAAATGAAACGAATAGAAAACGCGACAAATCGTCAAGTGACATTCTCAAAGAGACGAAATGGGCTGCTGAAGAAGGCGTACGAGCTCTCTGTTCTGTGCGATGCTGAAGTTTCTGTCATGATTTTCTCTCAGAAAGGAAGGCTTTATGAGTTCTCAAGCACCGAAACTAAAAGGACGACGATGGGGGAAATTAGGATTTCATCTAGGGTTTTTATACATAAGTCCATCCAGCGTTATCGATGGTATGGAAAAGATGGACAGACCAACGCTCTTCGCTCCGAAGTATACATGCAGCAAATGAAGCAGGAAGCTGACATGACGGCAAAGAAAATGGAGCAACTTGAAACTTCACAAAAGAAGCTGTTGGGACGTGGGTTGGGTTCATGTTCGTTGGAGGAAATCCGAGAGATTGAAACCCAGTTGATACTTAGCTTGACTCGTATTCGAGAAAGAAAGTCTCAGCTATTCAAGGAGCAGAGAATGAAGCTGATTGAAAAGGGGAAACTGCTTATAGAGGAAAATATAAAGTTAGCTGCAAAGTGTGGTACTCAGCCATGGGAGGCAGAAGGTGGTGGTGAAAATGAGGGAGGAGGGATTATGAGTTTATTATGCACCCAAAATGCCCAACCTTCTCATATCAACACTAAATTGTTCATTGGATTGCCTTGCTCATGA | 693 | 43.43 | MVRGKVEMKRIENATNRQVTFSKRRNGLLKKAYELSVLCDAEVSVMIFSQKGRLYEFSSTETKRTTMGEIRISSRVFIHKSIQRYRWYGKDGQTNALRSEVYMQQMKQEADMTAKKMEQLETSQKKLLGRGLGSCSLEEIREIETQLILSLTRIRERKSQLFKEQRMKLIEKGKLLIEENIKLAAKCGTQPWEAEGGGENEGGGIMSLLCTQNAQPSHINTKLFIGLPCS | 230 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
2 | 6328409 | 6332837 | - | CmoCh02G010410.1 | Cmo02g01041 | 376638 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmo02g01041 | 230 | CDD | MADS_MEF2_like | 3 | 65 | IPR033896 | GO:0000977|GO:0045944 | |
Cmo02g01041 | 230 | ProSiteProfiles | K-box domain profile. | 103 | 193 | IPR002487 | GO:0003700|GO:0005634|GO:0006355 | |
Cmo02g01041 | 230 | ProSitePatterns | MADS-box domain signature. | 3 | 57 | IPR002100 | GO:0003677|GO:0046983 | |
Cmo02g01041 | 230 | Pfam | SRF-type transcription factor (DNA-binding and dimerisation domain) | 10 | 57 | IPR002100 | GO:0003677|GO:0046983 | |
Cmo02g01041 | 230 | SUPERFAMILY | SRF-like | 3 | 65 | IPR036879 | GO:0003677|GO:0046983 | |
Cmo02g01041 | 230 | Coils | Coil | 103 | 123 | - | - | |
Cmo02g01041 | 230 | ProSiteProfiles | MADS-box domain profile. | 1 | 61 | IPR002100 | GO:0003677|GO:0046983 | |
Cmo02g01041 | 230 | SMART | madsneu2 | 1 | 60 | IPR002100 | GO:0003677|GO:0046983 | |
Cmo02g01041 | 230 | PANTHER | MADS BOX PROTEIN | 1 | 227 | - | - | |
Cmo02g01041 | 230 | Gene3D | - | 13 | 74 | IPR036879 | GO:0003677|GO:0046983 | |
Cmo02g01041 | 230 | PRINTS | MADS domain signature | 38 | 59 | IPR002100 | GO:0003677|GO:0046983 | |
Cmo02g01041 | 230 | PRINTS | MADS domain signature | 3 | 23 | IPR002100 | GO:0003677|GO:0046983 | |
Cmo02g01041 | 230 | PRINTS | MADS domain signature | 23 | 38 | IPR002100 | GO:0003677|GO:0046983 | |
Cmo02g01041 | 230 | Pfam | K-box region | 103 | 187 | IPR002487 | GO:0003700|GO:0005634|GO:0006355 | |
Cmo02g01041 | 230 | PANTHER | MADS-BOX PROTEIN SOC1 | 1 | 227 | - | - |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cmo02g01041 | Cmo15g01463 | CST |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmo02g01041 | Cmo-Chr2:6328409 | Cmo08g00912 | Cmo-Chr8:5937954 | 5.41E-51 | dispersed | |
Cmo15g01463 | Cmo-Chr15:9931669 | Cmo02g01041 | Cmo-Chr2:6328409 | 2.30E-43 | transposed | |
Cmo15g01462 | Cmo-Chr15:9923270 | Cmo02g01041 | Cmo-Chr2:6328409 | 1.56E-20 | wgd | |
Cmo02g01041 | Cmo-Chr2:6328409 | Cmo02g01534 | Cmo-Chr2:8913207 | 4.67E-43 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
9272 | PF01486 | K-box | 8.20E-18 | No_clan | Cmo | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmo02g01041 | - | - | csv:101212323 | 300.441 |