Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo02g01041 ATGGTGAGAGGGAAGGTCGAAATGAAACGAATAGAAAACGCGACAAATCGTCAAGTGACATTCTCAAAGAGACGAAATGGGCTGCTGAAGAAGGCGTACGAGCTCTCTGTTCTGTGCGATGCTGAAGTTTCTGTCATGATTTTCTCTCAGAAAGGAAGGCTTTATGAGTTCTCAAGCACCGAAACTAAAAGGACGACGATGGGGGAAATTAGGATTTCATCTAGGGTTTTTATACATAAGTCCATCCAGCGTTATCGATGGTATGGAAAAGATGGACAGACCAACGCTCTTCGCTCCGAAGTATACATGCAGCAAATGAAGCAGGAAGCTGACATGACGGCAAAGAAAATGGAGCAACTTGAAACTTCACAAAAGAAGCTGTTGGGACGTGGGTTGGGTTCATGTTCGTTGGAGGAAATCCGAGAGATTGAAACCCAGTTGATACTTAGCTTGACTCGTATTCGAGAAAGAAAGTCTCAGCTATTCAAGGAGCAGAGAATGAAGCTGATTGAAAAGGGGAAACTGCTTATAGAGGAAAATATAAAGTTAGCTGCAAAGTGTGGTACTCAGCCATGGGAGGCAGAAGGTGGTGGTGAAAATGAGGGAGGAGGGATTATGAGTTTATTATGCACCCAAAATGCCCAACCTTCTCATATCAACACTAAATTGTTCATTGGATTGCCTTGCTCATGA 693 43.43 MVRGKVEMKRIENATNRQVTFSKRRNGLLKKAYELSVLCDAEVSVMIFSQKGRLYEFSSTETKRTTMGEIRISSRVFIHKSIQRYRWYGKDGQTNALRSEVYMQQMKQEADMTAKKMEQLETSQKKLLGRGLGSCSLEEIREIETQLILSLTRIRERKSQLFKEQRMKLIEKGKLLIEENIKLAAKCGTQPWEAEGGGENEGGGIMSLLCTQNAQPSHINTKLFIGLPCS 230
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 6328409 6332837 - CmoCh02G010410.1 Cmo02g01041 376638
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo02g01041 230 CDD MADS_MEF2_like 3 65 IPR033896 GO:0000977|GO:0045944
Cmo02g01041 230 ProSiteProfiles K-box domain profile. 103 193 IPR002487 GO:0003700|GO:0005634|GO:0006355
Cmo02g01041 230 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Cmo02g01041 230 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Cmo02g01041 230 SUPERFAMILY SRF-like 3 65 IPR036879 GO:0003677|GO:0046983
Cmo02g01041 230 Coils Coil 103 123 - -
Cmo02g01041 230 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Cmo02g01041 230 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Cmo02g01041 230 PANTHER MADS BOX PROTEIN 1 227 - -
Cmo02g01041 230 Gene3D - 13 74 IPR036879 GO:0003677|GO:0046983
Cmo02g01041 230 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Cmo02g01041 230 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Cmo02g01041 230 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Cmo02g01041 230 Pfam K-box region 103 187 IPR002487 GO:0003700|GO:0005634|GO:0006355
Cmo02g01041 230 PANTHER MADS-BOX PROTEIN SOC1 1 227 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo02g01041 Cmo15g01463 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo02g01041 Cmo-Chr2:6328409 Cmo08g00912 Cmo-Chr8:5937954 5.41E-51 dispersed
Cmo15g01463 Cmo-Chr15:9931669 Cmo02g01041 Cmo-Chr2:6328409 2.30E-43 transposed
Cmo15g01462 Cmo-Chr15:9923270 Cmo02g01041 Cmo-Chr2:6328409 1.56E-20 wgd
Cmo02g01041 Cmo-Chr2:6328409 Cmo02g01534 Cmo-Chr2:8913207 4.67E-43 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
9272 PF01486 K-box 8.20E-18 No_clan Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo02g01041 - - csv:101212323 300.441