Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmo02g01043 | ATGTCTTCCACCACCCTTCTCTCTCTCCCCTTCACTCTCAGGCCCTCTCGCTTCCCCAATTCCTCTCTCTCGCCGCTCCGCCGTGCCACCTCTGTCGCGCCATTTCCCACAGTTGCGGCGGTTCGCTGCGGGTTTAAGCCTGCTTCCAAGAGTAGCAGAGGCAGTTCTACTTTTTTCGCTTATGTCGGGCCTGCTTCGGACCCTAATGTCAGCGAGTCCGACCCGAAACTCGATGACGCCTCCGTTTCCCAGGATCGAGTTCCTGGGGTCTTGTATTGGGGGCTCTTGTGGAGGCTTTTGATGAAGCACAAGCTACGGCTTCTGGTTTCTTCGCTTACTCTTGTTTGCTGCACCACTTGCACTCTTTCCATGCCGTTTTTCTCAGGTAGATTTTTTGAGGTACTTATAGGTGCAAAACCTGGGTCTTTGTGGAGGCTGCTGAGTACAGTTGGAATTTTATATGCAATGGAGCCAATATTGACGGTCTTGTTCGTCACAAACATGAATTTCATGTGGGAGAAGGTTATGTCAAGATTAAGAGCCCAGATTTTTGGAAGGTTGCTGATTCAGAAGGTGGAATTTTTTGACAGATACAAGGTTGGTGAAATTACCGGATTGTTAACTTCTGATTTGGGCTCTCTTAAAGATGTGGTGAGTGAGAATGTTTCAAGGGACCGTGGATTCAGAGCGTTCTCTGAGGTGATTGGAACAATATGTATATTATTTGCATTGTCCCCCCAGCTTGCACCTATTCTTGGTCTTCTGATGTTGAGTGTATCGTTTTCAGTGGCTGTATACAAGCGTTCTACTATCCCTGTCTTTAAAGCTCATGGATTAGCTCAAGCCTCCATGGCTGATTGTGCAACAGAGACATTCTCTGCTATTCGCACTGTGAGATCCTTTGGTGGTGAAAAGCGTCAAATGTTCAATTTTGGTCGCCAGGTTATTGCATATGAGGGTAGTGGCATATCACTTGGGACTTTTAAATCTCTGAATGAATCCTTAACTAGAGTTGCTGTTTATATTTCGCTTATGTCATTATATTGGCTTGGAGGAGACAAAGTGAAAGCGGGTGAACTTTCTGTAGGAACCATGGCTTCTTTTATTGGATATACTTTCACGTTAACATTTGCTGTTCAAGGATTGGTAAATACATTTGGAGATCTCCGTCGAACTTTTGCTGCTGTTGAAAGAATTAATACTGTTTTACATGAAGAGGTTGATGAAGCCCTTGCATATGGATTAGAAAAAGAGATGCAACAAAAAGAATTTAAATATAAGTTGTTGTTCTCTGGCGTTACTGATGAAAACAGTCAGGTGAAAACACAGTACATGGCAGACCTAAAATCTTCTAGCAACGTTATCAATCTTGCTTGGTCTGGTGATATTTGTCTTGAAGATGTGGGCTTTTCTTATCCTTTGAGACCTGACGTTGACATTCTTAGTGATTTGAATTTAACACTTAAATGTGGAACCGTGACGGCACTAGTGGGTCCTAGTGGAGCAGGAAAGAGTACAATAGTACAGCTGTTGGCACGTTTTTATGAGCCAAAGCAAGGGCAAATAAAAGTTTCTGGTGAAGATATTCGAGCATTTGATAAGAGGGAATGGGCTCGGGCTGTTTCAATAGTGAATCAAGAACCTGTTCTGTTTTCGGTGTCTGTTGGAGAAAATATTGCATATGGACTTCCAGATGATAATGTAACAAAGGATGAGGTGATAAAGGCAGCCAGAGCTGCAAACGCTCATGACTTCATTGTTGCACTTCCTCAGGGCTATGACACACCAGTCGGTGAACGCGGAGGCCTTCTAAGTGGTGGCCAGCGACAGAGAATAGCCATTGCAAGAGCTTTGCTTAAGAATGCTCCAATCCTTATACTTGATGAGGCAACCAGCGCACTGGATGCAGTTAGCGAGCGACTCGTCCAGGATGCTCTAAACCTGTTGATGAAGGGAAGGACGACATTGGTGATTGCACATCGGTTGAGTACAGTTCAAAATGCTCATCAAATTGCATTTTGTTCCGATGGAAAAATTGTAGAGCTGGGTACTCATTTGGAACTATTGGCTCAGAAAGGTCAGTATGCTTCATTAGTTGGCACACAAAGGCTGGCATTTGAGTGA | 2124 | 44.16 | MSSTTLLSLPFTLRPSRFPNSSLSPLRRATSVAPFPTVAAVRCGFKPASKSSRGSSTFFAYVGPASDPNVSESDPKLDDASVSQDRVPGVLYWGLLWRLLMKHKLRLLVSSLTLVCCTTCTLSMPFFSGRFFEVLIGAKPGSLWRLLSTVGILYAMEPILTVLFVTNMNFMWEKVMSRLRAQIFGRLLIQKVEFFDRYKVGEITGLLTSDLGSLKDVVSENVSRDRGFRAFSEVIGTICILFALSPQLAPILGLLMLSVSFSVAVYKRSTIPVFKAHGLAQASMADCATETFSAIRTVRSFGGEKRQMFNFGRQVIAYEGSGISLGTFKSLNESLTRVAVYISLMSLYWLGGDKVKAGELSVGTMASFIGYTFTLTFAVQGLVNTFGDLRRTFAAVERINTVLHEEVDEALAYGLEKEMQQKEFKYKLLFSGVTDENSQVKTQYMADLKSSSNVINLAWSGDICLEDVGFSYPLRPDVDILSDLNLTLKCGTVTALVGPSGAGKSTIVQLLARFYEPKQGQIKVSGEDIRAFDKREWARAVSIVNQEPVLFSVSVGENIAYGLPDDNVTKDEVIKAARAANAHDFIVALPQGYDTPVGERGGLLSGGQRQRIAIARALLKNAPILILDEATSALDAVSERLVQDALNLLMKGRTTLVIAHRLSTVQNAHQIAFCSDGKIVELGTHLELLAQKGQYASLVGTQRLAFE | 707 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
2 | 6342940 | 6349982 | + | CmoCh02G010430.1 | Cmo02g01043 | 376640 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmo02g01043 | 707 | Pfam | ABC transporter | 481 | 632 | IPR003439 | GO:0005524 | |
Cmo02g01043 | 707 | CDD | ABC_MTABC3_MDL1_MDL2 | 463 | 702 | - | - | |
Cmo02g01043 | 707 | ProSiteProfiles | ABC transporter integral membrane type-1 fused domain profile. | 108 | 391 | IPR011527 | GO:0005524|GO:0016021|GO:0055085|GO:0140359 | |
Cmo02g01043 | 707 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 454 | 702 | IPR027417 | - | |
Cmo02g01043 | 707 | ProSitePatterns | ABC transporters family signature. | 604 | 618 | IPR017871 | GO:0005524 | |
Cmo02g01043 | 707 | ProSiteProfiles | ATP-binding cassette, ABC transporter-type domain profile. | 463 | 701 | IPR003439 | GO:0005524 | |
Cmo02g01043 | 707 | PANTHER | ATP-BINDING CASSETTE SUB-FAMILY B | 51 | 705 | IPR039421 | - | |
Cmo02g01043 | 707 | Pfam | ABC transporter transmembrane region | 109 | 378 | IPR011527 | GO:0005524|GO:0016021|GO:0055085|GO:0140359 | |
Cmo02g01043 | 707 | Gene3D | ABC transporter type 1, transmembrane domain | 449 | 460 | IPR036640 | GO:0005524|GO:0016021 | |
Cmo02g01043 | 707 | SMART | AAA_5 | 490 | 684 | IPR003593 | - | |
Cmo02g01043 | 707 | SUPERFAMILY | ABC transporter transmembrane region | 96 | 408 | IPR036640 | GO:0005524|GO:0016021 | |
Cmo02g01043 | 707 | Gene3D | - | 461 | 704 | IPR027417 | - | |
Cmo02g01043 | 707 | Gene3D | ABC transporter type 1, transmembrane domain | 93 | 409 | IPR036640 | GO:0005524|GO:0016021 | |
Cmo02g01043 | 707 | CDD | ABC_6TM_TAP_ABCB8_10_like | 112 | 399 | - | - | |
Cmo02g01043 | 707 | PANTHER | ABC TRANSPORTER B FAMILY MEMBER 28 | 51 | 705 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmo02g01043 | Cmo-Chr2:6342940 | Cmo18g00009 | Cmo-Chr18:31575 | 2.59E-98 | dispersed | |
Cmo02g01043 | Cmo-Chr2:6342940 | Cmo03g01358 | Cmo-Chr3:10026639 | 1.91E-77 | transposed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmo02g01043 | K05657 | - | csv:101211598 | 1182.55 |