Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo02g01043 ATGTCTTCCACCACCCTTCTCTCTCTCCCCTTCACTCTCAGGCCCTCTCGCTTCCCCAATTCCTCTCTCTCGCCGCTCCGCCGTGCCACCTCTGTCGCGCCATTTCCCACAGTTGCGGCGGTTCGCTGCGGGTTTAAGCCTGCTTCCAAGAGTAGCAGAGGCAGTTCTACTTTTTTCGCTTATGTCGGGCCTGCTTCGGACCCTAATGTCAGCGAGTCCGACCCGAAACTCGATGACGCCTCCGTTTCCCAGGATCGAGTTCCTGGGGTCTTGTATTGGGGGCTCTTGTGGAGGCTTTTGATGAAGCACAAGCTACGGCTTCTGGTTTCTTCGCTTACTCTTGTTTGCTGCACCACTTGCACTCTTTCCATGCCGTTTTTCTCAGGTAGATTTTTTGAGGTACTTATAGGTGCAAAACCTGGGTCTTTGTGGAGGCTGCTGAGTACAGTTGGAATTTTATATGCAATGGAGCCAATATTGACGGTCTTGTTCGTCACAAACATGAATTTCATGTGGGAGAAGGTTATGTCAAGATTAAGAGCCCAGATTTTTGGAAGGTTGCTGATTCAGAAGGTGGAATTTTTTGACAGATACAAGGTTGGTGAAATTACCGGATTGTTAACTTCTGATTTGGGCTCTCTTAAAGATGTGGTGAGTGAGAATGTTTCAAGGGACCGTGGATTCAGAGCGTTCTCTGAGGTGATTGGAACAATATGTATATTATTTGCATTGTCCCCCCAGCTTGCACCTATTCTTGGTCTTCTGATGTTGAGTGTATCGTTTTCAGTGGCTGTATACAAGCGTTCTACTATCCCTGTCTTTAAAGCTCATGGATTAGCTCAAGCCTCCATGGCTGATTGTGCAACAGAGACATTCTCTGCTATTCGCACTGTGAGATCCTTTGGTGGTGAAAAGCGTCAAATGTTCAATTTTGGTCGCCAGGTTATTGCATATGAGGGTAGTGGCATATCACTTGGGACTTTTAAATCTCTGAATGAATCCTTAACTAGAGTTGCTGTTTATATTTCGCTTATGTCATTATATTGGCTTGGAGGAGACAAAGTGAAAGCGGGTGAACTTTCTGTAGGAACCATGGCTTCTTTTATTGGATATACTTTCACGTTAACATTTGCTGTTCAAGGATTGGTAAATACATTTGGAGATCTCCGTCGAACTTTTGCTGCTGTTGAAAGAATTAATACTGTTTTACATGAAGAGGTTGATGAAGCCCTTGCATATGGATTAGAAAAAGAGATGCAACAAAAAGAATTTAAATATAAGTTGTTGTTCTCTGGCGTTACTGATGAAAACAGTCAGGTGAAAACACAGTACATGGCAGACCTAAAATCTTCTAGCAACGTTATCAATCTTGCTTGGTCTGGTGATATTTGTCTTGAAGATGTGGGCTTTTCTTATCCTTTGAGACCTGACGTTGACATTCTTAGTGATTTGAATTTAACACTTAAATGTGGAACCGTGACGGCACTAGTGGGTCCTAGTGGAGCAGGAAAGAGTACAATAGTACAGCTGTTGGCACGTTTTTATGAGCCAAAGCAAGGGCAAATAAAAGTTTCTGGTGAAGATATTCGAGCATTTGATAAGAGGGAATGGGCTCGGGCTGTTTCAATAGTGAATCAAGAACCTGTTCTGTTTTCGGTGTCTGTTGGAGAAAATATTGCATATGGACTTCCAGATGATAATGTAACAAAGGATGAGGTGATAAAGGCAGCCAGAGCTGCAAACGCTCATGACTTCATTGTTGCACTTCCTCAGGGCTATGACACACCAGTCGGTGAACGCGGAGGCCTTCTAAGTGGTGGCCAGCGACAGAGAATAGCCATTGCAAGAGCTTTGCTTAAGAATGCTCCAATCCTTATACTTGATGAGGCAACCAGCGCACTGGATGCAGTTAGCGAGCGACTCGTCCAGGATGCTCTAAACCTGTTGATGAAGGGAAGGACGACATTGGTGATTGCACATCGGTTGAGTACAGTTCAAAATGCTCATCAAATTGCATTTTGTTCCGATGGAAAAATTGTAGAGCTGGGTACTCATTTGGAACTATTGGCTCAGAAAGGTCAGTATGCTTCATTAGTTGGCACACAAAGGCTGGCATTTGAGTGA 2124 44.16 MSSTTLLSLPFTLRPSRFPNSSLSPLRRATSVAPFPTVAAVRCGFKPASKSSRGSSTFFAYVGPASDPNVSESDPKLDDASVSQDRVPGVLYWGLLWRLLMKHKLRLLVSSLTLVCCTTCTLSMPFFSGRFFEVLIGAKPGSLWRLLSTVGILYAMEPILTVLFVTNMNFMWEKVMSRLRAQIFGRLLIQKVEFFDRYKVGEITGLLTSDLGSLKDVVSENVSRDRGFRAFSEVIGTICILFALSPQLAPILGLLMLSVSFSVAVYKRSTIPVFKAHGLAQASMADCATETFSAIRTVRSFGGEKRQMFNFGRQVIAYEGSGISLGTFKSLNESLTRVAVYISLMSLYWLGGDKVKAGELSVGTMASFIGYTFTLTFAVQGLVNTFGDLRRTFAAVERINTVLHEEVDEALAYGLEKEMQQKEFKYKLLFSGVTDENSQVKTQYMADLKSSSNVINLAWSGDICLEDVGFSYPLRPDVDILSDLNLTLKCGTVTALVGPSGAGKSTIVQLLARFYEPKQGQIKVSGEDIRAFDKREWARAVSIVNQEPVLFSVSVGENIAYGLPDDNVTKDEVIKAARAANAHDFIVALPQGYDTPVGERGGLLSGGQRQRIAIARALLKNAPILILDEATSALDAVSERLVQDALNLLMKGRTTLVIAHRLSTVQNAHQIAFCSDGKIVELGTHLELLAQKGQYASLVGTQRLAFE 707
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 6342940 6349982 + CmoCh02G010430.1 Cmo02g01043 376640
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo02g01043 707 Pfam ABC transporter 481 632 IPR003439 GO:0005524
Cmo02g01043 707 CDD ABC_MTABC3_MDL1_MDL2 463 702 - -
Cmo02g01043 707 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 108 391 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Cmo02g01043 707 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 454 702 IPR027417 -
Cmo02g01043 707 ProSitePatterns ABC transporters family signature. 604 618 IPR017871 GO:0005524
Cmo02g01043 707 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 463 701 IPR003439 GO:0005524
Cmo02g01043 707 PANTHER ATP-BINDING CASSETTE SUB-FAMILY B 51 705 IPR039421 -
Cmo02g01043 707 Pfam ABC transporter transmembrane region 109 378 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Cmo02g01043 707 Gene3D ABC transporter type 1, transmembrane domain 449 460 IPR036640 GO:0005524|GO:0016021
Cmo02g01043 707 SMART AAA_5 490 684 IPR003593 -
Cmo02g01043 707 SUPERFAMILY ABC transporter transmembrane region 96 408 IPR036640 GO:0005524|GO:0016021
Cmo02g01043 707 Gene3D - 461 704 IPR027417 -
Cmo02g01043 707 Gene3D ABC transporter type 1, transmembrane domain 93 409 IPR036640 GO:0005524|GO:0016021
Cmo02g01043 707 CDD ABC_6TM_TAP_ABCB8_10_like 112 399 - -
Cmo02g01043 707 PANTHER ABC TRANSPORTER B FAMILY MEMBER 28 51 705 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo02g01043 Cmo-Chr2:6342940 Cmo18g00009 Cmo-Chr18:31575 2.59E-98 dispersed
Cmo02g01043 Cmo-Chr2:6342940 Cmo03g01358 Cmo-Chr3:10026639 1.91E-77 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo02g01043 K05657 - csv:101211598 1182.55