Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo02g01061 ATGGATTTTCCCGATGCTTCTTCTTCTTCTAATTCCGAATTCTTCACTTCCCGCCGATCCAATTTCTCCGACGAGGAGCTTCTCCTGGCATCCCGACACCCCAAGAAGAGGGCCGGCAGAAAGAAATTCAAGGAAACTCGCCACCCTGTTTACCGTGGTGTCCGCCGCCGCAATTCCGGCAAGTGGGTCTGCGAGGTCAGAGAGCCCAATAAAAAGACTAGGATTTGGCTCGGTACTTTCCCCACCGCCGAGATGGCTGCTCGGGCTCATGATGTAGCCGCCATCGCCCTCCGCGGTCGCTCTGCTTGCCTTAATTTTGCCGACTCTGTTTCCGCGCTTCCTCGCCCGGCTTCTCTTGATCCCAAGGATATTCAGAGGGCCGCGGCTGAGGCTGCAGAGGCCTTCCGCCCGCCGGAGACTGCCCCGGCGGAGGATATGTTTTGTTTCGATAACGATGAGATGCCCGGGTTTCTGGCGGACATGGCGGAGGCAATGCTGCTGCCGCCGCCCAATTGTGTGGCGACTGACCACGACGACTATGGGCCGAATTCCATGGATTTTGATGCCGACATGTCGTTGTGGAGTTACTCAATTTGA 597 56.78 MDFPDASSSSNSEFFTSRRSNFSDEELLLASRHPKKRAGRKKFKETRHPVYRGVRRRNSGKWVCEVREPNKKTRIWLGTFPTAEMAARAHDVAAIALRGRSACLNFADSVSALPRPASLDPKDIQRAAAEAAEAFRPPETAPAEDMFCFDNDEMPGFLADMAEAMLLPPPNCVATDHDDYGPNSMDFDADMSLWSYSI 198
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 6465361 6465957 + CmoCh02G010610.1 Cmo02g01061 376658
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo02g01061 198 SMART rav1_2 50 113 IPR001471 GO:0003700|GO:0006355
Cmo02g01061 198 ProSiteProfiles AP2/ERF domain profile. 50 107 IPR001471 GO:0003700|GO:0006355
Cmo02g01061 198 MobiDBLite consensus disorder prediction 26 47 - -
Cmo02g01061 198 SUPERFAMILY DNA-binding domain 50 109 IPR016177 GO:0003677
Cmo02g01061 198 PANTHER AP2/ERF DOMAIN-CONTAINING TRANSCRIPTION FACTOR 9 144 - -
Cmo02g01061 198 PANTHER AP2/ERF DOMAIN-CONTAINING TRANSCRIPTION FACTOR 153 198 - -
Cmo02g01061 198 PRINTS Ethylene responsive element binding protein signature 51 62 IPR001471 GO:0003700|GO:0006355
Cmo02g01061 198 PRINTS Ethylene responsive element binding protein signature 73 89 IPR001471 GO:0003700|GO:0006355
Cmo02g01061 198 Pfam AP2 domain 49 99 IPR001471 GO:0003700|GO:0006355
Cmo02g01061 198 Gene3D AP2/ERF domain 50 108 IPR036955 GO:0003700|GO:0006355
Cmo02g01061 198 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D 9 144 IPR045277 GO:0003700
Cmo02g01061 198 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D 153 198 IPR045277 GO:0003700
Cmo02g01061 198 CDD AP2 51 109 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo02g01061 Cmo-Chr2:6465361 Cmo16g00158 Cmo-Chr16:718294 4.58E-77 dispersed
Cmo02g01061 Cmo-Chr2:6465361 Cmo02g01523 Cmo-Chr2:8862933 3.08E-35 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
9273 PF00847 AP2 9.00E-16 CL0081 Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo02g01061 - - csv:101207745 282.337