Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmo02g01064 | ATGAAGCTCATCCCCTTCCTTCCATGGCCGAACCTCCTCCTCCACATGGCCTTCCTCATCCTCCTCTTCTCATTTTCTTCTCCCCTGTTTCGTTCTTCCATGGCTTCTTCACTTCCTCAGGATGAAGGACGAGCTCTAATGTCAATCAAAGCCTCGTTTAGCAATGTAGCTAATGTGTTGCTCGATTGGGATGATGATCATAACAACGATTTCTGTTCATGGCGTGGGGTTTTCTGCGACAATCTTAGTCTTTCGGTTGCTGCTCTGAACTTGTCCAACTTGAATCTGGGTGGGGAGATTTCACCAGCCATCGGAGATTTAAGAAACTTACAGTCAATTGATTTTCAAGGAAACAAACTGACGGGACAAATCCCTGATGAGATTGGTAACTGTGGTCGTCTTGTTCATTTGGATTTATCTGATAATTTGCTCTATGGGGACGTCCCCTTCACTGTTTCCAAGCTGAAGCTGCTTGAGTTCTTAAATCTGAAGAACAATCAGTTGACTGGCCCAATCCCTTCTACTCTTACTCAGATTCCTAATCTGAAAACTCTTGATCTTGCACGAAACCTGCTTACTGGAGAGATTCCTAGGCTAATCTATTGGAATGAAGTACTGCAATATCTTGGGTTACGAGGGAACTTCTTGACGGGGTCGCTGTCGTCCGATATGTGTCAGCTGACTGGCTTGTGGTACTTTGATGTAAGAGGGAACAATTTGACTGGAACTATACCTGATAGCATAGGGAACTGTACAAGTTTTGAAATTCTGGATATATCCTACAACCACATCTCAGGGGAGATTCCTTACAACATTGGATTTCTTCAAGTAGCCACTTTATCATTACAGGGAAACAGGTTGACTGGTAAGATTCCCAATGTCATTGGATTGATGCAGGCCCTTGCAGTCCTGGATTTGAGTGAGAATGAGCTTGAAGGGCCAATTCCCCCAATATTTGGCAACTTATCCTACACAGGGAAACTATACCTACACGGAAACAAGTTGACCGGGCCGATACCCCCCGAGCTCGGCAATATGTCAAAGCTTAGCTACCTGCAACTAAATGATAATCAACTAACGGGAACAATTCCATTTGAACTTGGAAAATTGGATCAATTGTTTGAATTGAATCTAGCTAACAATTACCTTGAAGGACCCATTCCTCACAACATCAGTTCTTGCACTGCACTGAATCAATTTAATGTACATGGAAACCGTCTCAACGGATCGATCCCTCTCGGCTTCCAGGAACTGGAGAGCTTAACCTATTTGAATCTCTCAGCTAATAACTTCAAAGGCAGGATTCCAGTTGAGCTGGGACGCATAGTTAACCTTGATACATTGGATCTATCTCGAAACTACTTCTCGGGTCCGGTTCCTGCGTCTGTTGGTGATTTGGAACACCTTCTTATCCTAAATTTGAGTGCCAATCGACTCGTTGGGCCATTACCAGCAGAGTTTGGGAATCTTCGAAGTGTTCAAACTATTGATATGTCATTCAACAACTTTTCTGGTAGCATTCCCATGGAGTTGGGTCAGCTGCAAAACATTGTCTCCCTAATTTTGAACAACAATCATTTGCAAGGGAAGATACCTGATCAGCTGACAAATTGTTTTAGTCTTACCAATTTGAACTTGTCATACAATAATCTATCTGGTATCTTACCTCCCATGAAGAACTTCTCTCGATTCCAGCCTGATAGCTTTATTGGGAATCCTCTGCTGTGTGGAAACTGGCTGGGATTGATCTGTGGACCTTATATGGGAAAACCTCCAGTAATGTTGTCTCGGACAGCGGTTGTTTGTATGACGTTTGGATTCGTTATATTGTTGTCGGTAGTTATAATTGCCGTGTGTAAGTCGAATCCCTCGAAGCAATTGATGAAAGGTTCTAGCAAGACAGGGCAAGGTCCTCCAATTGTGGTACTTCATATGGATATGGCTATTCACACGTTCGACGACATTATGAGAACGACCGAGAATCTAAGCGAGAAATACATTATTGGCTATGGAGCTTCGAGCACTGTGTACAAATGTTCACTGAAGAATTCCCGACCTATTGCAATTAAGCGACTTTACAATCACTACGCTCACAATTTACGGGAGTTTGAGACCGAACTCGAAACCATTGGTAGTATCAGACATAGAAATCTTGTTGTACTTCATGGTTATTCATTATCTCCCTGTGGGAATCTCCTTTTCTATGACTACATGGAAAATGGTTCACTTTGGGATCTGCTTCATGGGCCAGGTAAGAAGGTTAAACTGGATTGGGAAGCACGGTTGAAGATAGCGGTCGGAGCTGCACAAGGGCTTGCATATCTTCACCACGACTGCAACCCGCGAATCATTCACCGGGACGTCAAGTCTTCGAATATTCTACTGGATGAAAACTTCGAGGCTCATCTTTCTGATTTTGGGATTGCCAAATGCATCCCAACTGCCAAAACACATGCCTCGACGTATGTGCTTGGAACAATTGGCTATATTGATCCAGAGTATGCTCGGACCTCTCGGCTGAACGAGAAATCTGATGTTTATAGCTTTGGCATTGTTCTTCTGGAACTACTGACGGGAAAGAAAGCTGTGGATAATGAGTCAAATTTGCATCAACTGATATTGTCAAAGACTGATAACAATACTGTGATGGAAGCTGTTGATCCTGAAGTTTCAGTCACATGTATGGATTCAGCTCATGTCCGGAAAACGTTCCAGCTTGCTCTCCTCTGCACAAAACACAATCAAGCGGAACGACCAACAATGCACGAAGTTGCACGAGTTTTGATCTCCCTCCAGCAACCACCTGCATTGAAACAAACTCCATTCCCTACCAAAACATTGGATTACGCACAATTCGTGATCGATAAGGGTCAGAATCAAAATGCAAAGGGACAGGAAGAGGAGGAGCAGCAGAAATCCGACGTGGATTCATCGGATGCTCGGTGGTTTGTTCGGTTTGGGGAAGTTATATCAGAACAACACAGTTTGAATCAATAG | 2997 | 43.51 | MKLIPFLPWPNLLLHMAFLILLFSFSSPLFRSSMASSLPQDEGRALMSIKASFSNVANVLLDWDDDHNNDFCSWRGVFCDNLSLSVAALNLSNLNLGGEISPAIGDLRNLQSIDFQGNKLTGQIPDEIGNCGRLVHLDLSDNLLYGDVPFTVSKLKLLEFLNLKNNQLTGPIPSTLTQIPNLKTLDLARNLLTGEIPRLIYWNEVLQYLGLRGNFLTGSLSSDMCQLTGLWYFDVRGNNLTGTIPDSIGNCTSFEILDISYNHISGEIPYNIGFLQVATLSLQGNRLTGKIPNVIGLMQALAVLDLSENELEGPIPPIFGNLSYTGKLYLHGNKLTGPIPPELGNMSKLSYLQLNDNQLTGTIPFELGKLDQLFELNLANNYLEGPIPHNISSCTALNQFNVHGNRLNGSIPLGFQELESLTYLNLSANNFKGRIPVELGRIVNLDTLDLSRNYFSGPVPASVGDLEHLLILNLSANRLVGPLPAEFGNLRSVQTIDMSFNNFSGSIPMELGQLQNIVSLILNNNHLQGKIPDQLTNCFSLTNLNLSYNNLSGILPPMKNFSRFQPDSFIGNPLLCGNWLGLICGPYMGKPPVMLSRTAVVCMTFGFVILLSVVIIAVCKSNPSKQLMKGSSKTGQGPPIVVLHMDMAIHTFDDIMRTTENLSEKYIIGYGASSTVYKCSLKNSRPIAIKRLYNHYAHNLREFETELETIGSIRHRNLVVLHGYSLSPCGNLLFYDYMENGSLWDLLHGPGKKVKLDWEARLKIAVGAAQGLAYLHHDCNPRIIHRDVKSSNILLDENFEAHLSDFGIAKCIPTAKTHASTYVLGTIGYIDPEYARTSRLNEKSDVYSFGIVLLELLTGKKAVDNESNLHQLILSKTDNNTVMEAVDPEVSVTCMDSAHVRKTFQLALLCTKHNQAERPTMHEVARVLISLQQPPALKQTPFPTKTLDYAQFVIDKGQNQNAKGQEEEEQQKSDVDSSDARWFVRFGEVISEQHSLNQ | 998 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
2 | 6488469 | 6494706 | - | CmoCh02G010640.1 | Cmo02g01064 | 376661 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmo02g01064 | 998 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 783 | 795 | IPR008271 | GO:0004672|GO:0006468 | |
Cmo02g01064 | 998 | SMART | serkin_6 | 662 | 929 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cmo02g01064 | 998 | Gene3D | Transferase(Phosphotransferase) domain 1 | 738 | 941 | - | - | |
Cmo02g01064 | 998 | ProSiteProfiles | Protein kinase domain profile. | 662 | 937 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cmo02g01064 | 998 | PANTHER | LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE ERL1-RELATED | 35 | 970 | - | - | |
Cmo02g01064 | 998 | PANTHER | LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED | 35 | 970 | - | - | |
Cmo02g01064 | 998 | SMART | LRR_typ_2 | 514 | 538 | IPR003591 | - | |
Cmo02g01064 | 998 | SMART | LRR_typ_2 | 346 | 370 | IPR003591 | - | |
Cmo02g01064 | 998 | SMART | LRR_typ_2 | 179 | 203 | IPR003591 | - | |
Cmo02g01064 | 998 | SMART | LRR_typ_2 | 418 | 442 | IPR003591 | - | |
Cmo02g01064 | 998 | SMART | LRR_typ_2 | 227 | 251 | IPR003591 | - | |
Cmo02g01064 | 998 | SMART | LRR_typ_2 | 107 | 131 | IPR003591 | - | |
Cmo02g01064 | 998 | SMART | LRR_typ_2 | 155 | 178 | IPR003591 | - | |
Cmo02g01064 | 998 | SMART | LRR_typ_2 | 466 | 489 | IPR003591 | - | |
Cmo02g01064 | 998 | MobiDBLite | consensus disorder prediction | 958 | 979 | - | - | |
Cmo02g01064 | 998 | ProSitePatterns | Protein kinases ATP-binding region signature. | 668 | 690 | IPR017441 | GO:0005524 | |
Cmo02g01064 | 998 | Gene3D | Ribonuclease Inhibitor | 314 | 586 | IPR032675 | - | |
Cmo02g01064 | 998 | Gene3D | Phosphorylase Kinase; domain 1 | 626 | 737 | - | - | |
Cmo02g01064 | 998 | MobiDBLite | consensus disorder prediction | 961 | 979 | - | - | |
Cmo02g01064 | 998 | Pfam | Protein kinase domain | 665 | 925 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cmo02g01064 | 998 | Pfam | Leucine rich repeat | 444 | 503 | IPR001611 | GO:0005515 | |
Cmo02g01064 | 998 | Pfam | Leucine rich repeat N-terminal domain | 40 | 80 | IPR013210 | - | |
Cmo02g01064 | 998 | SUPERFAMILY | L domain-like | 40 | 333 | - | - | |
Cmo02g01064 | 998 | SUPERFAMILY | L domain-like | 319 | 577 | - | - | |
Cmo02g01064 | 998 | SUPERFAMILY | Protein kinase-like (PK-like) | 639 | 929 | IPR011009 | - | |
Cmo02g01064 | 998 | Gene3D | Ribonuclease Inhibitor | 39 | 202 | IPR032675 | - | |
Cmo02g01064 | 998 | Gene3D | Ribonuclease Inhibitor | 203 | 313 | IPR032675 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmo01g01757 | Cmo-Chr1:13060288 | Cmo02g01064 | Cmo-Chr2:6488469 | 0 | dispersed | |
Cmo02g01064 | Cmo-Chr2:6488469 | Cmo09g00366 | Cmo-Chr9:1609331 | 4.51E-33 | dispersed | |
Cmo19g00384 | Cmo-Chr19:3843920 | Cmo02g01064 | Cmo-Chr2:6488469 | 0 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
74127 | PF00069 | Pkinase | 4.20E-41 | CL0016 | Cmo | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmo02g01064 | K20718 | - | csv:101213139 | 1764.97 |