Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo02g01081 ATGTTCAAATCGTGGAGCAAGAAGCAGAAGATCAAAGCTGTATTCAAATTACAGTTCCGGGCAACTCAGGTGCCGAAGTTGAAGAAATCGGCTTTGATGATATCTTTGGTGCCAGATGATGTGGGGAAGGCAACAGTGAAGCTAGAGAAAGCTGCAATTCAGGATGGAACTTGTTTCTGGGAGAATCCTGTCTATGAAACAGTCAAGCTTGTTAGAGAGATAAAAACAGGAAAAATCAATGAGAAAATTTACCATTTTGTTGTTTCAACTGGATCATCCAAATCTGGCTTTGTAGGTGAAGCTTCGATCGATTTTGCAGATTTTGAGGCGGAGACTGAACCCATGACTGTTTCCCTACCTCTTAAGTTTGCAAACTCTGGTGCCATATTACACGTTACCATTCACAAGATGGAAGGGGATAATGACCAAGGGGATATTGAAGAGAGTGGAGGCGCAGCACTTCAACATGAGAATAGCTTTAATAGCCAGCTTAGCTTTTCTAGTACAGAAGGCAACCATTATCTCACAGAAAATGGTGACCAAAATACATTACGTGAGGATGCTGAACAAAATGGCAACTCTAGAGTGCCCCCTGGCTCTAGTTCAGCTAAATTTGCATCATACTGGGATGGTAATAATGGTGAAAGAAGTACTCAACAGGGTTCCAGATCAATGACGAATGGTGTACGAAGTCCTACCCTCTTGTCACCCCCTAGACAGAACTCCATGCCTAGGAAGGCAACAGTTGACACCACTAGAGTGAAAAACCAAGCACACGAGCGATCAAATACAGAATGGTCCCTGGGTTCAGCTTCAGATGGAAGTTTTGGCGACTCTGCAAATAGTCCTGAAGAAAACACTGCAAGAGAGAGGATGCACCAGGTCCCTAATAGTTCTATTGAAAGAGTAAAGAATGAAAATGTAATGCTCACGAGAAAGCTAGAAGTAACAGAACTGGAATTACAGTCTCTTCGCAAACAGGTCACAAAGGAGACTATACAAGGGCAGAATCTATCACGACAAATCATTTGCCTCACTGAGGAAAGAGATTCACTCAAAACAGAGGGCAAACAACTCAAGTTCTTGAAGAAATGCAATGACGATTCTGAGGACTCGAAGAATTTGAAGTCCGAGATTAAGGAAGCAAGGGTTCAGTTGGCAGCAATAGGGGAGGAGCTTAAGCAGGAAAAGGAAGTACGAACTGATCTTCAGCTACAACTGCAGATAACAAAGGAGTCCAACTCTGATTTAGTTCTTGCTGTGAGAGATCTTGAAGAAATGATTGAGCTAAAAAATAGGGTAATAGCTGATCTATCAAGAAGTTTAGAATCCTGGGAGAGTGATAGAGAACAGGAAGCTGTTGGCCATTGCAAAGAGAATAATGATAAGGACCCAAAGCTCTCAAAAGAATTGATTCAAGAGTATGACGATGTCAAGGAAGTGGATTTGTTGAAACAGGAGATCAAAGATTTAAATAGTGAAATAGAAATGCACTTGAAGAACATGGAAGAGCTAGAAATGCATTTAGAACAACTTATGTCGGAAAATGAAATCCTCAAGCGAGAAAACAGTGACATGTCTGCAAAGTTAGAGAGAAACAAGACAGAATATCAAATAAAACAGAATGAATATTCAGGTTCTCTGGCTGTTATAAGAGAACTTGAATCCGAAATAGAAAGACTTGAAGAGAAACTCCAAATACAAACCGAGGAGTTTTCAGAATCTTTGATCTCAATTAATGAACTTGAAGGTCAGATCAAGCGCTTGGAGAGAGAATTGGAAAAGCAGAAACACGAGTATTACGATGGACTCGATGCCATGAAACATGCCAATGTGAAATTGGAAAAAATGGCTATAGAAGCCAAGGAAATATTGAGTAAGACAAGGTGGAAAAGTGCCATAAAAGCCGTCATTCTTCAGGAGAGAAGTAAAAAGTTCTCGATGGAAATGGCTTCCAAGTTAAATGATAATGAAAAGAGAATCACTAAAGCAGTCAAAGAAATCAATGAGTTGCGTCTGCAGAAAATAGTATTGAAAGAAATGCTCCAGAAGTCTAAGGAAGAGTCCAGGCGAAATAAAGAACAAAATGAAGAAAAACTGCATGGCCTTTCCTTCCAGCTAGAGTTAAAAGCAAAAGAAATGCATCACATGTCAATGGAGCTAGATAACAAATCTAGACGACTTGAAGATGCAAAAAAGCAGGAAGACTATCAGCAGGAGGAAATCCAAATGCTGAAATCAAATATAGAAAAAATAAATGCAGAAAAGCACACTAAAAAGCAGGCAGAGAGAGAACAACCTGAATGTTTGGTCTCTGAAATGGAAGCATTGGAAGAAAGAAGTAAAGAAAAGGAGATTTTGGAAAAAGAGATGGCTTTTTCGAAGAGAGAAGTAGAAAAGGCACAGGAAGAGCTTACTAGAATTAAAGTTTCCAAACACGAGCAAGATACATTAATCGACAATCTGCTAGCTGAGATGGAAATTCTTAGATCCCAAATTAATGAGTTAAAAAAGGAGTCACAGACAGAAAATTCTGAGAAAGAAAACCTAAGAAAACAGGTATTCCAATTAAAGAGTGAACTAGAAAATAAGGAGAGAGCTTCTGGCACATCAAACATCAAGTTGGAAAGTCAAGAAATTTCAGCTTTGAATCGAAACTTAGCATCAATTCATAATGGATCTCAAACACTTGCGCATACCAAACAGGAGCTTTCAACTTCAGGAGAGGTGATGCAATTGCTTCAGGAAACAAACCATTCTGGTATCACCATAGCAAGTAATAAAGAAGAGAAAGCGAACCAGAGCAATGTATATGAAGCACTTTGTGGAAGGAAAGTGGACTCTAACTCATCAAATAAGGAACTGAAATCGTCTACTGCTGGGAAAGGTACCGAGGACTGTAATATTGATCTCCTTAAGGAGATGTCTTCCCTAAAGGAGAGGAACCAAACTATGGAAAGAGAACTGAAGGAAATGGAAGAGAGATACTCAGAAATAAGTCTCAAATTTGCAGAAGTAGAAGGCGAAAGACAACAACTTGTAATGACTGTGCGAAACCTGAAAAATAGTAAAAGAAATTAG 3081 39.34 MFKSWSKKQKIKAVFKLQFRATQVPKLKKSALMISLVPDDVGKATVKLEKAAIQDGTCFWENPVYETVKLVREIKTGKINEKIYHFVVSTGSSKSGFVGEASIDFADFEAETEPMTVSLPLKFANSGAILHVTIHKMEGDNDQGDIEESGGAALQHENSFNSQLSFSSTEGNHYLTENGDQNTLREDAEQNGNSRVPPGSSSAKFASYWDGNNGERSTQQGSRSMTNGVRSPTLLSPPRQNSMPRKATVDTTRVKNQAHERSNTEWSLGSASDGSFGDSANSPEENTARERMHQVPNSSIERVKNENVMLTRKLEVTELELQSLRKQVTKETIQGQNLSRQIICLTEERDSLKTEGKQLKFLKKCNDDSEDSKNLKSEIKEARVQLAAIGEELKQEKEVRTDLQLQLQITKESNSDLVLAVRDLEEMIELKNRVIADLSRSLESWESDREQEAVGHCKENNDKDPKLSKELIQEYDDVKEVDLLKQEIKDLNSEIEMHLKNMEELEMHLEQLMSENEILKRENSDMSAKLERNKTEYQIKQNEYSGSLAVIRELESEIERLEEKLQIQTEEFSESLISINELEGQIKRLERELEKQKHEYYDGLDAMKHANVKLEKMAIEAKEILSKTRWKSAIKAVILQERSKKFSMEMASKLNDNEKRITKAVKEINELRLQKIVLKEMLQKSKEESRRNKEQNEEKLHGLSFQLELKAKEMHHMSMELDNKSRRLEDAKKQEDYQQEEIQMLKSNIEKINAEKHTKKQAEREQPECLVSEMEALEERSKEKEILEKEMAFSKREVEKAQEELTRIKVSKHEQDTLIDNLLAEMEILRSQINELKKESQTENSEKENLRKQVFQLKSELENKERASGTSNIKLESQEISALNRNLASIHNGSQTLAHTKQELSTSGEVMQLLQETNHSGITIASNKEEKANQSNVYEALCGRKVDSNSSNKELKSSTAGKGTEDCNIDLLKEMSSLKERNQTMERELKEMEERYSEISLKFAEVEGERQQLVMTVRNLKNSKRN 1026
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 6581899 6587486 + CmoCh02G010810.1 Cmo02g01081 376678

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo02g01081 1026 Coils Coil 968 1009 - -
Cmo02g01081 1026 MobiDBLite consensus disorder prediction 188 302 - -
Cmo02g01081 1026 Coils Coil 481 536 - -
Cmo02g01081 1026 Coils Coil 300 334 - -
Cmo02g01081 1026 Coils Coil 770 811 - -
Cmo02g01081 1026 Coils Coil 714 765 - -
Cmo02g01081 1026 ProSiteProfiles C2 NT-type domain profile. 3 138 IPR019448 -
Cmo02g01081 1026 Pfam N-terminal C2 in EEIG1 and EHBP1 proteins 7 137 IPR019448 -
Cmo02g01081 1026 Coils Coil 421 441 - -
Cmo02g01081 1026 Coils Coil 372 399 - -
Cmo02g01081 1026 PANTHER BNAC08G20130D PROTEIN 1 1026 - -
Cmo02g01081 1026 MobiDBLite consensus disorder prediction 261 283 - -
Cmo02g01081 1026 MobiDBLite consensus disorder prediction 188 251 - -
Cmo02g01081 1026 Coils Coil 654 699 - -
Cmo02g01081 1026 PANTHER MYOSIN HEAVY CHAIN-RELATED PROTEIN 1 1026 - -
Cmo02g01081 1026 Coils Coil 544 599 - -
Cmo02g01081 1026 Coils Coil 819 867 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo02g01081 - - - csv:101208579 1554.65
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo02g01081 Cmo15g01279 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo02g01081 Cmo-Chr2:6581899 Cmo16g00637 Cmo-Chr16:3143248 3.93E-155 dispersed
Cmo19g00421 Cmo-Chr19:5037376 Cmo02g01081 Cmo-Chr2:6581899 0 wgd
Cmo02g01081 Cmo-Chr2:6581899 Cmo02g01506 Cmo-Chr2:8787388 7.83E-168 wgd
Cmo02g01081 Cmo-Chr2:6581899 Cmo04g00777 Cmo-Chr4:3882148 7.77E-13 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g663 Blo06g01120 . . . . . . . . . Cma02g01064 . Car02g00807 . . Cpe05g00655 . . . . . . . . Cla01g00281 Cam01g0291 Cec01g0284 Cco01g0297 Clacu01g0290 Cmu01g0277 Cre09g2230 . . Cone14ag0089 Cone15ag0095 . Csa05g00299 Chy09g01206 . . . . Bda15g00731 . Bpe12g00427 . . . Cmo02g01081 Cmo15g01279 . . . . . Cpe13g00164 Bhi12g00227 . . Lac11g2114 Hepe06g1563 . Lcy12g1671 . . . . . . . . . . Cme09g01743
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007478 1 1 1 0 1 1 4 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 1 1 36
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo02g01081 Cmo_Chr02 FPKM 7.842759 7.858598 10.639281 9.18716 4.636652 5.50212 4.751946 17.019436 18.927534 18.955891