Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo02g01089 ATGTCTATCATATGTGGCGTGCCTATCCTTGAGTGTGTATGCTGTCTGGGATGTTCTCGTTGGGTCTGGAAACGTTGTCTGCACACAGCCGGGCATGACAGTGAAAATTGGGGCTTAGCCACTTCCGATGAGTTTGAGCCTATTCCCCGGGTTTGTAGATATATCCTAGCTGTGTATGAAGATGATATTCGAAAGCCCCTTTGGGAACCGGTGGGTGGTTATGGAATCAATCCAGATTTGTTACTTGTGAAGAAGACATACAAAGATACACGAGGGCGGGCTCCTCCATATATTTTATATCTTGATCATGATCATGGCGATATTGTTCTTGCTATCAGGGGACTTAATATGGCAAAGGAGAGTGATTATGCTGTTTTATTAGACAATAAGCTGGGAAAGAAGAAATTTGATGGTGGATATGTTCACAATGGGCTTCTGAAGGCAGCTGGGTGGGTTTTGGACACTGAGAATGAAACTTTAAAGGATTTGGTGAAGAAGTATCCAGACTATACTTTGACGTTTGCTGGGCATTCTCTTGGCTCCGGAGTAGCAGCCATGTTAACTTTGGTAGTTGCACAGAATCTTGAAAAATTGGAAAATATTGATCGGAAGCGGATAAGGTGCTATGCTATTGCTCCTGCTAGATGCATGTCCCTGAATCTGGCTGTTAGATATGCAGATATCATCCACTCTGTTGTTCTTCAGGATGACTTCTTACCTAGGACAGCCACCCCCTTGGAAGACATTTTTAAGTCACTACTCTGTTTGCCATGCCTTCTATGCCTGAGGTGCCTGCGGGATACGTGTGTATCAGAGGACCGGATGCTTAAAGATCCAAGGAGGCTTTATGCACCTGGTCGACTCTATCACATCGTCGAGCGAAAGCCCTTCAGATGCGGAAGGTTTCCACCTGTGGTGAAGACGGCTGTTCCAGTAGATGGGCGGTTTGAACACATAGTTCTTTCTTGTAATGCAACTTCTGACCATGCCATCATTTGGATAGAAAAAGAAGCCAAACAAGCCCTGGAATTAATGCACAAGGATAATAAAGCCATGCAGATACCACCCCAACAGAAGATGGAGAGGCAAGAGACTTTAGCTAGAGAGCATAGCGAAGAGTATAAGGCTGCACTGCAACGTGCCGTGACATTAGCAGTGCCACATGCCTACGCGCTTGCCCCATACGGGACCTTCGGCAAGACAGATGATGGGGAAGAAGAAGAAGAAGAGTCACCAGGATCAAGTGGAGGGTCATCCAGGAGGAAGAAAGAAACTTGGAATGAACTGATAGAACGTCTTTACGACAAGGAGGATTCAAAACACGCAGTGCTGAAGAAATCAGTGAGTAGCGTAGATGTGCGGGAGGAGTACGCAAACGCCTTCCGCACGGAATCATATCTAGATTTCTGGACACGTGTCGTGGCCTTAAAAGACGTAGTAGTGGAGTCCACAACAGCAAGCCGGCTGTCGTCTTACCGGCTATTCGCCGAACATCTACTGGACCCAACTGAGCCCACCGTCAAAAGAATCCTAAATTGGGCCCATCTACGGCCCAACTTCAAATCCCTTCTCTCAGACTATTTCTCCCACACAGCCAATGCCTCTCTCTTATGTAGCCGTTTACTCAAAGACATGAACCATTTACGTCCAGAAATTGCCATCCAGTCCTTACAAAACCCAGAATTTAATTTCAAACCCCTCTCCATCCACAACCCATTTCCAGCAATAATCCAAAACGGATGCGCCAAATTGCTGAAACAGCTGGAGTTCAACCGCGACAAGGCTCGAACCAAGGTCAAGAGGGTCAGATATTTCCAGCATAGTTCAGCTGGGTTGTTGGTGGCTGTGACCGCGTCGCTTACTGTAATACTCGTGACTCATGGAATTGGTTTAGTGGTTGTTGCTGCTGCACCGGGTCTCGTTGGCCTTGTGGGTGCTGTGAAGTTAGCTAGGGTTAAGGAGGTGGCTCGAGTGCTGGATGTGGCTGCCAAAGCGACGTACACTTTGAATAGGGATTTCGACACGGTTGGTCGGCTGGTGGCTCGGTTGAATCAGGAGGTGGAGCACATGAAGGGGCTGATGAGGTTCTGGGTTGAGCGAGGGGAAGGTCGTGATGGACGGCATGGCGGCGTTGGGGAAGTGGCGCGCCAGTTGCAGCAATGCCGTCTCAATTTGGGGCAACATTTGGATGAACTTGAGGAGCATTTTAAAAGAAGTATGGCTCCATGGTGGGGGAAATCATCATCAAAAGAAGCAAAGAAGAGCAAGGAAAGTTTTATCAATGCATTGCAGAGAAAACTTAGAACAGCTGATGGTAAAACAAACAGCAGATCAGGAGGATCTCCAAGAACTTGTAATGATAATGATACAATTTCTGAGCAAGGAACTCGATCTCCTATTCTTTTGAGAACAATTTCACCTTCAAAACAAGTATCAAGATGTCAAAGCTTTTCTTCTGAAAGGCCACAAGCTCAACCTCTACCTCTTCCAGGTGTGCAGCCGCCGATTGTAGGTCGTAATGACTCTGGGATTAGTATTTCGCCAAAACCGAGTTCTGAAAGAAGCTCCAAGCCATCGTCATATCTACCACTCCCAAGACCAGCATGCATACCCAGGAGGCCTAACCATGCTGATTTAGATGCAGAGCTTGGTGTAGGTTCAGTGTCCAGTGAGAGCTCGAATGATAGCGCGGATCTACTAGATTCGCGCCATCGTAGTCCTCAGGCAACTGACTATGATCTCGGGTCTAAAACGGCTGCAGGCAGTCCTTCGAGTGCCATTGTCAAGGATCAGTCTTCTATTGTCACTCCACCAAGTTCACGAGAGCCCAGAAAACCAGCAAATATCTCCTTGAGCAACCACATTTTCTCCACATCACCCAAAAGGAGGCCTTTAAGCAGTCATGTTCCAAATCTGCAAGTACCATATAATGGGAATTTTTGTATTGCTCCAGACAGTTCAATGTCAAGTCCTTCAAGAAGTCCCATAAGGGCTTTTAGCACAGAGCAAGTTATTAACAATGCTGTTAGTTCTGGAAAGTTCTATATGGATCTCACTTTTCCTGGGTCAGGCCATTGTTCTAGTCCTGGTTCTGGTTACAATTCAGGGCATAACTCAATGGGTGGTGATTTATCAGGACAGCTATTTTTGCAACAAAGCCGAGGTAGCCCGGAGTATTCACCAGCTCCCAGTCCCAGAATGACTAGCCCTGGTCCTAGCTCCAGAGTCCATAGTGGTGCAGTGACACCAATTCATCCTAGAGCAGGAGGGATACCAACCGAGTCACAGACATGGCCTGACGAGAAGCAAACACACCGCCTACCTCTACCTCCGGTCGCAATTTCCAATGCTCCTTTTTCTCATTCCAATTCAGCTGCAACATCTCCCTCTGTTCCAAGAAGTCCTGGAAGAGCTGATAATCCAGCAAGCCCAGGCTCCCGTTGGAAAAAGGGGAAGCTTTTGGGTAGGGGGACCTTTGGTCATGTGTATGTTGGTTTCAACAGTGAAAGTGGTGAAATGTGTGCAATGAAGGAGGTTACATTATTTTCAGATGATGCAAAGTCCAAGGAGAGTGGCAAGCAATTAATGCAAGAAATCACCTTGTTGAGTCGTTTACGACATCCAAACATTGTGCAGTATTATGGATCTGAAACGGTTGGGGACAGGCTTTACATTTACCTTGAATATGTATCTGGTGGCTCTATTTACAAGCTTCTCCAGGAATATGGACAGCTTGGAGAAGTTGCACTTCGTAGTTATACCCAGCAAATACTGTCCGGGCTTGCGTATTTACATGCTAAGAGTACTGTTCATAGGGATATCAAAGGAGCAAATATACTCGTTGATCCCACGGGGCGTGTTAAGTTGGCTGACTTTGGGATGGCAAAACATATAACTGGGCAATCGTGCCCTTTGTCGCTTAAAGGCAGCCCATACTGGATGGCACCGGAGGTTATAAAGAATTCAAATGGTTGTAATCTTGCTGTGGATATTTGGAGTCTTGGATGCACTGTTTTGGAGATGGCTACAACGAAGCCTCCTTGGAGTCAATATGAGGGAGTCGCTGCAATGTTTAAGATTGGCAATGGCAAAGAACTTCCCGAAATCCCAGATCATCTTCCGCACGATGGAAAAGATTTCGTTAGACAATGTCTGCAACGTAATCCAGCTCATCGTCCTACAGCTGCTCAACTTTTGGAACATCCTTTTGTAAAACATGCTTCACCTCTTGAAAGACCGATTTCGGGTTCTGAGCATTCAGGAAGGAATCCCAGCTTCTTGGATTCTGATAGATCTGCAGCTCCTTCATCTAGACTCTCCACAGCTGTGTTTCATTCCAGTGAAACTCATATACCGAGGAACCTTTCATGTCCTGTTTCCCCCATTGGAAGCCCTCTGGTGCACTCTCGATCGCCACAGCACCCGAGTGGAAGAATGTCTCCGTCGCCCATCTCTAGCCCTCGGAACATGTCAGGTGCATCGACTCCGCTCACGGGAGGAAGCGGTGCTATTCCACACCAGCATCTCAAACAATCACCGTACCTACAGGAGGGTTTTGGGAGCTTGCCGAAGCCTTCAATAGGTCCCTATAGTAATGGTCCTTCATATCAGGATTCGAACCCCGACATCTTTCAAGGGATGGGGATTCAACCAGGTTCTCACATCTTCTCCGAGCAATTTGGAAAGCCTGCTTGGGAATTATACGACGGGCAGGCAGTCTTGGCCGATCGTGTTTCTAGGCAGCTCCTGAGTGATCACATAACAACTCCCTCCCTGGATCTAAATCCGAACTCTCTTTCGACCAACCGCAGATAG 4815 47.08 MSIICGVPILECVCCLGCSRWVWKRCLHTAGHDSENWGLATSDEFEPIPRVCRYILAVYEDDIRKPLWEPVGGYGINPDLLLVKKTYKDTRGRAPPYILYLDHDHGDIVLAIRGLNMAKESDYAVLLDNKLGKKKFDGGYVHNGLLKAAGWVLDTENETLKDLVKKYPDYTLTFAGHSLGSGVAAMLTLVVAQNLEKLENIDRKRIRCYAIAPARCMSLNLAVRYADIIHSVVLQDDFLPRTATPLEDIFKSLLCLPCLLCLRCLRDTCVSEDRMLKDPRRLYAPGRLYHIVERKPFRCGRFPPVVKTAVPVDGRFEHIVLSCNATSDHAIIWIEKEAKQALELMHKDNKAMQIPPQQKMERQETLAREHSEEYKAALQRAVTLAVPHAYALAPYGTFGKTDDGEEEEEESPGSSGGSSRRKKETWNELIERLYDKEDSKHAVLKKSVSSVDVREEYANAFRTESYLDFWTRVVALKDVVVESTTASRLSSYRLFAEHLLDPTEPTVKRILNWAHLRPNFKSLLSDYFSHTANASLLCSRLLKDMNHLRPEIAIQSLQNPEFNFKPLSIHNPFPAIIQNGCAKLLKQLEFNRDKARTKVKRVRYFQHSSAGLLVAVTASLTVILVTHGIGLVVVAAAPGLVGLVGAVKLARVKEVARVLDVAAKATYTLNRDFDTVGRLVARLNQEVEHMKGLMRFWVERGEGRDGRHGGVGEVARQLQQCRLNLGQHLDELEEHFKRSMAPWWGKSSSKEAKKSKESFINALQRKLRTADGKTNSRSGGSPRTCNDNDTISEQGTRSPILLRTISPSKQVSRCQSFSSERPQAQPLPLPGVQPPIVGRNDSGISISPKPSSERSSKPSSYLPLPRPACIPRRPNHADLDAELGVGSVSSESSNDSADLLDSRHRSPQATDYDLGSKTAAGSPSSAIVKDQSSIVTPPSSREPRKPANISLSNHIFSTSPKRRPLSSHVPNLQVPYNGNFCIAPDSSMSSPSRSPIRAFSTEQVINNAVSSGKFYMDLTFPGSGHCSSPGSGYNSGHNSMGGDLSGQLFLQQSRGSPEYSPAPSPRMTSPGPSSRVHSGAVTPIHPRAGGIPTESQTWPDEKQTHRLPLPPVAISNAPFSHSNSAATSPSVPRSPGRADNPASPGSRWKKGKLLGRGTFGHVYVGFNSESGEMCAMKEVTLFSDDAKSKESGKQLMQEITLLSRLRHPNIVQYYGSETVGDRLYIYLEYVSGGSIYKLLQEYGQLGEVALRSYTQQILSGLAYLHAKSTVHRDIKGANILVDPTGRVKLADFGMAKHITGQSCPLSLKGSPYWMAPEVIKNSNGCNLAVDIWSLGCTVLEMATTKPPWSQYEGVAAMFKIGNGKELPEIPDHLPHDGKDFVRQCLQRNPAHRPTAAQLLEHPFVKHASPLERPISGSEHSGRNPSFLDSDRSAAPSSRLSTAVFHSSETHIPRNLSCPVSPIGSPLVHSRSPQHPSGRMSPSPISSPRNMSGASTPLTGGSGAIPHQHLKQSPYLQEGFGSLPKPSIGPYSNGPSYQDSNPDIFQGMGIQPGSHIFSEQFGKPAWELYDGQAVLADRVSRQLLSDHITTPSLDLNPNSLSTNRR 1604
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 6606331 6620496 + CmoCh02G010890.1 Cmo02g01089 376686
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo02g01089 1604 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE KINASE KINASE YODA 740 1532 - -
Cmo02g01089 1604 MobiDBLite consensus disorder prediction 1116 1134 - -
Cmo02g01089 1604 SUPERFAMILY Protein kinase-like (PK-like) 1146 1488 IPR011009 -
Cmo02g01089 1604 ProSitePatterns Protein kinases ATP-binding region signature. 1154 1177 IPR017441 GO:0005524
Cmo02g01089 1604 MobiDBLite consensus disorder prediction 1466 1501 - -
Cmo02g01089 1604 MobiDBLite consensus disorder prediction 911 947 - -
Cmo02g01089 1604 MobiDBLite consensus disorder prediction 1408 1544 - -
Cmo02g01089 1604 CDD Lipase_3 44 241 - -
Cmo02g01089 1604 SMART serkin_6 1148 1404 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo02g01089 1604 MobiDBLite consensus disorder prediction 1025 1059 - -
Cmo02g01089 1604 Gene3D Transferase(Phosphotransferase) domain 1 1146 1429 - -
Cmo02g01089 1604 Pfam Lipase (class 3) 109 243 IPR002921 GO:0006629
Cmo02g01089 1604 PANTHER MAP KINASE KINASE KINASE SSK2-RELATED-RELATED 740 1532 - -
Cmo02g01089 1604 MobiDBLite consensus disorder prediction 1418 1454 - -
Cmo02g01089 1604 MobiDBLite consensus disorder prediction 844 859 - -
Cmo02g01089 1604 Pfam Lipase 3 N-terminal region 10 73 IPR005592 GO:0016042
Cmo02g01089 1604 MobiDBLite consensus disorder prediction 1025 1151 - -
Cmo02g01089 1604 CDD STKc_MEKK1_plant 1147 1404 - -
Cmo02g01089 1604 MobiDBLite consensus disorder prediction 773 823 - -
Cmo02g01089 1604 MobiDBLite consensus disorder prediction 766 947 - -
Cmo02g01089 1604 Pfam Protein kinase domain 1149 1404 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo02g01089 1604 MobiDBLite consensus disorder prediction 1528 1544 - -
Cmo02g01089 1604 MobiDBLite consensus disorder prediction 397 423 - -
Cmo02g01089 1604 SUPERFAMILY alpha/beta-Hydrolases 41 272 IPR029058 -
Cmo02g01089 1604 ProSiteProfiles Protein kinase domain profile. 1148 1404 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo02g01089 1604 Coils Coil 360 380 - -
Cmo02g01089 1604 Gene3D alpha/beta hydrolase 39 251 IPR029058 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo02g01089 Cmo-Chr2:6606331 Cmo08g00882 Cmo-Chr8:5710710 0 dispersed
Cmo04g02435 Cmo-Chr4:18073433 Cmo02g01089 Cmo-Chr2:6606331 1.84E-78 dispersed
Cmo07g00734 Cmo-Chr7:3325183 Cmo02g01089 Cmo-Chr2:6606331 1.14E-99 dispersed
Cmo14g00784 Cmo-Chr14:3998033 Cmo02g01089 Cmo-Chr2:6606331 2.02E-06 dispersed
Cmo14g01220 Cmo-Chr14:10373273 Cmo02g01089 Cmo-Chr2:6606331 6.43E-13 dispersed
Cmo15g00733 Cmo-Chr15:3583896 Cmo02g01089 Cmo-Chr2:6606331 2.30E-73 dispersed
Cmo17g00336 Cmo-Chr17:2028978 Cmo02g01089 Cmo-Chr2:6606331 1.67E-12 dispersed
Cmo04g02567 Cmo-Chr4:18791536 Cmo02g01089 Cmo-Chr2:6606331 8.78E-21 transposed
Cmo12g00344 Cmo-Chr12:2140361 Cmo02g01089 Cmo-Chr2:6606331 1.72E-18 transposed
Cmo15g01149 Cmo-Chr15:8023707 Cmo02g01089 Cmo-Chr2:6606331 0 wgd
Cmo16g00126 Cmo-Chr16:566206 Cmo02g01089 Cmo-Chr2:6606331 0 wgd
Cmo18g01283 Cmo-Chr18:12410799 Cmo02g01089 Cmo-Chr2:6606331 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
74128 PF00069 Pkinase 5.50E-70 CL0016 Cmo PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo02g01089 K20717 - csv:101222716 1523.06