Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo02g01102 ATGGCTGCCGGAGACGACGACTGGGATCTCTCCGCCGTCGTCCGGAGCTGCTATTCAGGCTCCTCCACCTCCTCCACCTCCACCGCCGCCGACCCAACTGCCGCTTCCGCCGCAGAAACCGCCTTGTCTTGTCTCGCTTCCTTAACTTTTGACGACGATCCAAACAACGTCGCATTCTCCTTTTCCGACATCCTTCACCCCCAACAGCCCAACGGCTTCCATGAATTACACCAAGCCTTCATTTCTTTCCTCCCCAACCCCGTCGCCCCCGCCGTCGCCCCCGCCGCACCGGAAATCCCCAATCCGGTTCCAACCCGCCAATCCCGACACGGAATTAAACCCATTCGACCACAGCCAGATCCCGGAGCGGTGGCGCTGCAATCCCATCACCGGCAACAGCCACTTTTCCGGCCAGACTTCCCAAATTCACCAATGACGCCTCCTCACATACCCAAATCGAGAAAAAGGCAAAATCAACAGAAGAGAACCGTATGCCATGTGACTGCTGATAATCTCTCAACAGACATGAACTATTACCGTTGCAGCAGCTCAAAAGGGTGTGGGGCAAGAAAGCAAGTTGAACGGAGCAACGCCGACCCAGAAACTTTCATCGTCACATACACTGGAGATCACACTCATCCACGTCCAACTCATCGAAATTCCCTTGCCGGGAGTTCCCGAAACAGGTCGTCGTCTGCAATTCCCACGAAAAACCTGACGATAGGAGACCCTGATCGGTTATTGCTCGGCACAGCCACCGTGGGCTCTCCGATGACACCGCTTAACGAAGACGGCGGGAGCGGAGAGAAAGAAGGAGAGATTTTGGAGGATTTGAGCATTGATAGTGAGGAGTACGAGGATAATGATATTCTAATTCCAAATTTGATGATGAGAAATGAAATCTTTGTTGGGTTTGAGGAGCTTGGTTGTAGTCCTCGAAGGAAGGCTTGA 951 53.42 MAAGDDDWDLSAVVRSCYSGSSTSSTSTAADPTAASAAETALSCLASLTFDDDPNNVAFSFSDILHPQQPNGFHELHQAFISFLPNPVAPAVAPAAPEIPNPVPTRQSRHGIKPIRPQPDPGAVALQSHHRQQPLFRPDFPNSPMTPPHIPKSRKRQNQQKRTVCHVTADNLSTDMNYYRCSSSKGCGARKQVERSNADPETFIVTYTGDHTHPRPTHRNSLAGSSRNRSSSAIPTKNLTIGDPDRLLLGTATVGSPMTPLNEDGGSGEKEGEILEDLSIDSEEYEDNDILIPNLMMRNEIFVGFEELGCSPRRKA 316
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 6677813 6679130 + CmoCh02G011020.1 Cmo02g01102 376699

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo02g01102 316 MobiDBLite consensus disorder prediction 207 244 - -
Cmo02g01102 316 PANTHER WRKY TRANSCRIPTION FACTOR 27-RELATED 6 176 - -
Cmo02g01102 316 PANTHER WRKY TRANSCRIPTION FACTOR 27-RELATED 176 308 - -
Cmo02g01102 316 SUPERFAMILY WRKY DNA-binding domain 174 216 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cmo02g01102 316 MobiDBLite consensus disorder prediction 218 238 - -
Cmo02g01102 316 Gene3D WRKY domain 149 217 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cmo02g01102 316 MobiDBLite consensus disorder prediction 96 163 - -
Cmo02g01102 316 ProSiteProfiles WRKY domain profile. 177 216 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cmo02g01102 316 SMART WRKY_cls 173 215 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cmo02g01102 316 PANTHER WRKY TRANSCRIPTION FACTOR 30-RELATED-RELATED 6 176 IPR044810 GO:0003700
Cmo02g01102 316 PANTHER WRKY TRANSCRIPTION FACTOR 30-RELATED-RELATED 176 308 IPR044810 GO:0003700
Cmo02g01102 316 Pfam WRKY DNA -binding domain 173 214 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo02g01102 K13425 WRKY22; WRKY transcription factor 22 - cmo:103482922 370.548
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo02g01102 Cmo16g00630 CCT
Cmo02g01102 Cmo16g00630 ECH
Cmo02g01102 Cmo15g01124 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo02g01102 Cmo-Chr2:6677813 Cmo06g01113 Cmo-Chr6:8571167 1.00E-31 dispersed
Cmo14g02126 Cmo-Chr14:15377304 Cmo02g01102 Cmo-Chr2:6677813 9.19E-32 wgd
Cmo15g01124 Cmo-Chr15:7806671 Cmo02g01102 Cmo-Chr2:6677813 1.03E-115 wgd
Cmo02g01102 Cmo-Chr2:6677813 Cmo04g00768 Cmo-Chr4:3846274 3.78E-21 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g45 . . . . Bpe05g00659 . . . . Cmo16g00630 . . Car02g00702 . . Cpe14g00491 Cpe05g00637 . . . . . . . Cla07g00748 Cam07g0800 Cec07g0865 Cco07g0839 Clacu07g0780 Cmu07g0788 Cre07g1142 . . Cone6ag0812 Cone9ag0811 . . . Cme07g01614 . . Bda07g01906 . . . Bma05g00832 . . Cmo02g01102 Cmo15g01124 . Cma16g00580 . . . . . . . . . . . . . . . . . . . Csa04g00611 Chy07g01200 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009671 2 1 1 0 0 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 1 0 33
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
9278 PF03106 WRKY 5.40E-13 CL0274 Cmo TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo02g01102 Cmo_Chr02 FPKM 25.495888 30.401455 0.0 0.0 0.0 0.0 0.0 0.0 0.112456 0.0