Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo02g01109 ATGGAACAGAAGCACATTTTTCTGTCTGCTTTGGGCGTTGGGGTTGGAGTTGGGGTTGGCCTTGGATTGAGCTCTGGACAAGCTGTTGGCAAATGGGTTGCTGGGAATACCTCTTCTGATGAGATTACAGGGCAGAAGATTGAACAGGAGCTCATCAGGCAGCTCGTTGATGGCAGAAATAGCGATGTTACTTTTGATGAGTTTCCTTATTATCTTTGCGAGAGGACGAGGATGCTCTTGATGAGTGCTGCATATGTTCGTTTGAAGCATTGTGACATCTCCAAACACACCAGAAATCTTTCACCAGCGAGTCGGGCTATTTTGCTTTCAGGACCGACAGAACTGTACCACCAAATGCTTGCCAAGGCTCTGGCGCAACACTTCGAGTCGAAGTTGCTGTTGTTAGACGTTTCTGACTTTTCTCTAAAGATGCAGAGCAAATATGGCTGTGCCAAGAAAGAACCGTCATTTAAGAGGTCCATCTCTGAGGCGGCGTTGGAGCGTGTGTCTAGCGTTTGGGGTTCCTTCTCGATTCTTCCTACGAGTGGAAATACTAGAGGCAATTTAAGAAGGCAAAGCAGTACTACAGACATTCAATCAAGAAGTACCGATGGCCCGTCCAATCCTCCAAAACTTCGGAGAAATGCTTCTACTGCGTCTGATATTAGTAGCATCTCATCGAATTGTGCTTCAACAAATTCAGCTTCTGTCAAGCGCACAAATAGTTGGTGTTTTGATGAGAAACTTTTTCTTCAGTCGCTTTATAAGGTCTTGGTGTCGGTATCCGAAACCAATTCCGTAATTTTGTATCTACGAGATGTCGAGAGACTTCTTCTTCAGTCACAGAGGCTGTACAATCTGTTCCATAGATTTCTGAACAAGCTCTCTGGATCAGTTCTAGTACTCGGTTCGAGAATGGTAGACTTGGAAAATGATTGCGGAGATGTTGACGACAGACTGACCTGTTTATTTCGGTATAGTGTCGAAATTCGACCCCCTGAAGACGAGAATCATCTTGTCAGCTGGAAAGCTCAATTGGAAGAGGACATGAAGATGATTCAATTCCAAGATAACAAAAACCACATTGCTGAAGTTCTTGCTGCAAATGATCTTGAATGTGATGATCTTGGATCAATCTGCCATGCAGACACTATGGTTCTTAGTAATTATATCGAAGAAATCGTCGTATCGGCGATATCCTATCATTTAATGAACAACAGGGATCCCGAATACCGAAACGGAAAACTTCTGATATCTTCCAAGAGTTTATCCCATGGATTGAGTATATTCCAGGAAGGAAATAATGAAGGGAAAGACACTCTAAAGCTAGAGACGAATGCAGAATCATCGAAGGAAGCCCCGGGGGACGATGCTGTCGGGGCGAAGAACGAATCAAAATCTGAAAATTCAGCTGCAGAAAACAGAGGAGAGGCAGATAAATCTGTACCTATAGTGAAGAAAGATGTTGAGAATGTACCTCCACAAAAAGCTCCTGAAGTCCTTCCCGACAACGAATTTGAGAAGCGTATAAGACCAGAAGTTATCCCTGCAAACGAAATCGGGGTGACATTTGCAGACATAGGTTCCTTGGATGAGATCAAAGAGTCCTTACAGGAATTAGTCATGCTTCCTCTTCGACGACCAGACCTCTTTAAAGGCGGGCTTCTCAAACCTTGTAGGGGTATTTTGCTTTTCGGCCCTCCTGGTACGGGTAAAACGATGCTGGCGAAGGCCATTGCTAATGAAGCTGGAGCAAGTTTCATTAATGTTTCAATGTCCACAATCACTTCTAAATGGTTTGGGGAAGACGAAAAGAACGTTCGGGCACTGTTTACGCTTGCAGCAAAGGTTTCCCCTACAATTATTTTTGTCGATGAAGTCGATAGCATGCTTGGCCAGCGGACTAGAGTGGGAGAGCATGAGGCCATGCGGAAGATTAAAAATGAGTTCATGTCACACTGGGATGGATTGCTGACTAGAAATGATGAGAGAATACTAGTTCTTGCTGCAACCAACAGGCCATTTGACCTCGATGAAGCCATCATTCGTCGGTTCGAGCGTAGAATTATGGTTGGTCTTCCATCAGTGGAAAGCAGGGAAATGATCTTGAGAACTCTTCTTTCAAAGGAGAAGGCTGAAGATCTTGATTTCAAGGAGCTTGCAACTATGACAGAAGGGTACAGTGGAAGTGATCTCAAGAATTTGTGCGTGACTGCAGCTTATCGGCCCGTTCGGGAGCTCCTGCAACAAGAGAGATTGAAGGATTTGGAAAAGAAGCAAAGAGAGCTGAAGGAGAAGGAGCAGGAGGAGGAGGAGAAAACGGAGACAGAGATGGAGACCGAGACCAAGAACGAGAACGAGAACGAGAACGACAAGAAGAAGGAAAATAACTCGGAAGATATGACCGTTACGAAAGAGGAAGAAAAAGAGGAACAAGTGATCATTCTGAGGCCTTTAAATATGGATGATATGAGACAGGCAAAAAATCAGGTTGCTGCAAGTTTTGCTTCTGAAGGATCAGTGATGAATGAGTTGAAGCAATGGAATGAGTTGTATGGAGAGGGAGGTTCAAGAAAAAAGCAACAGCTTACGTACTTCCTATAG 2604 44.24 MEQKHIFLSALGVGVGVGVGLGLSSGQAVGKWVAGNTSSDEITGQKIEQELIRQLVDGRNSDVTFDEFPYYLCERTRMLLMSAAYVRLKHCDISKHTRNLSPASRAILLSGPTELYHQMLAKALAQHFESKLLLLDVSDFSLKMQSKYGCAKKEPSFKRSISEAALERVSSVWGSFSILPTSGNTRGNLRRQSSTTDIQSRSTDGPSNPPKLRRNASTASDISSISSNCASTNSASVKRTNSWCFDEKLFLQSLYKVLVSVSETNSVILYLRDVERLLLQSQRLYNLFHRFLNKLSGSVLVLGSRMVDLENDCGDVDDRLTCLFRYSVEIRPPEDENHLVSWKAQLEEDMKMIQFQDNKNHIAEVLAANDLECDDLGSICHADTMVLSNYIEEIVVSAISYHLMNNRDPEYRNGKLLISSKSLSHGLSIFQEGNNEGKDTLKLETNAESSKEAPGDDAVGAKNESKSENSAAENRGEADKSVPIVKKDVENVPPQKAPEVLPDNEFEKRIRPEVIPANEIGVTFADIGSLDEIKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGTGKTMLAKAIANEAGASFINVSMSTITSKWFGEDEKNVRALFTLAAKVSPTIIFVDEVDSMLGQRTRVGEHEAMRKIKNEFMSHWDGLLTRNDERILVLAATNRPFDLDEAIIRRFERRIMVGLPSVESREMILRTLLSKEKAEDLDFKELATMTEGYSGSDLKNLCVTAAYRPVRELLQQERLKDLEKKQRELKEKEQEEEEKTETEMETETKNENENENDKKKENNSEDMTVTKEEEKEEQVIILRPLNMDDMRQAKNQVAASFASEGSVMNELKQWNELYGEGGSRKKQQLTYFL 867
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 6698916 6705964 - CmoCh02G011090.1 Cmo02g01109 376706

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo02g01109 867 PANTHER AAA ATPASE, PUTATIVE (AFU_ORTHOLOGUE AFUA_2G12920)-RELATED-RELATED 1 867 - -
Cmo02g01109 867 MobiDBLite consensus disorder prediction 762 811 - -
Cmo02g01109 867 PANTHER P-LOOP CONTAINING NUCLEOSIDE TRIPHOSPHATE HYDROLASES SUPERFAMILY PROTEIN 1 867 - -
Cmo02g01109 867 Gene3D - 694 778 - -
Cmo02g01109 867 MobiDBLite consensus disorder prediction 446 485 - -
Cmo02g01109 867 MobiDBLite consensus disorder prediction 183 229 - -
Cmo02g01109 867 Pfam ATPase family associated with various cellular activities (AAA) 562 692 IPR003959 GO:0005524|GO:0016887
Cmo02g01109 867 ProSitePatterns AAA-protein family signature. 665 684 IPR003960 GO:0005524|GO:0016887
Cmo02g01109 867 CDD AAA 560 693 - -
Cmo02g01109 867 Gene3D - 521 693 IPR027417 -
Cmo02g01109 867 SMART AAA_5 558 695 IPR003593 -
Cmo02g01109 867 Pfam AAA+ lid domain 714 757 IPR041569 -
Cmo02g01109 867 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 522 774 IPR027417 -
Cmo02g01109 867 Coils Coil 746 786 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo02g01109 - - - csv:101216426 1423.3
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo02g01109 Cmo16g00624 CCT
Cmo02g01109 Cmo16g00624 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo02g01109 Cmo-Chr2:6698916 Cmo16g00624 Cmo-Chr16:3064166 0 dispersed
Cmo15g01117 Cmo-Chr15:7769078 Cmo02g01109 Cmo-Chr2:6698916 0 wgd
Cmo02g01109 Cmo-Chr2:6698916 Cmo04g00759 Cmo-Chr4:3789816 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g63 Blo02g01127 . . Bda08g00498 Bpe05g00666 . . . . Cmo16g00624 . . . . . Cpe14g00486 Cpe05g00632 . . . . . . . Cla07g00737 Cam07g0790 Cec07g0855 Cco07g0825 Clacu07g0771 Cmu07g0780 Cre07g1131 . . Cone6ag0820 Cone9ag0819 . . . Cme07g01607 . . . . . . Bma05g00841 . . Cmo02g01109 . . Cma16g00575 . . . . . . . . . . . . . . . . . . . Csa04g00619 Chy07g01193 .
Vvi16g809 Blo06g01180 Blo15g00212 . . . . . . . . Cma02g01088 . Car02g00831 . . . . . . . . . . . . . . . . . . . Cone5ag0903 . . . . . . . . Bda06g00733 . . Bpe12g00487 . . . Cmo02g01109 . . . . . . . Bhi12g00765 . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001190 2 3 2 2 2 2 2 2 2 2 2 2 3 2 2 3 2 5 4 2 3 2 2 2 2 2 2 5 3 4 75
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo02g01109 Cmo_Chr02 FPKM 29.018982 35.995846 29.158073 27.365894 28.745813 32.388165 34.730728 13.366361 12.286707 13.674058