Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo02g01116 ATGGAGATCGATGGGCTATGTGTTATCTGCGCTGGTCTCGGAATCGTCGAAGAGGACGACAATGGTAATCGGATCGGTTACTCCAAGAGCGAATACTGTTTAGATAATTTGAAGGATTTGCTAAGGTTCTTGAGACGAGATGACCCGCAGACTCGCGATGTTTTTAAGCAAGTGTGTAAATGGAACATTGTGGCTAAAGATCTGATACCCATTATTGAATACTGTCAAGATGACCGTAATGCAGTCTTAAACGCAGTGAAGATTTTGGTGTTCCTCACAATGCCCGTTGAACCCACGTCAAATGATATTGCACAACAGATTGAATATTTGTGGGGCTTGAAGTCCTTAATCACATGCTGTAATGTTGTTGCCGTAGCTGTTTCACTTTTGGAGAGTCCGCTGGAAAATCTGGATTGTGAAACATTCTCAGAAGACGACTGGAAATTGGTGCAGCTGGTTATGACACTCTTCCGAAATGTTTTGGCTATTCAAGAAATCTCATTGCAGCAAAAGGCTGATGGATCAGCTTGTCAGTTAATATTGCTCAGAGACAAATTTCTGGAAGTTTTATTCCGGGAGAATGTAATGGACATAATATTGGTGATAACGCAACATATTGATGGCTCTTGCAGCCATCTCCGTCAAGACAAATTACTCTTTCTGGAAATATTTTATTTCATATTTTTGGGACAAGAGCCAGAGTTAATTGCAAAAGTATCTCAAAACAGCGACGAGGATAATGTAGAAACTGTATCTTCCGCCAATAGTCTGAAGTCTCTGATGGAGGAAGATAGAAGGAAGCTTTCTAGATCATACAATATGAACCGCCATTCTCAGTTCAGTGGAACTTTTACTCGACATACCTTGGATGGTTCGAAGTTAGTACTCAAAGGAAAGCCGTCGCCGACTTCTTGTAACAGTCTTAAACAACCTAAAGTTTGTCGAGGTCCAATAAAAAAGATTGCATGGGACCATGGACGATTAACTTCAAAAAACAGCAAACTTCTGCGGTTACTTCATGATTTTATAAACCAGTTTCTTTCAGGCGGCTACAATGCTTTGATGCAGTTGGTTCATGAAGATATTGAAAAGGAACATCATTCCATCCAGAACAACGATGTGGTTGTTTTTTTTCAGGTGGCACAGTTTGCTGTTTCTTTTCAGTATCACAAGTTCTCAACTTCAAAGTTAATTGAAGCTGATACTACTGAGGCTCAAACAGAACATGCTGATTCCACATTTTTCCAAGGTAACATGTGTGGTCCAATAGCCGCAACAATGAACGAGGCCATGTTTCAGCTAGTTGTTACAAAATGGCGCTATGCATTTGAAGGCTTAAAGGAAACTAGTGATTTTAAGTTTCTGTCTGCAGCTGGCTCTCTGATGAAAAATATGATTTGCATGTTAGATTTGGTGTTAAAGTTATTGCCAGAAGATTCGAAGGAACCTCAAACAGCTCGTATTCTACTTTACAAATTATTTTATGATCAGACAGATCAAGGGATCACTCAGTTCCTCTTAAATTTGCTCAAATCATTCAACACTCACAAACAACCCAAAAGTGATCTTGCAGATTTAGTTGAGATGATCTACAAAGTTGTACAGCTCATGGAGGACCTCCAAGCGCGTGGAACACTTCGGGTTTCTAAAAAATCAAGGAGGGGAAGAAAAGCAAAGTCAGCTAATAATAGGGATGTCAGACAGTCAGAAGATCAGGTAGCTGGGAATAAGACGGCCATAACCCATAATGAGAAATCAATAGATGCCGATGTTGGGGAGAACAATGACTTAAAAGCAAGTTCTGATGGTAAAGAAGAGATATCTATTACCGCGCCTGAACTGCTAAACTTGAACACGGGGAGTTTTGAAGGCAGTGTGTCACAGAGGGAGAACAACAAATTGAATGATGATTATAGCACAGCCGATTCTTCTGGTAATGAGCAGCAAAATAGAACTGTGGAAGTTGATCTTAAAGTATCAAGTCTAGTATCTACTTTTGCCAACAACAACATTATTCAGAAAATATGCTGGTTGCTTAAGTTTTACAAGAGCAATTCTACCAATACAAACCATTACATAATATGCATTTTACGGAGGATCACCGAGGATTTAGAGCTTTCTCCAATGCTGTACCAGTTGTCTCTTCTTCCCACATTTTATGATATTCTATCTCAACAGAAATCAAGTCCATGCAAGGAACATGCTAATATAGTTGATTTCCTGACAAGTCTGGTGAGAAAGATGCTAAGGAAGATAAAGAATCAGCCACTCCTTTTTGTGGAACTTCTGTTTTGGAAGACCCGAAAAGAATGCCATTACATTGATGCTGAGTACTTAGTGCATGAGCTTGGCTGTTGGAAGAAAAAAAATAAAGAGGAAAATTTTACTGGTGATGATGAAAATGGCTCGTTGATGGGCAAGCATTGGACTCCTAGAAGCATAGCCGATGCACTAGGTGAAGATGAAGCTGATGTTGTGATCACTAATGAGTTTGAAATTCATACTGAAGCAAAGTCTGATGAAGTCGAGAGAGGCCTTGAGTCTACCACCCTGGTTGATGAGATATACGGGAAAGAACACAACGAAAATGAGCTGGCTATGGATGATAAATCCAAAAGTCTTCCGAAAAGAAAGAGACTTGTTCTTGATGCTGCACTGGAGACTGAAATTAAAGATCTTTATGAGAAATTCAAGGAGGACAGGAACTGTAGCAGACTTATTGCAGAGAATCTTGGTACTGATGTCGAAGTTTCACCTGCTCAAGTTTCCAATAAGCTTAGACGGATGGGGTTAAAAGTTTCTCAAAGAAAGAGGAGGCAATATGCAGATGAAGCCTTTTCTGGTACCTCTAAAAACCTCAAGGGAGAAAGCAATGGGGTAGAAAGAAATAATCTACTCGACTCCGATGTTTTGGGGGAAAGTTCTTTGAGTCAACCTTCGCACACGAGAAAAAGAGTGGTCGCTTTTGATAAAGTATATGAAGAGAAGATCAGAGCTTTATATGAGCAGTTTAAAGATCATAAGAGATGTAGTTCTATGATTGCAAATGCGCTGGATGCTGGTAACAAATTCACTTCTGCACAAGTTTCTCGAAAGCTCAAGCAATTGGGTCTATATGTTTCTCATCAGAAGAGGTCGAGTGATGGTGATCACAATGATTCTGTTATGGACAAGGGATTTGAGAGTGATGATGAAACATTGCTTTCATTAATAAATAGGAAAAAAAGGAAGCATCTTGCAACAGAAAAGCTCAGTTCCATCTCAACGCAGAGCATATTAATTGCTGAAGAATCTGAAGGTGTAGATGCAGAAATGTCTACGCAATGGGAGGACAGCAACCAAGCGAGTAGGTTGGAACCTATGGGAGTTGGTAAAGTGCGTTCAGACGATGTTCAGTTGAATGACTTTACAGAAGTTGAAGGTAAGGATGCTGAAGCTGGCGTCAGTATGGATGATGAGCTTGCAGATTCAGAAGGTGAAATGGATTCTAATGTGCATCGTGCAAGTGCTACAACTGGAAGAAAGTTTAGGATTGTTGATCTTGAGGATGAAGATTGA 3558 39.97 MEIDGLCVICAGLGIVEEDDNGNRIGYSKSEYCLDNLKDLLRFLRRDDPQTRDVFKQVCKWNIVAKDLIPIIEYCQDDRNAVLNAVKILVFLTMPVEPTSNDIAQQIEYLWGLKSLITCCNVVAVAVSLLESPLENLDCETFSEDDWKLVQLVMTLFRNVLAIQEISLQQKADGSACQLILLRDKFLEVLFRENVMDIILVITQHIDGSCSHLRQDKLLFLEIFYFIFLGQEPELIAKVSQNSDEDNVETVSSANSLKSLMEEDRRKLSRSYNMNRHSQFSGTFTRHTLDGSKLVLKGKPSPTSCNSLKQPKVCRGPIKKIAWDHGRLTSKNSKLLRLLHDFINQFLSGGYNALMQLVHEDIEKEHHSIQNNDVVVFFQVAQFAVSFQYHKFSTSKLIEADTTEAQTEHADSTFFQGNMCGPIAATMNEAMFQLVVTKWRYAFEGLKETSDFKFLSAAGSLMKNMICMLDLVLKLLPEDSKEPQTARILLYKLFYDQTDQGITQFLLNLLKSFNTHKQPKSDLADLVEMIYKVVQLMEDLQARGTLRVSKKSRRGRKAKSANNRDVRQSEDQVAGNKTAITHNEKSIDADVGENNDLKASSDGKEEISITAPELLNLNTGSFEGSVSQRENNKLNDDYSTADSSGNEQQNRTVEVDLKVSSLVSTFANNNIIQKICWLLKFYKSNSTNTNHYIICILRRITEDLELSPMLYQLSLLPTFYDILSQQKSSPCKEHANIVDFLTSLVRKMLRKIKNQPLLFVELLFWKTRKECHYIDAEYLVHELGCWKKKNKEENFTGDDENGSLMGKHWTPRSIADALGEDEADVVITNEFEIHTEAKSDEVERGLESTTLVDEIYGKEHNENELAMDDKSKSLPKRKRLVLDAALETEIKDLYEKFKEDRNCSRLIAENLGTDVEVSPAQVSNKLRRMGLKVSQRKRRQYADEAFSGTSKNLKGESNGVERNNLLDSDVLGESSLSQPSHTRKRVVAFDKVYEEKIRALYEQFKDHKRCSSMIANALDAGNKFTSAQVSRKLKQLGLYVSHQKRSSDGDHNDSVMDKGFESDDETLLSLINRKKRKHLATEKLSSISTQSILIAEESEGVDAEMSTQWEDSNQASRLEPMGVGKVRSDDVQLNDFTEVEGKDAEAGVSMDDELADSEGEMDSNVHRASATTGRKFRIVDLEDED 1185
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 6782599 6792220 - CmoCh02G011160.1 Cmo02g01116 376713

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo02g01116 1185 MobiDBLite consensus disorder prediction 567 582 - -
Cmo02g01116 1185 MobiDBLite consensus disorder prediction 547 605 - -
Cmo02g01116 1185 Pfam Timeless protein 27 285 IPR006906 -
Cmo02g01116 1185 PANTHER TIMEOUT/TIMELESS-2 3 1169 IPR044998 -
Cmo02g01116 1185 MobiDBLite consensus disorder prediction 625 649 - -
Cmo02g01116 1185 PANTHER PROTEIN TIMELESS HOMOLOG 3 1169 - -
Cmo02g01116 1185 MobiDBLite consensus disorder prediction 583 603 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo02g01116 K03155 TIMELESS; timeless - csv:101218315 1935.61
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo02g01114 Cmo-Chr2:6759977 Cmo02g01116 Cmo-Chr2:6782599 1.13E-36 proximal
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g835 . . . . . . . . . . . . . . . Cpe05g00623 . . . . . . . . . . . . . . . . . . . . . Chy09g01406 . . . . . . . . . . Cmo02g01116 . . . . . . . . . . . . . . . . . . . . . . . . Cme09g01951
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011825 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 30
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo02g01116 Cmo_Chr02 FPKM 53.383732 57.42696 57.852306 57.409454 56.732468 55.030231 54.084888 113.145912 112.928169 108.726746