Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo02g01117 ATGTGGATGCTTCTGGTAACTCTGTCGCTCATCTTCTCGTTTGTTGTGAAGTCATTTTTATTTCCCTCACCGCATGGCCCTTACAACCTCCCGCCGGGGCCGCCGGCGTTACCAATTGTAACAAACTTCCTATTGCTCCGCCGCTCGCCGCTTCACCTTGAGTCCGTGCTGCGCACCTTCTTCGCTAAATACGGCCCAATCATCACCCTCCACATAGGCCCATCCCCGACCGTTTTCATTGCCGACCGCTCCATCGCCCACAAGGCTCTTGTCCAAAACGGCGCCGTCTTTGCCGACCGTCCCCTGTTCCTCTCAATCGACAAGATTGCTGATTCCGCCAGCCTCCACAACATCACATCCGCCCCTTATGGCTCGACCTGGCGCCTTCTCCGCCGCAATCTCGCGGCGGAGATTCTCCACCCTTCGCGGGTCAGGGCTTATTCCCAAGCTCGGAGGTGGGTTTTGGGTAATCTGGTAAGGCGTCTTTTGTGTCGTGGGTGGGAGGAGTGTGTGGTTGTGGAGCATTTTCAGTCGGCTATGTTTAGTTTGTTGGTTTTGATGTGCTTTGGAGACAAATTGAATGAGAAAGAGATAATGGAAATTCAACAAGTGCAGCAAGAGATGTTGGTGAATCTTCAGCGCTTTGTTCTGCTTAATTTCTGGCCTAAGTTGATGAAGATTTTGCTTCGAAGCCGGTGGAAGGCTTATTTACACCTCAAAGCCAAGCAACAAAAGGTTCTAATGCCTTTTATCAAAGCACGAGAGAAGGCTAAACATGAAAGAGCAAAAGAAGAAGAACATGTGGTATCATATGTGGATACATTACTCGATTTGCAGCTGACCCACGAGAATAGAAAGCTTAAAGATGAAGAAATGGTGAACTTATGCTCGGAGTTTCTCAACGCCGGGACCGACACCACCGCGACAACCTTGCAATGGATAATGGCAAACCTAGTCAAATATCCAGAAATCCAACATAAACTCTATGAAGAAATCAAAGGAGTTATGAAGGAATCACAACAACACGGATCAAAGGTGGAAGAAGAAGTGAAGGAAGAAGATTTGGAGAAGCTTCCATATCTGAAAGCTGTTGTTCTAGAAGGATTACGACGACACCCGCCGGGGCATTTCGTGTTACCGCACGCCGTGAAAGAAGACACGATGTTGGAGAATTATTTCATACCTAAAAATGGGACGGTGAATATCTTGGCAGCGGAGATGGGGTGGGATCCTGAAGTGTGGGAGGATCCGATGGCGTTTAAGCCGGAGAGGTTCGTGGGCGGCGGTGGAGAGGCGGAGGCGATGGCGTTCGACATAACGGGGAGCAAGGAGATTAAGATGATGCCATTTGGTGTAGGGAGGAGAATGTGTCCGGCAGCTGGTTTGGCAATGCTTCATTTGGAATATTTTGTGGCAAATTTGGTTTGGCGATTTGAATGGAAAGCTGTGGAAGGAGTCGAGGTTGATCTGTCGGAGAAGATGGAGTTCACCATTGTTATGAACAACCCTCTCAAACCCCACATTCGTCCAAGATTTTAG 1539 48.86 MWMLLVTLSLIFSFVVKSFLFPSPHGPYNLPPGPPALPIVTNFLLLRRSPLHLESVLRTFFAKYGPIITLHIGPSPTVFIADRSIAHKALVQNGAVFADRPLFLSIDKIADSASLHNITSAPYGSTWRLLRRNLAAEILHPSRVRAYSQARRWVLGNLVRRLLCRGWEECVVVEHFQSAMFSLLVLMCFGDKLNEKEIMEIQQVQQEMLVNLQRFVLLNFWPKLMKILLRSRWKAYLHLKAKQQKVLMPFIKAREKAKHERAKEEEHVVSYVDTLLDLQLTHENRKLKDEEMVNLCSEFLNAGTDTTATTLQWIMANLVKYPEIQHKLYEEIKGVMKESQQHGSKVEEEVKEEDLEKLPYLKAVVLEGLRRHPPGHFVLPHAVKEDTMLENYFIPKNGTVNILAAEMGWDPEVWEDPMAFKPERFVGGGGEAEAMAFDITGSKEIKMMPFGVGRRMCPAAGLAMLHLEYFVANLVWRFEWKAVEGVEVDLSEKMEFTIVMNNPLKPHIRPRF 512
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 6793022 6795386 - CmoCh02G011170.1 Cmo02g01117 376714
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo02g01117 512 CDD RRM_SF 54 105 - -
Cmo02g01117 512 PRINTS E-class P450 group I signature 61 80 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo02g01117 512 PRINTS E-class P450 group I signature 447 457 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo02g01117 512 PRINTS E-class P450 group I signature 311 337 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo02g01117 512 PRINTS E-class P450 group I signature 362 380 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo02g01117 512 PRINTS E-class P450 group I signature 85 106 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo02g01117 512 PRINTS E-class P450 group I signature 403 427 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo02g01117 512 PRINTS E-class P450 group I signature 457 480 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo02g01117 512 PRINTS E-class P450 group I signature 291 308 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo02g01117 512 PRINTS E-class P450 group I signature 179 197 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo02g01117 512 PANTHER CYTOCHROME P450 5 505 - -
Cmo02g01117 512 Gene3D Cytochrome P450 26 512 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo02g01117 512 PRINTS P450 superfamily signature 302 319 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo02g01117 512 PRINTS P450 superfamily signature 363 374 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo02g01117 512 PRINTS P450 superfamily signature 448 457 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo02g01117 512 PRINTS P450 superfamily signature 457 468 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo02g01117 512 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 450 459 IPR017972 GO:0005506|GO:0016705
Cmo02g01117 512 PANTHER FLAVONOID 3'-MONOOXYGENASE-RELATED 5 505 - -
Cmo02g01117 512 Pfam Cytochrome P450 31 502 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo02g01117 512 SUPERFAMILY Cytochrome P450 31 511 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo02g01117 Cmo-Chr2:6793022 Cmo15g01108 Cmo-Chr15:7441035 0 dispersed
Cmo17g01339 Cmo-Chr17:10477015 Cmo02g01117 Cmo-Chr2:6793022 6.29E-173 transposed
Cmo15g01107 Cmo-Chr15:7436843 Cmo02g01117 Cmo-Chr2:6793022 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo02g01117 K24184 - csv:101218555 710.679