Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo02g01122 ATGAGCTTCAAAAGGGACCTTGAGCTTGTCGTCTTTGTTTTCTCTGCAGTCTTCTGGTTTGCAGCGAACGTTTATCCGGTGATGTCGGAGCCCATCAAAGACAAGGAAGCTTTGCTTAATTTTCTCAACAAGATGGATCACTCACACTCGCTCAATTGGAAGAAGAGCACTTCTTTGTGCAAAGAATGGATGGGAGTTCAATGCAAAAATGATGAATCCCAAGTTGTAGTTCTTAGATTGGCTGAAGTTGGCTTACACGGTTCGATCCCGATCAACACTCTCGGTCGGCTATTGGGACTTGAAACTCTAAGCCTTGGATCAAATTACATATCAGGGCCTTTCCCTTCTGACTTCCTAAAGCTGAGAAATCTCAGTTCACTCTACTTGCAAAACAACAAGTTCTCCGGTCCATTGCCATTGGATTTCTCTGTATGGAAGAATCTCAACATCATCGATCTGTCAAACAATGCCTTCAATGGGAGCATCCCTCGCTCAATTTCGAACACGACACATCTAACGACATTAAACCTTGCCAATAACTCACTCTCTGGTGAGATTCCAGACAACCTTCCTAGTTTGCAAGAGTTGGATCTTTCAAACAACAATCTCACAGGGTATGTCCCTCAGTCCCTTAAAAAATTTCCAAGTTGGGCATTCTATGGTAACAACCTCATGCTAAAAAATGCCGTTTCTCCGGCTCACGAACCGGTGCCGAGTACTCGACCATTGAAGAAAGGCACAACATCACTTGGTGAAGCAGCAATTTTAGGCATTATAATTGGAGGTTCTGCAACGGGGTTAGTCATAGCAGTCATTTTGATGGTTATATGTTGCTCAAACAGAGGAAGACTAAAAAACAAAGCCTCATCAAAGCTGGACAAGCAAGAACAGTTTGTGAACAAAAGGGTGTCTGAGACACAAAACAACAACCTCAAGTTTTTTCGGAGTCACGGCCTCGAGTTCGACTTGGAGGACTTGTTGAGGGCGTCTTCCGAGGTGCTCGGGAAGGGGATGTCGGGGACGACGTATAAGGCGACGCTAGAAGACGGCAATGCCGTGGCAGTGAAGAGGTTGAAGGAAGTGTGTGTTTCAAAGAAGGAATTTGAGCAACAGATGGAGGTGCTTGGGAGCATTGATCATGAAAATGTGTGTGGTCTAAGGGCATATTATTATTCAAAGGATGAGAAACTCATGGTGTTTGAGTTCTATCAACATGGAAGTGTCTCTGCAATATTGCATGTTGCGAGAGAGAAAGGACAGTCACCTCTAGATTGGGAAACTCGACTCCGAATCGCCATTGGCGCAGCCAAAGGAATCGCTCACATCCACTCTGAAGCCTGCGGCAAGCTCGTCCATGGAAACATCAAGGCCTCAAACGTTTTTCTCAACTCCGCCGGTTACGGATGCATTGCCGACGTCGGCGTTGCCGCTCTGATGAACCTCATGGCCCCGGCGGCAACCAGAGCCGCCGGATACCGCGCTCCCGAACTCAAAGATTCACGCAAAGCGTCTCAAGCCTCCGATACCTACAGCTTCGGCGTCGTGCTTCTGGAACTCCTCACTGGAAAATTTCCACTGCATACGAAGTGTGGCGGCGGCGGCGGCGGGGATCAGATCATCCACCTTGTGCGGTGGGTGAACGCGGTGGTTCGAGAGGAGTGGACGGCGGAGGTGTTTGATGTGGAGCTTTTGAGATATCCGAACATAGAGGAGGAGATGTTAGAGACGCTGCAAATAGCGCTATCTTGTGTAGGAAGAGTTCCGGATGATCGACCGTCAATGGCGGATGTGGCAGCTCGGTTAGAGGGAGTTCGCCAGGTGAGCGGCGGAGGAAACCAACCGGCGCCGCCGCCAGCATTGCCACGTGGAGCGGAGGAGGTGATCCAGATTCAGGTGAATGTGGATGAGGGTGAAGAGGGAGCTCCGTCGAAATCGAATTGA 1941 48.89 MSFKRDLELVVFVFSAVFWFAANVYPVMSEPIKDKEALLNFLNKMDHSHSLNWKKSTSLCKEWMGVQCKNDESQVVVLRLAEVGLHGSIPINTLGRLLGLETLSLGSNYISGPFPSDFLKLRNLSSLYLQNNKFSGPLPLDFSVWKNLNIIDLSNNAFNGSIPRSISNTTHLTTLNLANNSLSGEIPDNLPSLQELDLSNNNLTGYVPQSLKKFPSWAFYGNNLMLKNAVSPAHEPVPSTRPLKKGTTSLGEAAILGIIIGGSATGLVIAVILMVICCSNRGRLKNKASSKLDKQEQFVNKRVSETQNNNLKFFRSHGLEFDLEDLLRASSEVLGKGMSGTTYKATLEDGNAVAVKRLKEVCVSKKEFEQQMEVLGSIDHENVCGLRAYYYSKDEKLMVFEFYQHGSVSAILHVAREKGQSPLDWETRLRIAIGAAKGIAHIHSEACGKLVHGNIKASNVFLNSAGYGCIADVGVAALMNLMAPAATRAAGYRAPELKDSRKASQASDTYSFGVVLLELLTGKFPLHTKCGGGGGGDQIIHLVRWVNAVVREEWTAEVFDVELLRYPNIEEEMLETLQIALSCVGRVPDDRPSMADVAARLEGVRQVSGGGNQPAPPPALPRGAEEVIQIQVNVDEGEEGAPSKSN 646
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 6813662 6817655 - CmoCh02G011220.1 Cmo02g01122 376719
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo02g01122 646 Pfam Protein kinase domain 331 597 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo02g01122 646 SUPERFAMILY L domain-like 42 216 - -
Cmo02g01122 646 ProSiteProfiles Protein kinase domain profile. 328 604 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo02g01122 646 PANTHER LRR RECEPTOR-LIKE KINASE 21 612 - -
Cmo02g01122 646 Gene3D Ribonuclease Inhibitor 33 144 IPR032675 -
Cmo02g01122 646 Pfam Leucine Rich Repeat 192 214 IPR001611 GO:0005515
Cmo02g01122 646 PANTHER OS05G0588300 PROTEIN 21 612 - -
Cmo02g01122 646 Pfam Leucine rich repeat N-terminal domain 33 68 IPR013210 -
Cmo02g01122 646 PRINTS Leucine-rich repeat signature 172 185 - -
Cmo02g01122 646 PRINTS Leucine-rich repeat signature 190 203 - -
Cmo02g01122 646 SUPERFAMILY Protein kinase-like (PK-like) 331 602 IPR011009 -
Cmo02g01122 646 Gene3D Transferase(Phosphotransferase) domain 1 404 611 - -
Cmo02g01122 646 MobiDBLite consensus disorder prediction 605 624 - -
Cmo02g01122 646 Gene3D Ribonuclease Inhibitor 145 231 IPR032675 -
Cmo02g01122 646 ProSitePatterns Protein kinases ATP-binding region signature. 334 356 IPR017441 GO:0005524
Cmo02g01122 646 Gene3D Phosphorylase Kinase; domain 1 293 402 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo02g01122 Cmo15g01332 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g01131 Cmo-Chr1:9318615 Cmo02g01122 Cmo-Chr2:6813662 5.48E-65 dispersed
Cmo02g01122 Cmo-Chr2:6813662 Cmo02g01438 Cmo-Chr2:8481763 0 dispersed
Cmo16g00084 Cmo-Chr16:387197 Cmo02g01122 Cmo-Chr2:6813662 0 wgd
Cmo18g01322 Cmo-Chr18:12578033 Cmo02g01122 Cmo-Chr2:6813662 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
74129 PF00069 Pkinase 8.10E-32 CL0016 Cmo PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo02g01122 - - csv:101219980 1018.84