Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo02g01137 ATGACTTATCTGCAGGAGAAGATTGTGCGGTTTCCGGACCGGAGTTCAGATAAAACTTCAATGGGGTTATATTCTGCGGATAACACTTTAAATGTCGGAATAAATGGGACAAGAGCTGACTTAGTTTCAGAAAAGCCTCACAAAGAATTGGAAACTGGTTCTTACAGGATTAATAGAATTAAGAAATCCTTGAAATCATCTTCTTTCAATAAATTTATGTCCAAAAGTTTTGGAACACGAAGACAAGTACTTGATCCACAGGGGCCCTTTCTCCAGAAGTGGAATAAGATATTTGTGTTGTCTTGTGTGATTGCAGTCTCGTTGGATCCTTTGTTCTTTTATGTCCCTGTGATGGACGATGATCAGAAATGTCTTGGGTTGGATAAGAAGATGGAGATTACGGCTAGTGTGTTACGTTCATTCACCGACATATTTTATATATTACATATTGTTTTGCAATTTCGTACGGGATTTATTGCTCCTTCTTCTCGAGTATTTGGAAGAGGTGTTCTAGTTGAAGATGCTTGGGCAATAGCAAAGAGATATCTGTCGTCATACTTTTTGATCGACATTCTTGCAGTCCTCCCACTTCCACAAGTAGTGATCCTGATAATTGTTCCAAACATGAGAGGCTCGAGGTCGTTGAATACCAAGGACTTGCTGAAATTCATTGTTTTCTTCCAATACGTGCCTCGGTTTATTAGAATCTATCCTTTATATAAAGAAGTTACAAGAACATCTGTACTCACTGAAACTGCATGGGCTGGAGCTGCATTTAATCTCTTTCTTTACATGCTGGCAAGTCATGTCTTTGGAGCATTCTGGTACTTGTTTTCGATAGAACGGGAAACTACATGCTGGCAGCAGGCCTGTCACAATATCAGCTGTGATTCTAATACACTATATTGTGATGTGGCTGTCAATCTACGAAATAACTCGTTTTTAAACATTTCATGTCCGCTAGTGGATGGAGACGAAGTCAAACCTCCTTTTGATTTTGGGATATTTCTTGATGCTCTTAATTCTCGTGTTGTTGAGTCGATGAATTTTCCACAGAAGTTCTTTTACTGTTTCTGGTGGGGTCTGAGAAATCTAAGTTCCCTGGGTCAAAATCTCCAAACAAGCACATACGTATGGGAAATTTTGTTTGCTGTTTTCATCTCCATCTCTGGCTTAGTCCTGTTTTCATTTCTCATTGGGAACATGCAGACATATTTGCAATCCACCACTACAAGATTGGAAGAAATGAGGGTTAGAAGGAGAGATGCAGAACAATGGATGTCCCACCGTTTACTCCCTGAGAGCCTCCGGGAGCGAATCAGGAGGTACGAACAGTACAAGTGGCAGGAAACTAGAGGGGTTGATGAAGAGAATCTGGTTCGAAATCTTCCGAAAGATCTCAGAAGGGACATAAAACGCCATCTCTGCTTGTCTCTGCTAATGAGGGTACCGATATTTGAAAAAATGGACGAACAACTGCTGGATGCTATGTGTGACCGTCTCAAGCCAGTACTATACACAGAGGAAAGTTATATCGTTCGGGAAGGAGACCCAGTCGATGAGATGATCTTCATAATGCGTGGCAAGTTATTGTCTGTAACTACAAATGGTGGAAGAACTGGTTTCTTTAATTCTGAACACCTCAAGGCAGGGGATTTCTGTGGAGAAGAGCTACTGACATGGGCTCTGGATCCACATTCCTCATCCAATCTACCAATTTCAACAAGAACTGTTCGAACTCTTTCAGAAGTTGAAGCATTTGCTTTGAAGGCAGATGACTTAAAGTTTGTAGCCTCACAGTTCCGTAGACTTCACAGCAAGCAGCTGCGGCACACTTTCAGGTTTTATTCACAGCAATGGAGGACATGGGCAGCGTGTTTTATACAAGCAGCGTGGCGTCGATACAGAAGAAAGAAACACGAACAGGCTCTGTTGGAAGAAGAGAACAGGTTAAAAGATGCATTGGCCAAAACAGGTGGGAGTTCTCCTAGTTTAGGTGCTACCATCTATGCATCCAGATTTGCAGCTAACATCCTAAGAACGATTCGACGCACAAGCTCACGCAAGGCCAGGATTCCCGAGAGAATACCGCCCATGTTGCTTCAGAAACCAGCAGAGCCCGACTTTACCTCTGAAGAGAATAGTTGA 2148 42.09 MTYLQEKIVRFPDRSSDKTSMGLYSADNTLNVGINGTRADLVSEKPHKELETGSYRINRIKKSLKSSSFNKFMSKSFGTRRQVLDPQGPFLQKWNKIFVLSCVIAVSLDPLFFYVPVMDDDQKCLGLDKKMEITASVLRSFTDIFYILHIVLQFRTGFIAPSSRVFGRGVLVEDAWAIAKRYLSSYFLIDILAVLPLPQVVILIIVPNMRGSRSLNTKDLLKFIVFFQYVPRFIRIYPLYKEVTRTSVLTETAWAGAAFNLFLYMLASHVFGAFWYLFSIERETTCWQQACHNISCDSNTLYCDVAVNLRNNSFLNISCPLVDGDEVKPPFDFGIFLDALNSRVVESMNFPQKFFYCFWWGLRNLSSLGQNLQTSTYVWEILFAVFISISGLVLFSFLIGNMQTYLQSTTTRLEEMRVRRRDAEQWMSHRLLPESLRERIRRYEQYKWQETRGVDEENLVRNLPKDLRRDIKRHLCLSLLMRVPIFEKMDEQLLDAMCDRLKPVLYTEESYIVREGDPVDEMIFIMRGKLLSVTTNGGRTGFFNSEHLKAGDFCGEELLTWALDPHSSSNLPISTRTVRTLSEVEAFALKADDLKFVASQFRRLHSKQLRHTFRFYSQQWRTWAACFIQAAWRRYRRKKHEQALLEEENRLKDALAKTGGSSPSLGATIYASRFAANILRTIRRTSSRKARIPERIPPMLLQKPAEPDFTSEENS 715
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 6889071 6894808 + CmoCh02G011370.1 Cmo02g01137 376734
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo02g01137 715 ProSiteProfiles cAMP/cGMP binding motif profile. 485 569 IPR000595 -
Cmo02g01137 715 Gene3D Helix hairpin bin 411 476 - -
Cmo02g01137 715 Gene3D - 95 409 - -
Cmo02g01137 715 SUPERFAMILY Voltage-gated potassium channels 85 407 - -
Cmo02g01137 715 Coils Coil 637 657 - -
Cmo02g01137 715 Pfam Cyclic nucleotide-binding domain 505 596 IPR000595 -
Cmo02g01137 715 SMART cnmp_10 485 616 IPR000595 -
Cmo02g01137 715 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 7 712 - -
Cmo02g01137 715 Gene3D Jelly Rolls 483 603 IPR014710 -
Cmo02g01137 715 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL-LIKE PROTEIN 7 712 - -
Cmo02g01137 715 CDD CAP_ED 485 616 IPR000595 -
Cmo02g01137 715 Pfam Ion transport protein 94 412 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Cmo02g01137 715 SUPERFAMILY cAMP-binding domain-like 414 607 IPR018490 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo02g01137 Cmo-Chr2:6889071 Cmo05g01050 Cmo-Chr5:8475255 0 dispersed
Cmo18g01336 Cmo-Chr18:12664245 Cmo02g01137 Cmo-Chr2:6889071 0 dispersed
Cmo18g01337 Cmo-Chr18:12669624 Cmo02g01137 Cmo-Chr2:6889071 0 dispersed
Cmo13g01147 Cmo-Chr13:9272262 Cmo02g01137 Cmo-Chr2:6889071 8.21E-140 transposed
Cmo14g02168 Cmo-Chr14:15560949 Cmo02g01137 Cmo-Chr2:6889071 0 wgd
Cmo16g00069 Cmo-Chr16:313082 Cmo02g01137 Cmo-Chr2:6889071 1.28E-155 wgd
Cmo18g01335 Cmo-Chr18:12659717 Cmo02g01137 Cmo-Chr2:6889071 0 wgd
Cmo02g01137 Cmo-Chr2:6889071 Cmo06g01044 Cmo-Chr6:8113022 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo02g01137 K05391 - csv:101221781 1330.08