Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo02g01138 ATGGAGGCCGACGCAGGAAGAGGTTTGGGATGCCAGAAGACTATGGATGGGAAGGCGAGTAATGGGATTGTTCCAAAGAAGGAGATCCCTTCTTGTTGTTTAAAGGCCATGGCTTCAGCCCCTGAGCTTGATGCCAAGTGCCATTCCACTGTTGTTTCTGGCTGGTTCTCAGAACATCAGTCTGCTTCTGATAAGGGAAACAAAATGGTCTACTTCAACAATCCCATGTGGCCTGGTGAGAAGTATTTGAAGCTACTTATGGCAAGCCTAGTTTCAGGCTACGAAACGAGAGAAGCACACTCACTGCAAGTAGAGTCTATACTGTTTCAAGGGAGGTCAGAGTACCAAGAAGTAGTTGTTTTCAAGTCCACTTCATATGGGAAAGTGCTTGTTCTAGATGGTATTGTTCAGTTAACTGAGAAAGATGAGTGTGCCTACCAGGAGATGATAACTCACCTGCCCCTCTGTTCAATTCCATCTCCCAAAACGGTGACTTCATATATTCAAACCAACGTTCTTGTTGTTGGTGGTGGTGATGGTGGAGTTCTAAGGGAAGTCGCTCGCCACAACTCTGTAGAGCATATCGATATATGTGAGATAGATAAGATGGTCATTGATGTATCCAAGGAGTTCTTTCCCGAGTTAGCTAAAGGATTTGAGGATCCCCGTGTCCACCTTCACGTTGGAGATGCTGTTGATTTCCTACGGCGTGCACCAAAAGAGAAATACGATGCTATCATAGTTGATTCCTCGGACCCTGTTGGACCTGCTCAGGAGCTAGTTGAGAAGCCATTCTTTGAGACGATAGCAAAAGCATTGAAACCTGGTGGTGTTCTCTGTAACATGGCAGAAAGTATGTGGCTACATACACATCTTATTCAAGATATGATCTCTATTTGCCGTAAAATTTTCAAAGGGTCTGTTCATTATGCATGGGGCAGCGTTCCAACTTATCCAAGTGGTGTGATAGGTTTTCTGCTATGCTCAACTGAAGGGCCACCTGTTGATTTTAAGAATCCTATCAATCCCATCGAGAAGCTAGAAAGCTCAGCCGAGTATGAAAGAGAGCTCAAGTTCTACAATTCAGAGATACACTCTGCTGCTTTTGCTTTGCCATCGTTTCTGAGGAGGGAGGTGAAGGCGCTTGTTGATTCTCCAGACCCGGCACAGGACTGA 1176 45.24 MEADAGRGLGCQKTMDGKASNGIVPKKEIPSCCLKAMASAPELDAKCHSTVVSGWFSEHQSASDKGNKMVYFNNPMWPGEKYLKLLMASLVSGYETREAHSLQVESILFQGRSEYQEVVVFKSTSYGKVLVLDGIVQLTEKDECAYQEMITHLPLCSIPSPKTVTSYIQTNVLVVGGGDGGVLREVARHNSVEHIDICEIDKMVIDVSKEFFPELAKGFEDPRVHLHVGDAVDFLRRAPKEKYDAIIVDSSDPVGPAQELVEKPFFETIAKALKPGGVLCNMAESMWLHTHLIQDMISICRKIFKGSVHYAWGSVPTYPSGVIGFLLCSTEGPPVDFKNPINPIEKLESSAEYERELKFYNSEIHSAAFALPSFLRREVKALVDSPDPAQD 391
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 6895248 6900444 - CmoCh02G011380.1 Cmo02g01138 376735

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo02g01138 391 CDD AdoMet_MTases 184 279 - -
Cmo02g01138 391 ProSitePatterns Polyamine biosynthesis (PABS) domain signature. 172 185 IPR030373 -
Cmo02g01138 391 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 92 379 IPR029063 -
Cmo02g01138 391 PANTHER SPERMINE SYNTHASE 1 387 - -
Cmo02g01138 391 PANTHER SPERMIDINE/SPERMINE SYNTHASE 1 387 IPR001045 GO:0003824
Cmo02g01138 391 Gene3D Vaccinia Virus protein VP39 138 383 IPR029063 -
Cmo02g01138 391 TIGRFAM speE: spermidine synthase 97 374 IPR001045 GO:0003824
Cmo02g01138 391 Pfam Spermidine synthase tetramerisation domain 97 140 IPR035246 -
Cmo02g01138 391 Gene3D Spermidine synthase, tetramerisation domain 46 137 IPR037163 -
Cmo02g01138 391 Hamap Polyamine aminopropyltransferase [speE]. 54 380 IPR001045 GO:0003824
Cmo02g01138 391 ProSiteProfiles Polyamine biosynthesis (PABS) domain profile. 75 330 IPR030374 -
Cmo02g01138 391 Pfam Spermine/spermidine synthase domain 143 338 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo02g01138 K00797 speE, SRM, SPE3; spermidine synthase [EC:2.5.1.16] - csv:101222254 647.506
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo02g01138 Cmo18g01338 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo02g01138 Cmo-Chr2:6895248 Cmo04g01804 Cmo-Chr4:9088749 1.20E-153 dispersed
Cmo18g01338 Cmo-Chr18:12673980 Cmo02g01138 Cmo-Chr2:6895248 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g882 . Blo15g00090 . . . Bpe07g01011 . . . Cmo18g01338 Cma02g01110 . . . Sed05g0421 Cpe05g00606 . Bhi01g01471 Tan01g0127 Cmetu09g1394 Lac11g0146 Hepe07g0078 Mch10g0078 . Cla01g00051 Cam01g0048 Cec01g0048 Cco01g0050 Clacu01g0051 Cmu01g0048 Cre09g2459 Cone1ag0965 . Cone14ag0022 Cone15ag0025 . Csa05g00058 Chy09g01431 Cme06g01114 . . Bda06g00781 . . . . Bma12g01194 . Cmo02g01138 . . Cma18g01308 . Car18g01222 Cpe09g00034 . Bhi12g00627 . . . . . Lcy12g0124 Cla05g00957 Cam05g1048 Cec05g1053 Cco05g1047 Clacu05g1041 Cmu05g0991 Cre05g1068 Lsi09g00028 . Chy06g01236 Cme09g01974
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002366 1 2 1 2 1 2 2 2 2 2 2 2 2 2 2 2 2 3 2 2 2 2 2 1 2 2 2 5 5 1 62
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo02g01138 Cmo_Chr02 FPKM 15.696665 15.531379 14.41087 14.780707 21.015869 20.969337 20.378262 20.260918 19.191591 19.655972