Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo02g01145 ATGAACAACTACAACAAGCTCCACTCCTCCGCCTCCGGCGACACGCCGGCCACCTTCCAAGTTTCTCATACTCCCAATCCACCGTCCTCCTCCGCCTCACGCCGCCGCACCCGAATTCTCTTCGTTTCCCTTATCTCGATCCTTCTCATCACTGCGTCCGCCGTCTCGGCCGCCGTCCTCCTCCATTCCCAAAGCTCCCATTTCCCCCACAACAAACCAACCCAAGCCATCTCTCACGCCTGCAGCCACACTCTCTACCCTTCTCTCTGCCGCTCTTCTCTCCTCTCCTTCCCCGGCTCTCTCTCCGCCGACGTCCACCGCCTCGTTCATATCTCTCTCAACCTAACTCTCCAACATCTCACTAAAGCCCTCTACGCCTCTTCTCAAATCCCCGTTTTTCAAATCTCCAATAACCCTTTAGCTCACTCTGCTTACCAAGATTGTATTGAGCTTCTAAACGACGCCGTTGATGCCTTCTCTCTCTCTCTCTTCTCCACCTCAGCTTCTAACCATGACATCATGACGTGGCTTAGTGCTGCGTTGACTTATCATGACACGTGTAGTGATGGATTTGCGGATGTGGATGACCCGGTCAAGGATCAAATGGCGGCGAGGCTGAGTGATTTGTCGGAGATGATTAGTAATTCTTTGGCTATTTTTTCTGGGTATGGTGAGGGGTTGCCGGTGCAGAATAGGCGGCGGTTGATGGAGAGTGATAGGGAGTGGGCGGCGGAGAATGGTGTCGCGGTGGCGGAGGGGGAGTTTCCCGGGTGGGTTAGTGGGAAAGATAGGCGGCTTTTGGCTGCTCCCATTTCGGCCATTCAGGCGGATATTGTTGTTGCAAAGGATGGGAGTGGGAAGTTCAAGACGGTGGCTGAGGCCATTGAGGCGGCGCCGTCGTCTAGTGGTCGACGAATCGTTATCTACATTAAGGCTGGAAAGTACGAAGAAGAGAATTTGAAGGTGGGAAGGAAGAAGACAAACTTGATGTTTGTGGGAGATGGGAAGGGCATAACCGTCATTTCAGGTGGCAAAAGCGTTTTTGACAAAGTTACCACTTTTCGCACCGCCACCTTTGCCGGTTCTGGGACAGGAATAATTTTACGAGATATGACTTTCGAGAACACGGCAGGGCCAAGCAAGCACCAAGCAGTGGCACTTCGTGTGAGTGCAGACCATGCGGTGGTGTATCGTTGCAACATAATTGGTTATCAAGACACTTTGTATGTACACTCGAATCGACAGTTTTTTCGTGAGTGTGACATATATGGTACAGTGGACTTTATTTTTGGAAATGCGGTGGTGGTGTTCCAAAGCTGCAACATTTATGCTCGGAAGCCTATGCCCCAACAGAAGAACACCATCACTGCTCAAAACCGAAAGGATCCGAATCAGAATACTGGAATCTCCATCCATGCTTGCAAGATCCTCGCCACCACTGATCTTGAAGCCTCCAAAGGTTCTTTTCCGACTTTCCTTGGTCGCCCTTGGAAATTATACTCTAGAGTTGTTTACATGGTATCTTCAATGGGGGATCACATTCATCCACGTGGTTGGCTCGAGTGGCAAGGCTCTTTCGCTCTCGATACTCTTTACTACGGCGAGTATATGAATTCTGGGCCTGGTGCTGCCACAGGGCAGCGAGTCAACTGGCCAGGTTATCGGGTCATTACTTCTACGATTGAAGCCACCAAATTTACTGTCGGACAGTTTATCTATGGCTCTTCGTGGTTGCCTTCCACTGGAGTGTCGTTTTCGGCCGGATTATCTGCTAACTAA 1779 50.76 MNNYNKLHSSASGDTPATFQVSHTPNPPSSSASRRRTRILFVSLISILLITASAVSAAVLLHSQSSHFPHNKPTQAISHACSHTLYPSLCRSSLLSFPGSLSADVHRLVHISLNLTLQHLTKALYASSQIPVFQISNNPLAHSAYQDCIELLNDAVDAFSLSLFSTSASNHDIMTWLSAALTYHDTCSDGFADVDDPVKDQMAARLSDLSEMISNSLAIFSGYGEGLPVQNRRRLMESDREWAAENGVAVAEGEFPGWVSGKDRRLLAAPISAIQADIVVAKDGSGKFKTVAEAIEAAPSSSGRRIVIYIKAGKYEEENLKVGRKKTNLMFVGDGKGITVISGGKSVFDKVTTFRTATFAGSGTGIILRDMTFENTAGPSKHQAVALRVSADHAVVYRCNIIGYQDTLYVHSNRQFFRECDIYGTVDFIFGNAVVVFQSCNIYARKPMPQQKNTITAQNRKDPNQNTGISIHACKILATTDLEASKGSFPTFLGRPWKLYSRVVYMVSSMGDHIHPRGWLEWQGSFALDTLYYGEYMNSGPGAATGQRVNWPGYRVITSTIEATKFTVGQFIYGSSWLPSTGVSFSAGLSAN 592
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 6934865 6937943 + CmoCh02G011450.1 Cmo02g01145 376742
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo02g01145 592 SUPERFAMILY Pectin lyase-like 272 588 IPR011050 -
Cmo02g01145 592 CDD PMEI-like_3 80 223 - -
Cmo02g01145 592 Gene3D Invertase/pectin methylesterase inhibitor family protein 74 222 IPR035513 -
Cmo02g01145 592 TIGRFAM PME_inhib: pectinesterase inhibitor domain 55 221 IPR006501 GO:0004857
Cmo02g01145 592 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 75 221 IPR035513 -
Cmo02g01145 592 Pfam Pectinesterase 277 574 IPR000070 GO:0030599|GO:0042545
Cmo02g01145 592 Gene3D - 271 589 IPR012334 -
Cmo02g01145 592 Pfam Plant invertase/pectin methylesterase inhibitor 76 219 IPR006501 GO:0004857
Cmo02g01145 592 MobiDBLite consensus disorder prediction 1 32 - -
Cmo02g01145 592 PANTHER PECTINESTERASE 35 589 - -
Cmo02g01145 592 ProSitePatterns Pectinesterase signature 2. 422 431 IPR033131 -
Cmo02g01145 592 PANTHER PECTINESTERASE 35 589 - -
Cmo02g01145 592 SMART PMEI_2 72 219 IPR006501 GO:0004857
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo02g01145 Cmo18g01346 CCT
Cmo02g01145 Cmo16g00058 CCT
Cmo02g01145 Cmo15g01089 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo02g01145 Cmo-Chr2:6934865 Cmo17g01039 Cmo-Chr17:8822967 3.44E-173 dispersed
Cmo06g00166 Cmo-Chr6:887824 Cmo02g01145 Cmo-Chr2:6934865 7.67E-138 dispersed
Cmo07g00290 Cmo-Chr7:1415430 Cmo02g01145 Cmo-Chr2:6934865 4.30E-151 transposed
Cmo15g01089 Cmo-Chr15:7241794 Cmo02g01145 Cmo-Chr2:6934865 0 wgd
Cmo16g00058 Cmo-Chr16:242264 Cmo02g01145 Cmo-Chr2:6934865 0 wgd
Cmo18g01346 Cmo-Chr18:12739181 Cmo02g01145 Cmo-Chr2:6934865 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo02g01145 - - csv:101216816 944.88