Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo02g01162 ATGCACAAGCGAAGAACTCTAGCTCCGAAACCCACTACCAGTCAGGATTTTGCTTCAGATGACGACGAATACGACGACGTTTCATGTCAGAAGTGCGCCTCCGGCGACTCTCCGGCTGAGCTTCTTCTCTGCGACAAATGTGATAGAGGGTATCATCTCTTTTGTCTTTCCCCCATCCTCGCTTCAGTCCCCAAGGGATCCTGGTTTTGCCCGACTTGCTCCAACCACAAGAAGCTCAAATCTTTCCCTCTTGTTCAAACTAAAATTGTTGATTTTTTCCGCATCCAAAGACCTGCAGACTCCCAAACGGACTTGATGTTAGAGAATCGAAAGAAACGAAGACGGGCTGGTAGCTTAGTACTTTCTAGAAAGAGAAGGAAGCTCTTGCCATTTAATCCGATTGCAGATCCTGCAAGACGCCTGGAACAAATGGCATCACTGGCAACAGCATTGACGGCTACTGGTACAGATTACAGCAACGAGCTTACATATATGCGTGGCATGGCACCAAGGTCAGCAAACTGCGCATCTTTGGAGCACGGTGGAATGCAGGTTCTTCCTAAAGAGGACGTTGAAACCTTAAACTTGTGCAGAAGTATGATGGGGAGAGGGGAATGGCCTCCCCTTATGGTTGTTTTTGATCCTCGAGAAGGGTTTACTGTGGAGGCAGATAGGTTTATAAAGGACTTGACCATAATTACTGAATATACTGGGGATGTTGATTACCTGAGGAACCGTGAACATGATGAAGGGGATACGCTTGCGAATTTTCTTGAGGTTTCTGAATATCTGATAGTTCCATCAGTGAATTGTTTAGCTTGTACAATGGATGGTAGAAAAAAGCAAAACCTTAAATGCGTGAGGTTCAATGTAAATGGTGAATGTAGAGTTCTACTTATTGCTAACAGAGATATATCTAAGGGAGAGAGATTGTATTATGACTACAATGGATACGAACATGAATACCCCACCAAGCATTTTGTGTAA 987 44.38 MHKRRTLAPKPTTSQDFASDDDEYDDVSCQKCASGDSPAELLLCDKCDRGYHLFCLSPILASVPKGSWFCPTCSNHKKLKSFPLVQTKIVDFFRIQRPADSQTDLMLENRKKRRRAGSLVLSRKRRKLLPFNPIADPARRLEQMASLATALTATGTDYSNELTYMRGMAPRSANCASLEHGGMQVLPKEDVETLNLCRSMMGRGEWPPLMVVFDPREGFTVEADRFIKDLTIITEYTGDVDYLRNREHDEGDTLANFLEVSEYLIVPSVNCLACTMDGRKKQNLKCVRFNVNGECRVLLIANRDISKGERLYYDYNGYEHEYPTKHFV 328
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 7014565 7021336 - CmoCh02G011620.1 Cmo02g01162 376759

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo02g01162 328 ProSiteProfiles SET domain profile. 207 316 IPR001214 GO:0005515
Cmo02g01162 328 CDD PHD_RSF1 29 73 - -
Cmo02g01162 328 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE ATXR6 3 325 - -
Cmo02g01162 328 Pfam PHD-finger 29 75 IPR019787 -
Cmo02g01162 328 ProSitePatterns Zinc finger PHD-type signature. 29 73 IPR019786 -
Cmo02g01162 328 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 12 89 IPR013083 -
Cmo02g01162 328 PANTHER HISTONE ACETYLTRANSFERASE 3 325 - -
Cmo02g01162 328 MobiDBLite consensus disorder prediction 1 22 - -
Cmo02g01162 328 SMART PHD_3 28 74 IPR001965 -
Cmo02g01162 328 ProSiteProfiles Zinc finger PHD-type profile. 26 76 IPR019787 -
Cmo02g01162 328 SUPERFAMILY FYVE/PHD zinc finger 19 80 IPR011011 -
Cmo02g01162 328 SUPERFAMILY SET domain 199 316 IPR046341 -
Cmo02g01162 328 Gene3D SET domain 113 328 IPR046341 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo02g01162 K24406 ATXR5_6; [histone H3]-lysine27 N-methyltransferase [EC:2.1.1.369] - csv:101205046 551.592
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo02g01162 Cmo15g01080 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo02g01162 Cmo-Chr2:7014565 Cmo20g01075 Cmo-Chr20:9949118 1.98E-127 dispersed
Cmo15g01080 Cmo-Chr15:7154773 Cmo02g01162 Cmo-Chr2:7014565 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g1011 Blo06g01057 . . . . . . . . . . Cma15g01016 Car02g00937 Car15g00951 . Cpe05g00589 . . . . . . . . Cla01g00030 Cam01g0029 Cec01g0027 Cco01g0029 Clacu01g0029 Cmu01g0028 Cre09g2478 . . . . . . . . . . . Bda15g00790 . Bpe12g00344 Bma08g00393 . . Cmo02g01162 Cmo15g01080 . . . . . Cpe13g00321 Bhi12g00670 . . . Hepe06g0809 . . . . . . . . . Lsi09g00010 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001827 2 3 2 2 2 2 5 2 2 2 2 2 3 2 2 4 2 2 4 2 2 2 2 1 1 2 2 4 1 2 68
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
9282 PF00628 PHD 1.60E-11 CL0390 Cmo TR
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo02g01162 Cmo_Chr02 FPKM 47.432724 49.336899 72.583977 73.805542 41.745438 43.840481 45.751518 59.131863 55.850925 56.008865