Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo02g01182 ATGCAACATTCTGTTGGATTTCATGTTAGTTTAGGACCTATTATATTATGCTTGACTGGTTATGAGGAGTTGAGTTATCTGAAGAATATGGATTTCCAGCGCCCCTTTTCTTCTTCTTCTTCCTCCTCGGTTAATTTCTCCCTCTTTTTCTGCTCCTGCTCCTTCGTTTCTGATCACGCCTCCGCCTCCGACGACTGTGAAATGGCTGAGGCCGTGGTGGCGACTTCTGAGGGTGTGGATTTTGGTTATGCGACGGCCGAAATCGAGAACAATAGAGAAAACAGTTCAAATGGACTTGGGATTGGGATCAAGTGGGATTGCTTTTTGCCCAAGGTCATGCTCAGGGTCTTGCTTGTTGAAGCTGACGATTCCACCAGGCAGATTATCACTGCTCTTCTCCGCAAGTCCTGCTACCGAGTTGCTGCTGTTCCTGATGGCATGAAAGCGTGGGAGATTCTCAAAGCAAGGCCCCGTAATGTAGATCTTATATTGGCGGAAGTTGAATTACCATCAATGTCTGGATTTTCTCTGCTAACTCTGATCATGGGGCACGAGACTTGCAAAAATATTCCTGTTATAATGATGTCATCTGAAGATTCTATCAGCACCGTTTATAAATGCATGATGAAAGGTGCAGCAGACTATCTTGTTAAGCCCTTAAGGAGAAATGAACTGAGTCATCTGTGGCAACATGTTTGGAGAAGACAAGCATCATCCAATGCAAGAACTGACATTCAAGAAAAGGTTGAAGTCACTTCAGAAAATGAGACTGCAAGCAATCACTCCACTGATTATGTTGCTGGAGTTGAGAGGAATGACAACAACACTGAGAAAGGGAGTGATACTCAGAGCTCTTCTACAAAGGTAGATTTTGAGGCTGGTAGTAAGATGCAGGAAAGTTCACAGCCGAGGCAGGAAAAAGCCTCTTCAAATGACTTCAAGCTACAGAAAGATGGGGGTCACATCAATTTGAGTCAGAGATTGGCTATACATGAAAATGAATCTGGAGGATTGGCAATGAGTTGCTATGCCAATGATGATTTACCAATTACACTAAGCATGGGTCTTGAGCCGACCAATGATGGGAGAAGTCCTTATATTGCTAGTGAAGCAGAGGATTTGCTTGCCAACCCATCTAGAGATGCAACTGCGTTGAATCATGCCTGTATCAATTATCCCGATGACTACCAAAGAAGATCTCCTTCCACTGTTGCTGCCACAAACAATTTCGGCTCTGCTCTTCATTTGGATCTTTCCCTAAGAAGATGTCAACCTAATGATTTTGAGGACCGTGCTGCAGAAGGACGAGCTACCCTCAAACATTCCAGTGCTTCAGCTTTTACAAGATACACTTCCAGGCCATTGCAAACACTTCAAGCAAAATCAAGCAGTATCTGTGATGAACAAAAAGAATTTGGAAGCAATCCCGAGCATATTGGAAGTATTGCTGCTACTCCTACCTCTGATACCATTAATACTACGCTAAGTCTGCAAAACAGTAATACTTCTATGCCCCTGATGACAAGTCTATCTGCTCTCTCTGAAGTTGCAAAATCAAGTACTTCAGAGACAGAAATCCCTCATCAAGTTACAGTGAAAGATTTGATGTCTAATAGTCAATGCTCTGGCCATGGCTCTTTGCTTTCTCCCAACTTGTGCACACAAGGGGGTGCGTCATCGTCTCCATGCTCAACTTTAGTCACTCATCCCGAACCCATCTTGGCAAAACAGACAGTTTATCCCCTAAACCTTGAGAATCATAATTTGGAGCAGTTTCTGAACCAGCATCCCAACACAAGTGATTCAGGAAGCCGAAAGTTAGAGAACTCAGGGAAGAAGTTGGAGTATGCAGAAAATCAAGGCCATATATCACCTACCACTGATCACAGTGCAAACAGTAGTCTATGTGGTGGTAATACAAGTCATGTTCGAAGCGTGGGATATCCTAGCACATGCGGAAGCAACAACAATGTCGACCGGGTTGGCATTGCTGCAAGGGTTACATCTGAGACCAAAAATGAAGAAGCTTTGTCTTATCAAGGAGGAGATCCTCACCGGAGCAGTCAAAGAGAAGCAGCTCTAACAAAGTTCCGACTGAAGCGAAAAGATCGATGTTATGATAAAAAGGTGCGTTATGAGAGCAGGAAAAAGCTGGCAGAACAGCGTCCTAGAGTGAAGGGTCAGTTTGTCCGTAGAGTATACACTGATGATCCATTGCCTGCAGAAAGCAACGCCAATACATCCAACGGTTAG 2253 43.99 MQHSVGFHVSLGPIILCLTGYEELSYLKNMDFQRPFSSSSSSSVNFSLFFCSCSFVSDHASASDDCEMAEAVVATSEGVDFGYATAEIENNRENSSNGLGIGIKWDCFLPKVMLRVLLVEADDSTRQIITALLRKSCYRVAAVPDGMKAWEILKARPRNVDLILAEVELPSMSGFSLLTLIMGHETCKNIPVIMMSSEDSISTVYKCMMKGAADYLVKPLRRNELSHLWQHVWRRQASSNARTDIQEKVEVTSENETASNHSTDYVAGVERNDNNTEKGSDTQSSSTKVDFEAGSKMQESSQPRQEKASSNDFKLQKDGGHINLSQRLAIHENESGGLAMSCYANDDLPITLSMGLEPTNDGRSPYIASEAEDLLANPSRDATALNHACINYPDDYQRRSPSTVAATNNFGSALHLDLSLRRCQPNDFEDRAAEGRATLKHSSASAFTRYTSRPLQTLQAKSSSICDEQKEFGSNPEHIGSIAATPTSDTINTTLSLQNSNTSMPLMTSLSALSEVAKSSTSETEIPHQVTVKDLMSNSQCSGHGSLLSPNLCTQGGASSSPCSTLVTHPEPILAKQTVYPLNLENHNLEQFLNQHPNTSDSGSRKLENSGKKLEYAENQGHISPTTDHSANSSLCGGNTSHVRSVGYPSTCGSNNNVDRVGIAARVTSETKNEEALSYQGGDPHRSSQREAALTKFRLKRKDRCYDKKVRYESRKKLAEQRPRVKGQFVRRVYTDDPLPAESNANTSNG 750
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 7085038 7091096 + CmoCh02G011820.1 Cmo02g01182 376779

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo02g01182 750 MobiDBLite consensus disorder prediction 249 270 - -
Cmo02g01182 750 Pfam CCT motif 690 732 IPR010402 GO:0005515
Cmo02g01182 750 MobiDBLite consensus disorder prediction 249 319 - -
Cmo02g01182 750 CDD psREC_PRR 116 219 - -
Cmo02g01182 750 PANTHER TWO-COMPONENT RESPONSE REGULATOR 92 723 IPR045279 GO:0009736
Cmo02g01182 750 MobiDBLite consensus disorder prediction 278 309 - -
Cmo02g01182 750 ProSiteProfiles Response regulatory domain profile. 115 233 IPR001789 GO:0000160
Cmo02g01182 750 PANTHER TWO-COMPONENT RESPONSE REGULATOR-LIKE APRR5 92 723 - -
Cmo02g01182 750 Pfam Response regulator receiver domain 116 226 IPR001789 GO:0000160
Cmo02g01182 750 SUPERFAMILY CheY-like 113 249 IPR011006 -
Cmo02g01182 750 SMART REC_2 114 229 IPR001789 GO:0000160
Cmo02g01182 750 Coils Coil 745 750 - -
Cmo02g01182 750 Gene3D - 114 346 - -
Cmo02g01182 750 ProSiteProfiles CCT domain profile. 690 732 IPR010402 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo02g01182 K12130 PRR5; pseudo-response regulator 5 - csv:101209788 1023.46
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo02g01182 Cmo15g01055 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g00841 Cmo-Chr1:4482550 Cmo02g01182 Cmo-Chr2:7085038 2.51E-15 dispersed
Cmo02g01182 Cmo-Chr2:7085038 Cmo03g00476 Cmo-Chr3:5175369 2.24E-17 dispersed
Cmo14g02228 Cmo-Chr14:15799629 Cmo02g01182 Cmo-Chr2:7085038 1.28E-104 transposed
Cmo15g01055 Cmo-Chr15:6845235 Cmo02g01182 Cmo-Chr2:7085038 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g961 . . Bda05g00143 Bda07g01959 Bpe03g00223 . Bma10g01321 Bma14g02030 . . . Cma15g00995 Car02g00951 . . Cpe05g00576 . . . . . . . . Cla01g00007 Cam01g0007 Cec01g0006 Cco01g0008 Clacu01g0008 Cmu01g0008 Cre09g2497 Cone1ag1021 Cone5ag0728 . . . Csa05g00009 Chy09g01471 . Blo07g00314 . . . . . . . . Cmo02g01182 Cmo15g01055 . . . . . Cpe13g00339 Bhi12g00702 . . . Hepe06g0835 . . . . . . . . . . . . Cme09g02020
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007665 1 2 1 2 0 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 0 1 2 1 1 36
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
9284 PF00072 Response_reg 8.60E-21 CL0304 Cmo TR
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo02g01182 Cmo_Chr02 FPKM 0.0 0.51571 0.0 0.0 0.503986 0.0 0.0 0.0 0.0 0.0