Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo02g01223 ATGTTGATTTTAGCCTCAAACATGGTATGGTTTATCACTTTTTTCCCCTTGAACTTGAACTTGATCTTGAGCTCGATTTGGAGATTTGCATCGGATCTTGAGTTTCTGGAACGGTTTTTGTATCATTTTGCTATACATTTGAACCTGCATAAGCTTAAGGAGTGCTGCACACTTGTGGTTGTGTTTAAGGGAGGTTTAGAAGGATTTACAGCCATGAGAAGATCGGGTGTAAACCAACCAAAAGTGAAGCGTCTTGTTGGAAAATATGAAATCGGTCGAACGATTGGTGAGGGTACGTTTGCAAAAGTGAAAATAGCCAAAAATTCTGAAAATGGGGAACATGTAGCAATAAAGATCCTTGACAAGGAGAAAGTTCTGAAGCACAAGATGGCTGAACAGATCAAGCGGGAAATAGCGACAATGAAACTAATAAAGCATCCACATGTCGTCCAATTGTTCGAGGTTATGGGGAGCAAAACAAAGATATTCATTGTTTTGGAGTTCGTTACCGGAGGCGAACTTTTTGATAAAATTGTAAATCATGGACGGATGACCGAAAGTGAGGCACGGAGATATTTTCAGCAACTTATAAACGCGGTTGATTATTGTCATAGCAGAGGTGTTTACCATAGGGATCTTAAGCCTGAAAATCTATTGTTAGATGCCAAAGGAAATCTTAAAGTGTCTGATTTTGGATTGAGTGCACTGTCACAACAAGTTAAGGACGATGGCCTGCTTCACACTACTTGTGGAACTCCAAACTATGTTGCTCCTGAGGTCCTTAACGATAGAGGCTATGACGGAGCGACTGCAGACTTATGGTCATGTGGAGTCATACTCTTTGTACTGCTTGCAGGTTACTTGCCTTTTGATGATTCTAATATCATAAACCTTTATAAAAAGATCTCGGCCGCTGAATTTACTTGTCCTCCATGGCTTTCTTTAGATGCCATGAAATTGATCGCTCGAATTTTGGATCCGAACCCAATGACTCGCATCACCGTACCAGAAATTTTGGAAGATGAATGGTTTAAGAAAGATTATAAGCCCCCGGTTTTCGAGGAGCCTAAGATTGCAAACTTAGATGATGTAGAAGCAGTCTTCAAAGATTCGGAAGAGCACCATGTGACAGAGAAGAAGGAAGAACAACCTGTAGCCATGAACGCCTTCGAGTTAATTTCAATGTCGAAGGGGCTCAACCTGGAAAATTTGTTTGGTACAGAACAGGAATTCAAGAGAGAAACCAGGTTCACCTCTAAATGCTCAGCTAATGAAATTGTAAATAAGATTGAAGAAGCTGCCAAACCTCTTGGTTTTGATGTGCAGAAGAAAAATTACAAGATGAGACTCGAAAATGTGAAAGCGGGTCGGAAGGGAAACCTTAATGTTGCCACAGAGATTTTGCAAGTGGCACCTTCTGTTCATGTGGTTGAGATGCGAAAAGCTAAGGGGGACACCTTAGAGTTTCACAAGTTCTACAAAAACCTCTCCACCTCTCTAGAGGATGTTGTTTGGAAGACTGAGGAAGACATGCCAGCAAAAAAGTGA 1548 41.02 MLILASNMVWFITFFPLNLNLILSSIWRFASDLEFLERFLYHFAIHLNLHKLKECCTLVVVFKGGLEGFTAMRRSGVNQPKVKRLVGKYEIGRTIGEGTFAKVKIAKNSENGEHVAIKILDKEKVLKHKMAEQIKREIATMKLIKHPHVVQLFEVMGSKTKIFIVLEFVTGGELFDKIVNHGRMTESEARRYFQQLINAVDYCHSRGVYHRDLKPENLLLDAKGNLKVSDFGLSALSQQVKDDGLLHTTCGTPNYVAPEVLNDRGYDGATADLWSCGVILFVLLAGYLPFDDSNIINLYKKISAAEFTCPPWLSLDAMKLIARILDPNPMTRITVPEILEDEWFKKDYKPPVFEEPKIANLDDVEAVFKDSEEHHVTEKKEEQPVAMNAFELISMSKGLNLENLFGTEQEFKRETRFTSKCSANEIVNKIEEAAKPLGFDVQKKNYKMRLENVKAGRKGNLNVATEILQVAPSVHVVEMRKAKGDTLEFHKFYKNLSTSLEDVVWKTEEDMPAKK 515
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 7357307 7367140 - CmoCh02G012230.1 Cmo02g01223 376820
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo02g01223 515 Gene3D Phosphorylase Kinase; domain 1 78 168 - -
Cmo02g01223 515 ProSiteProfiles NAF domain profile. 382 406 IPR018451 GO:0007165
Cmo02g01223 515 Pfam NAF domain 384 443 IPR004041 GO:0007165
Cmo02g01223 515 PANTHER - 78 508 - -
Cmo02g01223 515 SUPERFAMILY Protein kinase-like (PK-like) 85 370 IPR011009 -
Cmo02g01223 515 SMART serkin_6 89 344 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo02g01223 515 PANTHER CBL-INTERACTING SERINE/THREONINE-PROTEIN KINASE 3 78 508 - -
Cmo02g01223 515 CDD STKc_SnRK3 88 343 - -
Cmo02g01223 515 Gene3D Transferase(Phosphotransferase) domain 1 169 351 - -
Cmo02g01223 515 CDD CIPK_C 388 502 - -
Cmo02g01223 515 ProSitePatterns Protein kinases ATP-binding region signature. 95 118 IPR017441 GO:0005524
Cmo02g01223 515 Gene3D Kinase associated domain 1, KA1 381 506 - -
Cmo02g01223 515 Pfam Protein kinase domain 89 344 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo02g01223 515 ProSiteProfiles Protein kinase domain profile. 89 344 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo02g01223 515 ProSitePatterns Serine/Threonine protein kinases active-site signature. 208 220 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo02g01223 Cmo-Chr2:7357307 Cmo06g01011 Cmo-Chr6:7945376 0 dispersed
Cmo14g01590 Cmo-Chr14:12623954 Cmo02g01223 Cmo-Chr2:7357307 5.76E-157 dispersed
Cmo17g00038 Cmo-Chr17:184901 Cmo02g01223 Cmo-Chr2:7357307 8.05E-91 dispersed
Cmo02g01223 Cmo-Chr2:7357307 Cmo13g00546 Cmo-Chr13:6316667 0 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
74132 PF00069 Pkinase 9.80E-73 CL0016 Cmo PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo02g01223 - - csv:101221173 859.751