Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmo02g01223 | ATGTTGATTTTAGCCTCAAACATGGTATGGTTTATCACTTTTTTCCCCTTGAACTTGAACTTGATCTTGAGCTCGATTTGGAGATTTGCATCGGATCTTGAGTTTCTGGAACGGTTTTTGTATCATTTTGCTATACATTTGAACCTGCATAAGCTTAAGGAGTGCTGCACACTTGTGGTTGTGTTTAAGGGAGGTTTAGAAGGATTTACAGCCATGAGAAGATCGGGTGTAAACCAACCAAAAGTGAAGCGTCTTGTTGGAAAATATGAAATCGGTCGAACGATTGGTGAGGGTACGTTTGCAAAAGTGAAAATAGCCAAAAATTCTGAAAATGGGGAACATGTAGCAATAAAGATCCTTGACAAGGAGAAAGTTCTGAAGCACAAGATGGCTGAACAGATCAAGCGGGAAATAGCGACAATGAAACTAATAAAGCATCCACATGTCGTCCAATTGTTCGAGGTTATGGGGAGCAAAACAAAGATATTCATTGTTTTGGAGTTCGTTACCGGAGGCGAACTTTTTGATAAAATTGTAAATCATGGACGGATGACCGAAAGTGAGGCACGGAGATATTTTCAGCAACTTATAAACGCGGTTGATTATTGTCATAGCAGAGGTGTTTACCATAGGGATCTTAAGCCTGAAAATCTATTGTTAGATGCCAAAGGAAATCTTAAAGTGTCTGATTTTGGATTGAGTGCACTGTCACAACAAGTTAAGGACGATGGCCTGCTTCACACTACTTGTGGAACTCCAAACTATGTTGCTCCTGAGGTCCTTAACGATAGAGGCTATGACGGAGCGACTGCAGACTTATGGTCATGTGGAGTCATACTCTTTGTACTGCTTGCAGGTTACTTGCCTTTTGATGATTCTAATATCATAAACCTTTATAAAAAGATCTCGGCCGCTGAATTTACTTGTCCTCCATGGCTTTCTTTAGATGCCATGAAATTGATCGCTCGAATTTTGGATCCGAACCCAATGACTCGCATCACCGTACCAGAAATTTTGGAAGATGAATGGTTTAAGAAAGATTATAAGCCCCCGGTTTTCGAGGAGCCTAAGATTGCAAACTTAGATGATGTAGAAGCAGTCTTCAAAGATTCGGAAGAGCACCATGTGACAGAGAAGAAGGAAGAACAACCTGTAGCCATGAACGCCTTCGAGTTAATTTCAATGTCGAAGGGGCTCAACCTGGAAAATTTGTTTGGTACAGAACAGGAATTCAAGAGAGAAACCAGGTTCACCTCTAAATGCTCAGCTAATGAAATTGTAAATAAGATTGAAGAAGCTGCCAAACCTCTTGGTTTTGATGTGCAGAAGAAAAATTACAAGATGAGACTCGAAAATGTGAAAGCGGGTCGGAAGGGAAACCTTAATGTTGCCACAGAGATTTTGCAAGTGGCACCTTCTGTTCATGTGGTTGAGATGCGAAAAGCTAAGGGGGACACCTTAGAGTTTCACAAGTTCTACAAAAACCTCTCCACCTCTCTAGAGGATGTTGTTTGGAAGACTGAGGAAGACATGCCAGCAAAAAAGTGA | 1548 | 41.02 | MLILASNMVWFITFFPLNLNLILSSIWRFASDLEFLERFLYHFAIHLNLHKLKECCTLVVVFKGGLEGFTAMRRSGVNQPKVKRLVGKYEIGRTIGEGTFAKVKIAKNSENGEHVAIKILDKEKVLKHKMAEQIKREIATMKLIKHPHVVQLFEVMGSKTKIFIVLEFVTGGELFDKIVNHGRMTESEARRYFQQLINAVDYCHSRGVYHRDLKPENLLLDAKGNLKVSDFGLSALSQQVKDDGLLHTTCGTPNYVAPEVLNDRGYDGATADLWSCGVILFVLLAGYLPFDDSNIINLYKKISAAEFTCPPWLSLDAMKLIARILDPNPMTRITVPEILEDEWFKKDYKPPVFEEPKIANLDDVEAVFKDSEEHHVTEKKEEQPVAMNAFELISMSKGLNLENLFGTEQEFKRETRFTSKCSANEIVNKIEEAAKPLGFDVQKKNYKMRLENVKAGRKGNLNVATEILQVAPSVHVVEMRKAKGDTLEFHKFYKNLSTSLEDVVWKTEEDMPAKK | 515 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
2 | 7357307 | 7367140 | - | CmoCh02G012230.1 | Cmo02g01223 | 376820 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmo02g01223 | 515 | Gene3D | Phosphorylase Kinase; domain 1 | 78 | 168 | - | - | |
Cmo02g01223 | 515 | ProSiteProfiles | NAF domain profile. | 382 | 406 | IPR018451 | GO:0007165 | |
Cmo02g01223 | 515 | Pfam | NAF domain | 384 | 443 | IPR004041 | GO:0007165 | |
Cmo02g01223 | 515 | PANTHER | - | 78 | 508 | - | - | |
Cmo02g01223 | 515 | SUPERFAMILY | Protein kinase-like (PK-like) | 85 | 370 | IPR011009 | - | |
Cmo02g01223 | 515 | SMART | serkin_6 | 89 | 344 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cmo02g01223 | 515 | PANTHER | CBL-INTERACTING SERINE/THREONINE-PROTEIN KINASE 3 | 78 | 508 | - | - | |
Cmo02g01223 | 515 | CDD | STKc_SnRK3 | 88 | 343 | - | - | |
Cmo02g01223 | 515 | Gene3D | Transferase(Phosphotransferase) domain 1 | 169 | 351 | - | - | |
Cmo02g01223 | 515 | CDD | CIPK_C | 388 | 502 | - | - | |
Cmo02g01223 | 515 | ProSitePatterns | Protein kinases ATP-binding region signature. | 95 | 118 | IPR017441 | GO:0005524 | |
Cmo02g01223 | 515 | Gene3D | Kinase associated domain 1, KA1 | 381 | 506 | - | - | |
Cmo02g01223 | 515 | Pfam | Protein kinase domain | 89 | 344 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cmo02g01223 | 515 | ProSiteProfiles | Protein kinase domain profile. | 89 | 344 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cmo02g01223 | 515 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 208 | 220 | IPR008271 | GO:0004672|GO:0006468 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmo02g01223 | Cmo-Chr2:7357307 | Cmo06g01011 | Cmo-Chr6:7945376 | 0 | dispersed | |
Cmo14g01590 | Cmo-Chr14:12623954 | Cmo02g01223 | Cmo-Chr2:7357307 | 5.76E-157 | dispersed | |
Cmo17g00038 | Cmo-Chr17:184901 | Cmo02g01223 | Cmo-Chr2:7357307 | 8.05E-91 | dispersed | |
Cmo02g01223 | Cmo-Chr2:7357307 | Cmo13g00546 | Cmo-Chr13:6316667 | 0 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
74132 | PF00069 | Pkinase | 9.80E-73 | CL0016 | Cmo | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmo02g01223 | - | - | csv:101221173 | 859.751 |