Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo02g01274 ATGGATCCGCCTCACCCATCCCCACCGGAGCTTCGTCTTCCTAGTCTCACTCCCCTCAAGATACTCGGACAAGGAGCCATGGGGACTGTCTTTCTCGTCCACGACCATCTCCTTGATCACGAGGCGAATTTCCCCTTTGCGCTCAAGGTCGTCCACAAATCGTCTTTTGTCTCTAAGCACCACGCCGAGCGCCGCGCTCGTTGGGAGATTCAGGTTCTTTCCCGGTTATCACTCCCTAAACCACACCCCTTTCTTCCTGACCTCATCGGATCCTTCGAGTCCGACGATTTTTTGGGCTGGGCTGTTCCGTACTGTCCTGGTGGGGACCTTAACGTCTTGCGTTACCGCCAAATGGACCGGGTCTTCTCGCCAGCTGTCATTCGGTTTTATTTGGCTGAGATCGTCTGTGCGCTAGAGCATCTTCATAGCATCGACATCGTTTACCGAGATTTGAAGCCGGAGAATGTATTGATTCAACAATCGGGTCATGTCACTCTAACCGATTTTGATTTGTCGCGTCAGTTGATTCGTAAGACAGTGAAAGACGTCGTTTCGCTTGATGATTCCGGCCACGAGAAGCTGCCGGCCGTCGCCGCCCGGCGGAACTTTACGCGATGGATTGTGGGGACCGCTAAAGTCAAAAAGGGTTTGAGAAAGGCTAAATCGGCTCGGGTTAGTCCTGTGAGCCGTTGGAAATCGGGTTTAATAACTAATAATGGCGAGCGGTCGAACTCCTTCGTTGGAACAGAGGAGTACGTTTCGCCGGAGATCATTCGAGGTGAGGGACATGAATTCGCCGTTGACTGGTGGGCCTTGGGAATTCTCACGTACGAGATGCTCTATGGGAAGACGCCGTTTAAGGGGACTAACCGTAAAGAAACGTTTAGGAACGTTCTAGTCAAAGCCCCAGAGCTAATCGGAAAGCGTTCAGATTTAACGGATTTGATCGAACGGTTGCTGGTGAAGGACCCCACCAAGCGGTTGGGGTACACCCGAGGCGCGTGTGAGATCAAAGAGCATGCGTTTTTTAACGGCGTTAAGTGGGACATATTAACGGAAGTCATGCGACCGCCATTTTTACCGGCTCGTGAAGAAACAGGATGGAGGGAGAATAAAGCCCCCGGTGGTGTGGGTATAGAGGAATACTTTCATAGACAGAGATCGCCGCCTTCATTTCCAGCGTCGCCGTCGCCGTCGTCATCTCCGTCAACCTCCTTCCATTTGCACAATAACAGCATATGTTTAGCGGAGTTCTAA 1257 51.79 MDPPHPSPPELRLPSLTPLKILGQGAMGTVFLVHDHLLDHEANFPFALKVVHKSSFVSKHHAERRARWEIQVLSRLSLPKPHPFLPDLIGSFESDDFLGWAVPYCPGGDLNVLRYRQMDRVFSPAVIRFYLAEIVCALEHLHSIDIVYRDLKPENVLIQQSGHVTLTDFDLSRQLIRKTVKDVVSLDDSGHEKLPAVAARRNFTRWIVGTAKVKKGLRKAKSARVSPVSRWKSGLITNNGERSNSFVGTEEYVSPEIIRGEGHEFAVDWWALGILTYEMLYGKTPFKGTNRKETFRNVLVKAPELIGKRSDLTDLIERLLVKDPTKRLGYTRGACEIKEHAFFNGVKWDILTEVMRPPFLPAREETGWRENKAPGGVGIEEYFHRQRSPPSFPASPSPSSSPSTSFHLHNNSICLAEF 418
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 7598999 7600255 - CmoCh02G012740.1 Cmo02g01274 376871
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo02g01274 418 Pfam Protein kinase domain 238 343 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo02g01274 418 Pfam Protein kinase domain 19 182 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo02g01274 418 ProSiteProfiles Protein kinase domain profile. 16 343 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo02g01274 418 SMART serkin_6 16 343 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo02g01274 418 Gene3D Transferase(Phosphotransferase) domain 1 109 179 - -
Cmo02g01274 418 MobiDBLite consensus disorder prediction 386 406 - -
Cmo02g01274 418 Gene3D Phosphorylase Kinase; domain 1 18 108 - -
Cmo02g01274 418 PANTHER SERINE/THREONINE-PROTEIN KINASE UCNL 11 390 - -
Cmo02g01274 418 ProSitePatterns Serine/Threonine protein kinases active-site signature. 146 158 IPR008271 GO:0004672|GO:0006468
Cmo02g01274 418 SUPERFAMILY Protein kinase-like (PK-like) 17 405 IPR011009 -
Cmo02g01274 418 ProSitePatterns Protein kinases ATP-binding region signature. 22 49 IPR017441 GO:0005524
Cmo02g01274 418 PANTHER FLIPPASE KINASE 1-RELATED 11 390 - -
Cmo02g01274 418 Gene3D Transferase(Phosphotransferase) domain 1 239 362 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo02g01274 Cmo-Chr2:7598999 Cmo08g00236 Cmo-Chr8:1423015 1.79E-85 dispersed
Cmo02g01274 Cmo-Chr2:7598999 Cmo03g01161 Cmo-Chr3:9165435 3.33E-73 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
74134 PF00069 Pkinase 1.60E-30 CL0016 Cmo PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo02g01274 - K08286 csv:101207338 632.869