Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo02g01275 ATGGGGTCCATGAATTCAAACAATTGCCTTTCCTTTCCACTTTCACCCACTAATCCTTCATTCTCCTTGCCCGAAATCCCATTTCAAGCCCCCAATGAGTGGAATCTGATAAGTACTGAAGGCGGTGGTGAAGCTCCAAAAGTTGCAGACTTTTTAGGCGTAAGCAAGGCAGAAAATGAGACACATCTCATGGGGTTTAATGAAATTCATACAGATTACTTGTTCCCAATCACACCATTTAATGTGGACTCCACCACTACCAATTCAAATAGTCTGCAATGTTTGAATCTTTCAATGGGGAGTGGGAAGGGCGAACCCACCCCCCCACCACTTAACAACACCGCTCTACATGTCACCCCCACAAGAACTTCGGACACTCTTGGGCACAGAACTTCAATCTATCGCGGTGTCACCAGGCATCGATGGACGGGAAGATATGAAGCACATTTGTGGGATAATAGTTGTAGGAGGGAAGGACATCTATTTGGAGGGTATGATAAAGAAGACAAAGCTGCTAGGGCTTATGATCTTGTTGCGTTGAAGTACTGGGGAACATCTACCACTACAAACTTTCCTATTAGTAACTATGAGAAGGAAGTGGAGGAAATGAAGCACATGACCAGACAAGAATTTGTGGCTGCCATTAGAAGGAAGAGTAGTGGGTTTTCAAGGGGTGCATCAATGTATCGTGGTGTTACAAGGCACCACCAGCATGGAAGATGGCAGGCCAGGATTGGACGAGTGGCTGGAAACAAAGATCTTTATTTGGGAACTTTCAGCACCGAAGAGGAAGCGGCGGAAGCATATGACATAGCCGCCATCAAATTCAGAGGGCTTAACGCAGTCACAAACTTCGACATGAGTCGTTATGACGTGAAGAGCATATTGGACAGCAATTCTGTCCCTATTGGCGGTGGTGCGGCCAAGCGCCTGAAAGAAGCCCAGGCCATGGAAGCCTCTCGAAAGCGTGAGGAAATGATGATTGCTCTTGCCTTTGCTTTTTCTCTTCAAAACCACCATGAAATTTCTCCCTACACCCACGATCCGGCGTCCTTTCACCACTCTACTTATTCCCACCATGATTCCCACTATGCTAACAACACTCATCCGTTTTACGGCGGCGGCGGCGGCGGAGACAGTAGTGGAGGGTACCTTGTAAGTGCGGTAGGGATGGGTTGTACGTTGGGGGATGAATACGCGCTGGTTAAGGTGGATTACGATATGCCTAATTCTGACGGTGGTGGTTATGGGAGCTGGTCGGAGGATTCGGTTCAGGGTTCCAACAATGGGGGGTTTTGA 1299 47.81 MGSMNSNNCLSFPLSPTNPSFSLPEIPFQAPNEWNLISTEGGGEAPKVADFLGVSKAENETHLMGFNEIHTDYLFPITPFNVDSTTTNSNSLQCLNLSMGSGKGEPTPPPLNNTALHVTPTRTSDTLGHRTSIYRGVTRHRWTGRYEAHLWDNSCRREGHLFGGYDKEDKAARAYDLVALKYWGTSTTTNFPISNYEKEVEEMKHMTRQEFVAAIRRKSSGFSRGASMYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTEEEAAEAYDIAAIKFRGLNAVTNFDMSRYDVKSILDSNSVPIGGGAAKRLKEAQAMEASRKREEMMIALAFAFSLQNHHEISPYTHDPASFHHSTYSHHDSHYANNTHPFYGGGGGGDSSGGYLVSAVGMGCTLGDEYALVKVDYDMPNSDGGGYGSWSEDSVQGSNNGGF 432
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 7603976 7606441 - CmoCh02G012750.1 Cmo02g01275 376872
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo02g01275 432 CDD AP2 132 194 IPR001471 GO:0003700|GO:0006355
Cmo02g01275 432 SMART rav1_2 133 198 IPR001471 GO:0003700|GO:0006355
Cmo02g01275 432 SMART rav1_2 228 292 IPR001471 GO:0003700|GO:0006355
Cmo02g01275 432 Gene3D AP2/ERF domain 133 194 IPR036955 GO:0003700|GO:0006355
Cmo02g01275 432 Gene3D AP2/ERF domain 228 288 IPR036955 GO:0003700|GO:0006355
Cmo02g01275 432 SUPERFAMILY DNA-binding domain 227 288 IPR016177 GO:0003677
Cmo02g01275 432 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 25 343 - -
Cmo02g01275 432 Pfam AP2 domain 133 184 IPR001471 GO:0003700|GO:0006355
Cmo02g01275 432 Pfam AP2 domain 229 278 IPR001471 GO:0003700|GO:0006355
Cmo02g01275 432 ProSiteProfiles AP2/ERF domain profile. 228 286 IPR001471 GO:0003700|GO:0006355
Cmo02g01275 432 CDD AP2 227 288 IPR001471 GO:0003700|GO:0006355
Cmo02g01275 432 PRINTS Ethylene responsive element binding protein signature 268 288 IPR001471 GO:0003700|GO:0006355
Cmo02g01275 432 PRINTS Ethylene responsive element binding protein signature 134 145 IPR001471 GO:0003700|GO:0006355
Cmo02g01275 432 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR PLT2 25 343 - -
Cmo02g01275 432 ProSiteProfiles AP2/ERF domain profile. 133 192 IPR001471 GO:0003700|GO:0006355
Cmo02g01275 432 SUPERFAMILY DNA-binding domain 132 194 IPR016177 GO:0003677
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo02g01275 Cmo20g00077 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo02g01275 Cmo-Chr2:7603976 Cmo05g00837 Cmo-Chr5:5236754 1.00E-118 dispersed
Cmo02g01275 Cmo-Chr2:7603976 Cmo20g00077 Cmo-Chr20:403519 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
9286 PF00847 AP2 3.70E-10 CL0081 Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo02g01275 K09285 - csv:101207097 565.074