Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmo02g01275 | ATGGGGTCCATGAATTCAAACAATTGCCTTTCCTTTCCACTTTCACCCACTAATCCTTCATTCTCCTTGCCCGAAATCCCATTTCAAGCCCCCAATGAGTGGAATCTGATAAGTACTGAAGGCGGTGGTGAAGCTCCAAAAGTTGCAGACTTTTTAGGCGTAAGCAAGGCAGAAAATGAGACACATCTCATGGGGTTTAATGAAATTCATACAGATTACTTGTTCCCAATCACACCATTTAATGTGGACTCCACCACTACCAATTCAAATAGTCTGCAATGTTTGAATCTTTCAATGGGGAGTGGGAAGGGCGAACCCACCCCCCCACCACTTAACAACACCGCTCTACATGTCACCCCCACAAGAACTTCGGACACTCTTGGGCACAGAACTTCAATCTATCGCGGTGTCACCAGGCATCGATGGACGGGAAGATATGAAGCACATTTGTGGGATAATAGTTGTAGGAGGGAAGGACATCTATTTGGAGGGTATGATAAAGAAGACAAAGCTGCTAGGGCTTATGATCTTGTTGCGTTGAAGTACTGGGGAACATCTACCACTACAAACTTTCCTATTAGTAACTATGAGAAGGAAGTGGAGGAAATGAAGCACATGACCAGACAAGAATTTGTGGCTGCCATTAGAAGGAAGAGTAGTGGGTTTTCAAGGGGTGCATCAATGTATCGTGGTGTTACAAGGCACCACCAGCATGGAAGATGGCAGGCCAGGATTGGACGAGTGGCTGGAAACAAAGATCTTTATTTGGGAACTTTCAGCACCGAAGAGGAAGCGGCGGAAGCATATGACATAGCCGCCATCAAATTCAGAGGGCTTAACGCAGTCACAAACTTCGACATGAGTCGTTATGACGTGAAGAGCATATTGGACAGCAATTCTGTCCCTATTGGCGGTGGTGCGGCCAAGCGCCTGAAAGAAGCCCAGGCCATGGAAGCCTCTCGAAAGCGTGAGGAAATGATGATTGCTCTTGCCTTTGCTTTTTCTCTTCAAAACCACCATGAAATTTCTCCCTACACCCACGATCCGGCGTCCTTTCACCACTCTACTTATTCCCACCATGATTCCCACTATGCTAACAACACTCATCCGTTTTACGGCGGCGGCGGCGGCGGAGACAGTAGTGGAGGGTACCTTGTAAGTGCGGTAGGGATGGGTTGTACGTTGGGGGATGAATACGCGCTGGTTAAGGTGGATTACGATATGCCTAATTCTGACGGTGGTGGTTATGGGAGCTGGTCGGAGGATTCGGTTCAGGGTTCCAACAATGGGGGGTTTTGA | 1299 | 47.81 | MGSMNSNNCLSFPLSPTNPSFSLPEIPFQAPNEWNLISTEGGGEAPKVADFLGVSKAENETHLMGFNEIHTDYLFPITPFNVDSTTTNSNSLQCLNLSMGSGKGEPTPPPLNNTALHVTPTRTSDTLGHRTSIYRGVTRHRWTGRYEAHLWDNSCRREGHLFGGYDKEDKAARAYDLVALKYWGTSTTTNFPISNYEKEVEEMKHMTRQEFVAAIRRKSSGFSRGASMYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTEEEAAEAYDIAAIKFRGLNAVTNFDMSRYDVKSILDSNSVPIGGGAAKRLKEAQAMEASRKREEMMIALAFAFSLQNHHEISPYTHDPASFHHSTYSHHDSHYANNTHPFYGGGGGGDSSGGYLVSAVGMGCTLGDEYALVKVDYDMPNSDGGGYGSWSEDSVQGSNNGGF | 432 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
2 | 7603976 | 7606441 | - | CmoCh02G012750.1 | Cmo02g01275 | 376872 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmo02g01275 | 432 | CDD | AP2 | 132 | 194 | IPR001471 | GO:0003700|GO:0006355 | |
Cmo02g01275 | 432 | SMART | rav1_2 | 133 | 198 | IPR001471 | GO:0003700|GO:0006355 | |
Cmo02g01275 | 432 | SMART | rav1_2 | 228 | 292 | IPR001471 | GO:0003700|GO:0006355 | |
Cmo02g01275 | 432 | Gene3D | AP2/ERF domain | 133 | 194 | IPR036955 | GO:0003700|GO:0006355 | |
Cmo02g01275 | 432 | Gene3D | AP2/ERF domain | 228 | 288 | IPR036955 | GO:0003700|GO:0006355 | |
Cmo02g01275 | 432 | SUPERFAMILY | DNA-binding domain | 227 | 288 | IPR016177 | GO:0003677 | |
Cmo02g01275 | 432 | PANTHER | AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR | 25 | 343 | - | - | |
Cmo02g01275 | 432 | Pfam | AP2 domain | 133 | 184 | IPR001471 | GO:0003700|GO:0006355 | |
Cmo02g01275 | 432 | Pfam | AP2 domain | 229 | 278 | IPR001471 | GO:0003700|GO:0006355 | |
Cmo02g01275 | 432 | ProSiteProfiles | AP2/ERF domain profile. | 228 | 286 | IPR001471 | GO:0003700|GO:0006355 | |
Cmo02g01275 | 432 | CDD | AP2 | 227 | 288 | IPR001471 | GO:0003700|GO:0006355 | |
Cmo02g01275 | 432 | PRINTS | Ethylene responsive element binding protein signature | 268 | 288 | IPR001471 | GO:0003700|GO:0006355 | |
Cmo02g01275 | 432 | PRINTS | Ethylene responsive element binding protein signature | 134 | 145 | IPR001471 | GO:0003700|GO:0006355 | |
Cmo02g01275 | 432 | PANTHER | AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR PLT2 | 25 | 343 | - | - | |
Cmo02g01275 | 432 | ProSiteProfiles | AP2/ERF domain profile. | 133 | 192 | IPR001471 | GO:0003700|GO:0006355 | |
Cmo02g01275 | 432 | SUPERFAMILY | DNA-binding domain | 132 | 194 | IPR016177 | GO:0003677 |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cmo02g01275 | Cmo20g00077 | CST |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmo02g01275 | Cmo-Chr2:7603976 | Cmo05g00837 | Cmo-Chr5:5236754 | 1.00E-118 | dispersed | |
Cmo02g01275 | Cmo-Chr2:7603976 | Cmo20g00077 | Cmo-Chr20:403519 | 0 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
9286 | PF00847 | AP2 | 3.70E-10 | CL0081 | Cmo | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmo02g01275 | K09285 | - | csv:101207097 | 565.074 |