Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmo02g01279 | ATGGCTGATCCCTACTCCATCAATGCCTCTTCTTTTGGTTTATACCATTACTTCTCTTCTTCTTCTTCCCCACCTTCTAATTCTAATCCTTTCTCTCCTTACGATCTCTTCTCGTTCTCTTACTCGAACGATGATAACGATAATAATAATAATACCCTAAAGAACCCGTCTTCCTCTCCTCGAGTTCTCCCGCTCTTAAGTTTAAGTCCCGTGAGACACGATCACCAAGATCACTCATTTTCTCTTAACAAAAACAAGAACTTGTGTAGCCCTTGTGAAGAAGACGATGACGAGACGGTTACTGTCGCTTTGCATTTAGGGCTTCCATCGGCTCCGTCTTCGTCTTCTTCCTCTGATCTGATTTTGAGGCTTTCTTCGACTGAGATCTCGGATAAATTAGAAGGTCAATTAGAAGAAGCGGTTCCCGTCGTCGTTCCTAATTATTACTCGGTCTCGTCATCGTCTTCTTCCTCCACAACTGGTGGTGGACTCAACAAGGGTCAGTATTGGATTCCCACTCCAGCTCAGATTCTCATTGGTCCAACCCAGTTTTCTTGCCCTCTTTGCTTCAAAACCTTCAACAGATACAACAACATGCAGATGCATATGTGGGGGCATGGATCACAATACAGAAAAGGGCCACAGTCACTAAGAGGAACACAGCCAACAGCCATGCTAAGGCTCCCATGTTATTGCTGTGCACCAGGGTGCAGAAACAACATAGACCATCCGAGGTCGAAGCCACTAAAAGACTTCCGAACCCTACAAACGCATTACAAACGAAAGCATGGAATCAAGCCATTTACTTGTAGGAAATGTGGGAAAGCGTTTGCTGTTAGAGGGGATTGGAGAACCCATGAGAAGAACTGTGGGAAGCTTTGGCATTGCACTTGTGGGTCTGATTTTAAGCACAAGAGGTCTTTGAAAGACCACATCAAAGCCTTTGGACATGGACATGCAGCTTATGGGATTGGCTCTTTTGACGAAGATGATGAGCCTGCTTCCGAGATCGAACACGATAACGACTTGTCTCACAGCAATGGAGATTGA | 1050 | 45.05 | MADPYSINASSFGLYHYFSSSSSPPSNSNPFSPYDLFSFSYSNDDNDNNNNTLKNPSSSPRVLPLLSLSPVRHDHQDHSFSLNKNKNLCSPCEEDDDETVTVALHLGLPSAPSSSSSSDLILRLSSTEISDKLEGQLEEAVPVVVPNYYSVSSSSSSSTTGGGLNKGQYWIPTPAQILIGPTQFSCPLCFKTFNRYNNMQMHMWGHGSQYRKGPQSLRGTQPTAMLRLPCYCCAPGCRNNIDHPRSKPLKDFRTLQTHYKRKHGIKPFTCRKCGKAFAVRGDWRTHEKNCGKLWHCTCGSDFKHKRSLKDHIKAFGHGHAAYGIGSFDEDDEPASEIEHDNDLSHSNGD | 349 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
2 | 7617958 | 7620468 | - | CmoCh02G012790.1 | Cmo02g01279 | 376876 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmo02g01279 | 349 | MobiDBLite | consensus disorder prediction | 330 | 349 | - | - | |
Cmo02g01279 | 349 | Gene3D | Classic Zinc Finger | 245 | 321 | - | - | |
Cmo02g01279 | 349 | PANTHER | TESTA 1 PROTEIN, PUTATIVE-RELATED | 1 | 342 | - | - | |
Cmo02g01279 | 349 | SUPERFAMILY | beta-beta-alpha zinc fingers | 249 | 288 | IPR036236 | - | |
Cmo02g01279 | 349 | PANTHER | ZINC FINGER PROTEIN WIP2 | 1 | 342 | IPR043584 | GO:0003700|GO:0010468 | |
Cmo02g01279 | 349 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 186 | 206 | IPR013087 | - | |
Cmo02g01279 | 349 | Gene3D | Classic Zinc Finger | 183 | 206 | - | - | |
Cmo02g01279 | 349 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 268 | 295 | IPR013087 | - | |
Cmo02g01279 | 349 | SMART | c2h2final6 | 268 | 288 | IPR013087 | - | |
Cmo02g01279 | 349 | SMART | c2h2final6 | 184 | 206 | IPR013087 | - | |
Cmo02g01279 | 349 | SMART | c2h2final6 | 294 | 317 | IPR013087 | - | |
Cmo02g01279 | 349 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 184 | 211 | IPR013087 | - |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cmo02g01279 | Cmo20g00081 | CST |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmo02g01279 | Cmo-Chr2:7617958 | Cmo06g00072 | Cmo-Chr6:444773 | 1.42E-129 | dispersed | |
Cmo17g00925 | Cmo-Chr17:8249266 | Cmo02g01279 | Cmo-Chr2:7617958 | 3.26E-114 | wgd | |
Cmo02g01279 | Cmo-Chr2:7617958 | Cmo20g00081 | Cmo-Chr20:418949 | 5.93E-164 | wgd | |
Cmo02g01279 | Cmo-Chr2:7617958 | Cmo08g00525 | Cmo-Chr8:3286506 | 2.33E-12 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
9287 | None | None | None | None | Cmo | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmo02g01279 | - | - | bhj:120089206 | 456.447 |