Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo02g01279 ATGGCTGATCCCTACTCCATCAATGCCTCTTCTTTTGGTTTATACCATTACTTCTCTTCTTCTTCTTCCCCACCTTCTAATTCTAATCCTTTCTCTCCTTACGATCTCTTCTCGTTCTCTTACTCGAACGATGATAACGATAATAATAATAATACCCTAAAGAACCCGTCTTCCTCTCCTCGAGTTCTCCCGCTCTTAAGTTTAAGTCCCGTGAGACACGATCACCAAGATCACTCATTTTCTCTTAACAAAAACAAGAACTTGTGTAGCCCTTGTGAAGAAGACGATGACGAGACGGTTACTGTCGCTTTGCATTTAGGGCTTCCATCGGCTCCGTCTTCGTCTTCTTCCTCTGATCTGATTTTGAGGCTTTCTTCGACTGAGATCTCGGATAAATTAGAAGGTCAATTAGAAGAAGCGGTTCCCGTCGTCGTTCCTAATTATTACTCGGTCTCGTCATCGTCTTCTTCCTCCACAACTGGTGGTGGACTCAACAAGGGTCAGTATTGGATTCCCACTCCAGCTCAGATTCTCATTGGTCCAACCCAGTTTTCTTGCCCTCTTTGCTTCAAAACCTTCAACAGATACAACAACATGCAGATGCATATGTGGGGGCATGGATCACAATACAGAAAAGGGCCACAGTCACTAAGAGGAACACAGCCAACAGCCATGCTAAGGCTCCCATGTTATTGCTGTGCACCAGGGTGCAGAAACAACATAGACCATCCGAGGTCGAAGCCACTAAAAGACTTCCGAACCCTACAAACGCATTACAAACGAAAGCATGGAATCAAGCCATTTACTTGTAGGAAATGTGGGAAAGCGTTTGCTGTTAGAGGGGATTGGAGAACCCATGAGAAGAACTGTGGGAAGCTTTGGCATTGCACTTGTGGGTCTGATTTTAAGCACAAGAGGTCTTTGAAAGACCACATCAAAGCCTTTGGACATGGACATGCAGCTTATGGGATTGGCTCTTTTGACGAAGATGATGAGCCTGCTTCCGAGATCGAACACGATAACGACTTGTCTCACAGCAATGGAGATTGA 1050 45.05 MADPYSINASSFGLYHYFSSSSSPPSNSNPFSPYDLFSFSYSNDDNDNNNNTLKNPSSSPRVLPLLSLSPVRHDHQDHSFSLNKNKNLCSPCEEDDDETVTVALHLGLPSAPSSSSSSDLILRLSSTEISDKLEGQLEEAVPVVVPNYYSVSSSSSSSTTGGGLNKGQYWIPTPAQILIGPTQFSCPLCFKTFNRYNNMQMHMWGHGSQYRKGPQSLRGTQPTAMLRLPCYCCAPGCRNNIDHPRSKPLKDFRTLQTHYKRKHGIKPFTCRKCGKAFAVRGDWRTHEKNCGKLWHCTCGSDFKHKRSLKDHIKAFGHGHAAYGIGSFDEDDEPASEIEHDNDLSHSNGD 349
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 7617958 7620468 - CmoCh02G012790.1 Cmo02g01279 376876
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo02g01279 349 MobiDBLite consensus disorder prediction 330 349 - -
Cmo02g01279 349 Gene3D Classic Zinc Finger 245 321 - -
Cmo02g01279 349 PANTHER TESTA 1 PROTEIN, PUTATIVE-RELATED 1 342 - -
Cmo02g01279 349 SUPERFAMILY beta-beta-alpha zinc fingers 249 288 IPR036236 -
Cmo02g01279 349 PANTHER ZINC FINGER PROTEIN WIP2 1 342 IPR043584 GO:0003700|GO:0010468
Cmo02g01279 349 ProSitePatterns Zinc finger C2H2 type domain signature. 186 206 IPR013087 -
Cmo02g01279 349 Gene3D Classic Zinc Finger 183 206 - -
Cmo02g01279 349 ProSiteProfiles Zinc finger C2H2 type domain profile. 268 295 IPR013087 -
Cmo02g01279 349 SMART c2h2final6 268 288 IPR013087 -
Cmo02g01279 349 SMART c2h2final6 184 206 IPR013087 -
Cmo02g01279 349 SMART c2h2final6 294 317 IPR013087 -
Cmo02g01279 349 ProSiteProfiles Zinc finger C2H2 type domain profile. 184 211 IPR013087 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo02g01279 Cmo20g00081 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo02g01279 Cmo-Chr2:7617958 Cmo06g00072 Cmo-Chr6:444773 1.42E-129 dispersed
Cmo17g00925 Cmo-Chr17:8249266 Cmo02g01279 Cmo-Chr2:7617958 3.26E-114 wgd
Cmo02g01279 Cmo-Chr2:7617958 Cmo20g00081 Cmo-Chr20:418949 5.93E-164 wgd
Cmo02g01279 Cmo-Chr2:7617958 Cmo08g00525 Cmo-Chr8:3286506 2.33E-12 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
9287 None None None None Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo02g01279 - - bhj:120089206 456.447