Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo02g01293 ATGCAGTCAAAGTCTAAAAGTGTGAATCAAGTGGAATCTGAACCACCGAATATGCAGCAGACTGGTAGTTATTCTGAACCTTGGTGGCGTAGTATTGGGTACAATCCTATCTCTCCGTCAGCAACAGGAGGGAATGTGTCCAATTCACCATCACTGGAATGTACTAATGGTGCCTCAGAATCTAATGACCAGTCAATGTCAAATGCTGATTTGAATGAAGATGATGATGATGACACCACGAAAGAAACGCAAGCTGCAAGTTATGGGCAAGGTCAGCACAACAATCAGCATGCTGTTTCTACTGCACCTAGAGTGCATGGTGGATGTATCACACAACCTCCTCAGCTTGAACTTGTAGGCCACTCTATTGCATGTGCATCAAACCAATATCAGGATCCTTATTATGCTGGACTTATGGCTGCATATGGGCATCAACCTATGGGTTATCCTCCTTTTATTGGGATGCCACATGCTAGAATGGCTTTGCCCCTTGAGGTGGCACAGGAGCCAGTTTTTGTGAATGCCAAACAGTATCAAGGGATTCTAAGGCGAAGACAAGCACGTGCTAAAGCAGAGGTTGAGAACAAACTGATAAAAGTTAGAAAGCCATATCTTCATGAATCTCGTCACCAGCATGCCATGAGACGGGCGAGGGGTACCGGTGGACGTTTTGCCAAGAAAAATGAAGCTAAATCTTTGAGCTCTACTATGAAGAGCAAGGAATCTGGTTCTGGTCAAGCTATATCGTCTAGTTCGTCTGGTTCTGAGGCTGTGCCTGGTGCCTTGGCTGAAACCTGGAATTCCTCCAATAGTCAACAAGAAGCAAGAGCCCAGTTGCATGAGTCATATGAAGCTCGTAGTTATGTGAATGGCAATAGCCATTTTCATAATTACAGTAGCTTCCAAGCTTCTTCATATGCTTTACTCTCTGGCGAGAGAGGTGAAGATGGAGACTGCTCGGGACAGCAACGAGGAAGTATCTCAGAAAATCAGGCCGCACAGAGGCGTCTTGCAATCAAATGA 1023 45.26 MQSKSKSVNQVESEPPNMQQTGSYSEPWWRSIGYNPISPSATGGNVSNSPSLECTNGASESNDQSMSNADLNEDDDDDTTKETQAASYGQGQHNNQHAVSTAPRVHGGCITQPPQLELVGHSIACASNQYQDPYYAGLMAAYGHQPMGYPPFIGMPHARMALPLEVAQEPVFVNAKQYQGILRRRQARAKAEVENKLIKVRKPYLHESRHQHAMRRARGTGGRFAKKNEAKSLSSTMKSKESGSGQAISSSSSGSEAVPGALAETWNSSNSQQEARAQLHESYEARSYVNGNSHFHNYSSFQASSYALLSGERGEDGDCSGQQRGSISENQAAQRRLAIK 340
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 7695004 7699072 + CmoCh02G012930.1 Cmo02g01293 376890
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo02g01293 340 ProSiteProfiles NF-YA/HAP2 family profile. 167 227 IPR001289 GO:0003700|GO:0006355
Cmo02g01293 340 MobiDBLite consensus disorder prediction 83 101 - -
Cmo02g01293 340 MobiDBLite consensus disorder prediction 1 106 - -
Cmo02g01293 340 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 31 331 IPR001289 GO:0003700|GO:0006355
Cmo02g01293 340 MobiDBLite consensus disorder prediction 1 28 - -
Cmo02g01293 340 MobiDBLite consensus disorder prediction 207 221 - -
Cmo02g01293 340 MobiDBLite consensus disorder prediction 35 68 - -
Cmo02g01293 340 MobiDBLite consensus disorder prediction 229 259 - -
Cmo02g01293 340 MobiDBLite consensus disorder prediction 311 340 - -
Cmo02g01293 340 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 169 224 IPR001289 GO:0003700|GO:0006355
Cmo02g01293 340 ProSitePatterns NF-YA/HAP2 subunit signature. 172 192 IPR018362 GO:0003677|GO:0016602
Cmo02g01293 340 PRINTS CCAAT-binding transcription factor subunit B signature 170 192 IPR001289 GO:0003700|GO:0006355
Cmo02g01293 340 PRINTS CCAAT-binding transcription factor subunit B signature 201 224 IPR001289 GO:0003700|GO:0006355
Cmo02g01293 340 Gene3D - 167 229 - -
Cmo02g01293 340 MobiDBLite consensus disorder prediction 207 259 - -
Cmo02g01293 340 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT A-9 31 331 - -
Cmo02g01293 340 SMART cbf3 166 227 IPR001289 GO:0003700|GO:0006355
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo02g01293 Cmo10g00972 CCT
Cmo02g01293 Cmo11g00859 CCT
Cmo02g01293 Cmo11g00859 ECH
Cmo02g01293 Cmo10g00972 ECH
Cmo02g01293 Cmo20g00092 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo02g01293 Cmo-Chr2:7695004 Cmo03g01443 Cmo-Chr3:10452672 5.34E-36 dispersed
Cmo10g00972 Cmo-Chr10:4904211 Cmo02g01293 Cmo-Chr2:7695004 8.92E-98 wgd
Cmo11g00859 Cmo-Chr11:4378215 Cmo02g01293 Cmo-Chr2:7695004 1.53E-101 wgd
Cmo17g00931 Cmo-Chr17:8289609 Cmo02g01293 Cmo-Chr2:7695004 1.02E-45 wgd
Cmo02g01293 Cmo-Chr2:7695004 Cmo20g00092 Cmo-Chr20:465885 0 wgd
Cmo02g01293 Cmo-Chr2:7695004 Cmo08g00517 Cmo-Chr8:3225088 1.63E-42 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
9289 PF02045 CBFB_NFYA 2.30E-26 No_clan Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo02g01293 K08064 - csv:101212961 545.043