Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo02g01315 ATGTGGTCCGCCGCCGCTGCTTCTCAGAGGTCTCTTAATTACGGCCTTGGATCAGAAATGAGCATGGTTGGCCTCCGAGATGTGTTTGTCGTTGCACCGGCTTCCTCTTTCAACCCTAATCCTCACCACCACGACAATAACCTCCTCTCAGATCCTCATTCCCTCGCTGTCTCTAACTCCGCCACCGCTCTCGGCGTCGGCGTTATTCCGTTGCTCACCGCCGGGCCATGCCTCGGCGTTGAGGAGGATAATCTATTGAGTAATCGGAGTAGTAACAGAGGCGGAGGGATTCAGTTATGGCAACAGAATCATTATTTGAAGAAAATGCCGTCGTCTCTGGATCATCACCTCCATAATCCCTCCGCCGCTAACAATGGACTTATCGACGACGGAATCGGTATTACCGGCGGTTTAGCTTCGTCGTCGTCGGCGACGACCACGTGTCAGGACTGTGGTAACCAAGCGAAGAAGGATTGTAGTCATAGACGCTGCAGAACTTGTTGTCGAAGCCGAGGGTTCGATTGCACTACTCACGTGAAGAGCACGTGGGTTCCTGCAGCGCGACGGCGAGAGCGGCAACTAATGGGGGTAACCGCTAACGCCGCTGCTGGTTCATCCGCCTCCACCTCCGGTGCGAAGAAACAGCGACTCATCGCCTCGCAAACCACTTCTCGGACTTCCACTTCCAATACGACGCCGCCGCGAAGCCTCGATACGAGCTCAAGCCACCAAGATGCTGGTTTTCCAGAGGCATTACCAGGACAAGTACGTGCACCGGCGGTTTTCAAGTGCGTGAGAGTCACGGCGGTGGACGACGGCGACGACGAATACGCTTATCAAGCGGTGGTTAAAATCGGCGGACATATCTTCAAAGGTTTTTTGTACGATCAAGGCGTTGAACCAGGAGATGAGTTTCCGAATGTTTCGGAATTGCATTTAGGCGACGGCGGTGGAATAACCAGAAACAATCGGAATGGCGTTTCTTCTTCTTCTCCGCTTGTTGATCCATCGGACGTTTACAATGCTGCCGCCACTGGCGGCGGCGGCGCTCCATGTTTTCTCGGCGGTTCAAATTACGGTAATCAAATCAGCTGA 1095 53.7 MWSAAAASQRSLNYGLGSEMSMVGLRDVFVVAPASSFNPNPHHHDNNLLSDPHSLAVSNSATALGVGVIPLLTAGPCLGVEEDNLLSNRSSNRGGGIQLWQQNHYLKKMPSSLDHHLHNPSAANNGLIDDGIGITGGLASSSSATTTCQDCGNQAKKDCSHRRCRTCCRSRGFDCTTHVKSTWVPAARRRERQLMGVTANAAAGSSASTSGAKKQRLIASQTTSRTSTSNTTPPRSLDTSSSHQDAGFPEALPGQVRAPAVFKCVRVTAVDDGDDEYAYQAVVKIGGHIFKGFLYDQGVEPGDEFPNVSELHLGDGGGITRNNRNGVSSSSPLVDPSDVYNAAATGGGGAPCFLGGSNYGNQIS 364
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 7811668 7813815 + CmoCh02G013150.1 Cmo02g01315 376912
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo02g01315 364 MobiDBLite consensus disorder prediction 199 246 - -
Cmo02g01315 364 TIGRFAM LRP1_Cterm: LRP1 C-terminal domain 252 299 IPR006511 -
Cmo02g01315 364 Pfam Domain of unknown function (DUF702) 145 300 - -
Cmo02g01315 364 PANTHER PROTEIN LATERAL ROOT PRIMORDIUM 1 22 363 - -
Cmo02g01315 364 PANTHER PROTEIN LATERAL ROOT PRIMORDIUM 1 22 363 IPR007818 GO:0003700|GO:0006355
Cmo02g01315 364 MobiDBLite consensus disorder prediction 198 252 - -
Cmo02g01315 364 TIGRFAM put_zinc_LRP1: putative zinc finger domain, LRP1 type 147 189 IPR006510 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo02g01315 Cmo11g00893 CCT
Cmo02g01315 Cmo20g00116 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo02g01315 Cmo-Chr2:7811668 Cmo04g01400 Cmo-Chr4:7135276 5.30E-71 dispersed
Cmo11g00893 Cmo-Chr11:4577275 Cmo02g01315 Cmo-Chr2:7811668 3.78E-67 wgd
Cmo02g01315 Cmo-Chr2:7811668 Cmo20g00116 Cmo-Chr20:589618 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
9292 PF05142 DUF702 7.50E-62 No_clan Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo02g01315 - - cpep:111777082 559.296