Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmo02g01315 | ATGTGGTCCGCCGCCGCTGCTTCTCAGAGGTCTCTTAATTACGGCCTTGGATCAGAAATGAGCATGGTTGGCCTCCGAGATGTGTTTGTCGTTGCACCGGCTTCCTCTTTCAACCCTAATCCTCACCACCACGACAATAACCTCCTCTCAGATCCTCATTCCCTCGCTGTCTCTAACTCCGCCACCGCTCTCGGCGTCGGCGTTATTCCGTTGCTCACCGCCGGGCCATGCCTCGGCGTTGAGGAGGATAATCTATTGAGTAATCGGAGTAGTAACAGAGGCGGAGGGATTCAGTTATGGCAACAGAATCATTATTTGAAGAAAATGCCGTCGTCTCTGGATCATCACCTCCATAATCCCTCCGCCGCTAACAATGGACTTATCGACGACGGAATCGGTATTACCGGCGGTTTAGCTTCGTCGTCGTCGGCGACGACCACGTGTCAGGACTGTGGTAACCAAGCGAAGAAGGATTGTAGTCATAGACGCTGCAGAACTTGTTGTCGAAGCCGAGGGTTCGATTGCACTACTCACGTGAAGAGCACGTGGGTTCCTGCAGCGCGACGGCGAGAGCGGCAACTAATGGGGGTAACCGCTAACGCCGCTGCTGGTTCATCCGCCTCCACCTCCGGTGCGAAGAAACAGCGACTCATCGCCTCGCAAACCACTTCTCGGACTTCCACTTCCAATACGACGCCGCCGCGAAGCCTCGATACGAGCTCAAGCCACCAAGATGCTGGTTTTCCAGAGGCATTACCAGGACAAGTACGTGCACCGGCGGTTTTCAAGTGCGTGAGAGTCACGGCGGTGGACGACGGCGACGACGAATACGCTTATCAAGCGGTGGTTAAAATCGGCGGACATATCTTCAAAGGTTTTTTGTACGATCAAGGCGTTGAACCAGGAGATGAGTTTCCGAATGTTTCGGAATTGCATTTAGGCGACGGCGGTGGAATAACCAGAAACAATCGGAATGGCGTTTCTTCTTCTTCTCCGCTTGTTGATCCATCGGACGTTTACAATGCTGCCGCCACTGGCGGCGGCGGCGCTCCATGTTTTCTCGGCGGTTCAAATTACGGTAATCAAATCAGCTGA | 1095 | 53.7 | MWSAAAASQRSLNYGLGSEMSMVGLRDVFVVAPASSFNPNPHHHDNNLLSDPHSLAVSNSATALGVGVIPLLTAGPCLGVEEDNLLSNRSSNRGGGIQLWQQNHYLKKMPSSLDHHLHNPSAANNGLIDDGIGITGGLASSSSATTTCQDCGNQAKKDCSHRRCRTCCRSRGFDCTTHVKSTWVPAARRRERQLMGVTANAAAGSSASTSGAKKQRLIASQTTSRTSTSNTTPPRSLDTSSSHQDAGFPEALPGQVRAPAVFKCVRVTAVDDGDDEYAYQAVVKIGGHIFKGFLYDQGVEPGDEFPNVSELHLGDGGGITRNNRNGVSSSSPLVDPSDVYNAAATGGGGAPCFLGGSNYGNQIS | 364 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
2 | 7811668 | 7813815 | + | CmoCh02G013150.1 | Cmo02g01315 | 376912 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmo02g01315 | 364 | MobiDBLite | consensus disorder prediction | 199 | 246 | - | - | |
Cmo02g01315 | 364 | TIGRFAM | LRP1_Cterm: LRP1 C-terminal domain | 252 | 299 | IPR006511 | - | |
Cmo02g01315 | 364 | Pfam | Domain of unknown function (DUF702) | 145 | 300 | - | - | |
Cmo02g01315 | 364 | PANTHER | PROTEIN LATERAL ROOT PRIMORDIUM 1 | 22 | 363 | - | - | |
Cmo02g01315 | 364 | PANTHER | PROTEIN LATERAL ROOT PRIMORDIUM 1 | 22 | 363 | IPR007818 | GO:0003700|GO:0006355 | |
Cmo02g01315 | 364 | MobiDBLite | consensus disorder prediction | 198 | 252 | - | - | |
Cmo02g01315 | 364 | TIGRFAM | put_zinc_LRP1: putative zinc finger domain, LRP1 type | 147 | 189 | IPR006510 | - |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cmo02g01315 | Cmo11g00893 | CCT | |
Cmo02g01315 | Cmo20g00116 | CST |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmo02g01315 | Cmo-Chr2:7811668 | Cmo04g01400 | Cmo-Chr4:7135276 | 5.30E-71 | dispersed | |
Cmo11g00893 | Cmo-Chr11:4577275 | Cmo02g01315 | Cmo-Chr2:7811668 | 3.78E-67 | wgd | |
Cmo02g01315 | Cmo-Chr2:7811668 | Cmo20g00116 | Cmo-Chr20:589618 | 0 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
9292 | PF05142 | DUF702 | 7.50E-62 | No_clan | Cmo | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmo02g01315 | - | - | cpep:111777082 | 559.296 |