Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmo02g01316 | ATGGCTTCCTCTGGAATCTCTACTGAAAGCGCTGAATTGTCTGATGCCGTTCAAATACTGGAAGTTTGCAACCAGATCGAAATGGGAAAGAAGGTAGAGATTCAAGGAACAGGTCATGGGAGTCATGATGGGGTTTGTGCAATATGCTTAAATAAGATAGCTCTCCAAGAAACTGCCTTAGTGAGGGGTTGCGAGCATGCCTATTGTGCGACTTGCATCCTTCGATGGGCCTCATATAATAAGAATCCGACATGTCCACAATGTAAACATCCATTTGAGTTCCTGATTGTGCATCGTTCTCTTGATGGGAGCGTCCATGACTTTATGTTTGAGGAGAGCGTATGCCTACTTCTGAGAGCTTCATGGTATATACCTCTGATCGTTGAAGATCGGGAAGAAACCTATGAAGATCCTGATGAGTACTACCCTTACGAGGATGATGACGAAGAGTTTGAGGAAGCTTACCTGGGTGCATCGTCGAGTCTCCGCATCGGCAATCGAAGGTGGGGAGACAATGGATATGTGAGGGGAGGTCGACAAGAAGCACGACCAGTTATTAGGTCAACTGTTCCAGTGCATGCAGGAGCTAGTTCATCACGTGAGCCTACAAAAAAAGATGCTTCCAAAGATAAAACCGGTCGACGAGCTAAAAGGGCCTTGAAACGGGAAGCTGCTGATAAAGCTGCAGCAGCTAAACATCAGGAACGTCTAGCTAGGTTTGGGCGGAAGTGA | 732 | 46.58 | MASSGISTESAELSDAVQILEVCNQIEMGKKVEIQGTGHGSHDGVCAICLNKIALQETALVRGCEHAYCATCILRWASYNKNPTCPQCKHPFEFLIVHRSLDGSVHDFMFEESVCLLLRASWYIPLIVEDREETYEDPDEYYPYEDDDEEFEEAYLGASSSLRIGNRRWGDNGYVRGGRQEARPVIRSTVPVHAGASSSREPTKKDASKDKTGRRAKRALKREAADKAAAAKHQERLARFGRK | 243 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
2 | 7819420 | 7822450 | + | CmoCh02G013160.1 | Cmo02g01316 | 376913 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmo02g01316 | 243 | ProSitePatterns | Zinc finger RING-type signature. | 64 | 73 | IPR017907 | - | |
Cmo02g01316 | 243 | PANTHER | RING/U-BOX SUPERFAMILY PROTEIN | 11 | 243 | - | - | |
Cmo02g01316 | 243 | ProSiteProfiles | Zinc finger RING-type profile. | 46 | 89 | IPR001841 | - | |
Cmo02g01316 | 243 | SUPERFAMILY | RING/U-box | 40 | 96 | - | - | |
Cmo02g01316 | 243 | SMART | ring_2 | 46 | 88 | IPR001841 | - | |
Cmo02g01316 | 243 | MobiDBLite | consensus disorder prediction | 189 | 243 | - | - | |
Cmo02g01316 | 243 | Pfam | Ring finger domain | 46 | 89 | IPR001841 | - | |
Cmo02g01316 | 243 | MobiDBLite | consensus disorder prediction | 199 | 243 | - | - | |
Cmo02g01316 | 243 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 22 | 94 | IPR013083 | - | |
Cmo02g01316 | 243 | PANTHER | RING/U-BOX SUPERFAMILY PROTEIN | 11 | 243 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmo02g01316 | Cmo-Chr2:7819420 | Cmo20g00119 | Cmo-Chr20:603255 | 6.77E-25 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmo02g01316 | - | - | mcha:111020607 | 376.711 |