Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo02g01316 ATGGCTTCCTCTGGAATCTCTACTGAAAGCGCTGAATTGTCTGATGCCGTTCAAATACTGGAAGTTTGCAACCAGATCGAAATGGGAAAGAAGGTAGAGATTCAAGGAACAGGTCATGGGAGTCATGATGGGGTTTGTGCAATATGCTTAAATAAGATAGCTCTCCAAGAAACTGCCTTAGTGAGGGGTTGCGAGCATGCCTATTGTGCGACTTGCATCCTTCGATGGGCCTCATATAATAAGAATCCGACATGTCCACAATGTAAACATCCATTTGAGTTCCTGATTGTGCATCGTTCTCTTGATGGGAGCGTCCATGACTTTATGTTTGAGGAGAGCGTATGCCTACTTCTGAGAGCTTCATGGTATATACCTCTGATCGTTGAAGATCGGGAAGAAACCTATGAAGATCCTGATGAGTACTACCCTTACGAGGATGATGACGAAGAGTTTGAGGAAGCTTACCTGGGTGCATCGTCGAGTCTCCGCATCGGCAATCGAAGGTGGGGAGACAATGGATATGTGAGGGGAGGTCGACAAGAAGCACGACCAGTTATTAGGTCAACTGTTCCAGTGCATGCAGGAGCTAGTTCATCACGTGAGCCTACAAAAAAAGATGCTTCCAAAGATAAAACCGGTCGACGAGCTAAAAGGGCCTTGAAACGGGAAGCTGCTGATAAAGCTGCAGCAGCTAAACATCAGGAACGTCTAGCTAGGTTTGGGCGGAAGTGA 732 46.58 MASSGISTESAELSDAVQILEVCNQIEMGKKVEIQGTGHGSHDGVCAICLNKIALQETALVRGCEHAYCATCILRWASYNKNPTCPQCKHPFEFLIVHRSLDGSVHDFMFEESVCLLLRASWYIPLIVEDREETYEDPDEYYPYEDDDEEFEEAYLGASSSLRIGNRRWGDNGYVRGGRQEARPVIRSTVPVHAGASSSREPTKKDASKDKTGRRAKRALKREAADKAAAAKHQERLARFGRK 243
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 7819420 7822450 + CmoCh02G013160.1 Cmo02g01316 376913
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo02g01316 243 ProSitePatterns Zinc finger RING-type signature. 64 73 IPR017907 -
Cmo02g01316 243 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 11 243 - -
Cmo02g01316 243 ProSiteProfiles Zinc finger RING-type profile. 46 89 IPR001841 -
Cmo02g01316 243 SUPERFAMILY RING/U-box 40 96 - -
Cmo02g01316 243 SMART ring_2 46 88 IPR001841 -
Cmo02g01316 243 MobiDBLite consensus disorder prediction 189 243 - -
Cmo02g01316 243 Pfam Ring finger domain 46 89 IPR001841 -
Cmo02g01316 243 MobiDBLite consensus disorder prediction 199 243 - -
Cmo02g01316 243 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 22 94 IPR013083 -
Cmo02g01316 243 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 11 243 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo02g01316 Cmo-Chr2:7819420 Cmo20g00119 Cmo-Chr20:603255 6.77E-25 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo02g01316 - - mcha:111020607 376.711