Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo02g01333 ATGATGGAAGGTGTGGCGCTGAAGCTCCAATTCAGAAATCCTACTCATTGCAGTTCCCTTTTCTCCTCCACAGTCCGCCATTCCTCTCCTTCTTTTCTCCGCTGCAGCTTCCGCAGATTTTCCTCTCCTTTCTCAGTTTCTGCCTCTGCTTCCACCGCTAGGGAAACCGACAACTTGCATCTCGGCTCACTTTCCCTTGGGCACATAACTCGACCTGATTTCCCTATCCTCCATCAGGAAGTAAATGGCTCCAAGCTTGTCTACTTGGACAACGCTGCCACCTCGCAGAAACCCCGTGCTGTGTTGAAAGCTTTGCAGAATTACTATGAGGCTTACAATTCAAATGTTCATCGTGGCATGCACTTCTTGAGTACGAAGGCAACTGACGAGTATGAATTGGCAAGAAAGAAGGTTGCGTCTTTTATCAATGCTAGAGATGCTAGTCAGATTGTTTTTACAAGGAATGCAACTGAAGCTATCAATCTAGTGGCTTATTCCTGGGGCATACCTAACTTAAAATTAGGAGATGAGGTCATAATTACAGTTGCTGAACATCACAGTGCTATTGTCCCCTGGCAAATTGTAGCTCAAAAGACTGGTGCTGTTCTGAAGTTTGTGAATTTAGGTGAACATGAAATTCCAAACTTGAAAGATTTCAAGGAGATGTTTTCAACAAAAACGAAGCTTGTGGTTACCCATCATGTCTCAAACGTACTAGCGTCTGTTCTTCCAATTGAAGAAATAGTTGGCTGGGCACATCGTTTTGGAGCAAAAGTGGTAGTAGATGCATGCCAGAGTGTTCCACATATGGTTGTTGACGTCCAGGTGCTTGATGCTGACTTTCTTGTTGCTTCTTCTCACAAGATGTGTGGGCCTACGAGCATTGGATTTTTATATGGAAAGAGTGAGCTCTTGTCTGCAATGCCTCCATTCTTAGGTGGTGGAGAGATGATATCAGATGTATTTCTTGACCATTCCTCATACGCAGAACCTCCTTCCAGATTTGAGGCTGGGACACCAGCAATTGGAGAGGCAATTGGGTTGGGAGCTGCTATTGATTATTTGTCTGGAATCGGCATGCAAAAGATTCATAGTTATGAAGTTGAATTGGCGAATTATCTGTATGAAAGCCTTCGTGCAGTGCCTAACATTCACATATATGGCCCAGCTCCCACAGGAAGTGTTCAACGAGCTGCGCTCTGTTCCTTCAATATTGAAAACATTCACCCAACCGACATTGCATCCTTTCTCGATCAACAGCACGGTGTAGCCATCCGATCAGGACACCACTGTGCACAGCCCCTCCACCGGGCACTCGGCGTGACCGCGAGTGCACGAGCTAGCCTTTACTTCTACAACACAAAAGAGGATGTGGACTACTTTATCCAGGCTCTAAATGATGCTTTCTTACTTGCTATCTCACAGAAAGGCATTGGCTCCGCTCGCAGCTTTAAAGAGGAAACGACACAATGCCACAGAGAGCAATTGATACGGAAACGCAGAGAAAAACTGAAAAATTCTCAAGAGGAAAAAAGCGAGAACGATCGTTCGAAGAGTGAAAGAAGAAGAAGAAGAAGAAGAAGAAGAGTGTATGTGATCGACGGAGTGGCGACGAGAAACGCTGAAGGAGAGACGCTCAACAGCCGTCTCCAACTCTTTCTTTTCTCTCTGTTCCCAAGTCTTGAAGGAATTTTCGGAAGTAAGGAAGAACTAATGGCGGCTCGAGCTGTTGCTCCGCAGCAACCACTACGAATCAGAGGTGAAGGTAAGCCGAAGATGGTAGAGGCTGAAGGAAGAACAAGGCGAGTTCTTCAAGATATAGGGAATCTGGTGCCTGATCGAGCCGTGGAAGGGAAACTCGGCCCTCAACCGGCCGAGAAGAACAAGAAAGCAATCACCCAAAAGCTGGGAGGGGGAGTAGGAAAGGGAGGCGATGTGGCGGCGAAGGCTACGGTAGTTGAGAAATGCAAAGCTGAGAAACCTAAGACTGTACTCAGCTCCGTCGACAGGCGACATATAATCAACATCAGCGATGGTAAATCAAGGGATAAGAATAAGAGGACTCTGACTTCAACTCTTAGTGCCAGAAGCAAGGCTGCCTGTGGGCTCAATAATCCACTGGATTCAGTAGCTAATATTGATGAAGCAGATGCTAACAACGAATTGGCAGTTGTTGAATACATCGATGATATGTACAAGTTCTACAAGCTTGCAGAAGATGAAAACATAGTGACAGATTACATGGGAACACAGCCAGATTTGAATGCCAAGATGAGGTCCATCCTCATAGATTGGTTGATTGAAGTTCATCGCAAGTTTGAACTAATGCCAGAAACCCTCTACCTCACAGTCAACATTGTAGACCGATTCCTATCCTTGAAGACTGTGCCAAGGAGAGAGCTTCAATTAGTTGGAGTCAGCTCTATGCTGATAGCATGCAAATATGAAGAGATTTGGGCCCCAGAGGTCAATGATTTTGTGAGTATATCTGCAAATACTTACCAGAGAGAACAGATTTTGGTGATGGAGAAAGTAATCTTGGGGAAGTTGGAATGGCTTCTAACAGTTCCTACACCCTATGTTTTTCTTGTTCGATACGTCAAGGCTTCTGAGCCGTCCGATGAGGAGATGGAGAACATGGTGTTTTTTCTAGCTGAGCTTGGTCTGATGAACTACCCCATAGCCATATCATACAGCCCATCAATGATTGCTTCAGCAGCTGTTTATGCTGCACGATGCACACTGGATAAGAGCCATCTCTGGACAACAACATTGCAGCATCATACAGGCTATGTTGAAGATGAGTTGAAGGAATGTGCAGAGCTCCTTGTGAACTTGCACCGTGGGGCTGCAGATAGCAAGCTGAAGGCTGTGTATAGGAAATATACGAGCCCAGATCGTAGTGCAGTTGCTCTGTTTCCTCCAGCTAGAAGAGATCATTTTGCTGTTAATGATCTCATCTTGTTGTTAGCTGCTAATATGGCTCTCTGTGTGTATTATTAG 3003 45.39 MMEGVALKLQFRNPTHCSSLFSSTVRHSSPSFLRCSFRRFSSPFSVSASASTARETDNLHLGSLSLGHITRPDFPILHQEVNGSKLVYLDNAATSQKPRAVLKALQNYYEAYNSNVHRGMHFLSTKATDEYELARKKVASFINARDASQIVFTRNATEAINLVAYSWGIPNLKLGDEVIITVAEHHSAIVPWQIVAQKTGAVLKFVNLGEHEIPNLKDFKEMFSTKTKLVVTHHVSNVLASVLPIEEIVGWAHRFGAKVVVDACQSVPHMVVDVQVLDADFLVASSHKMCGPTSIGFLYGKSELLSAMPPFLGGGEMISDVFLDHSSYAEPPSRFEAGTPAIGEAIGLGAAIDYLSGIGMQKIHSYEVELANYLYESLRAVPNIHIYGPAPTGSVQRAALCSFNIENIHPTDIASFLDQQHGVAIRSGHHCAQPLHRALGVTASARASLYFYNTKEDVDYFIQALNDAFLLAISQKGIGSARSFKEETTQCHREQLIRKRREKLKNSQEEKSENDRSKSERRRRRRRRRVYVIDGVATRNAEGETLNSRLQLFLFSLFPSLEGIFGSKEELMAARAVAPQQPLRIRGEGKPKMVEAEGRTRRVLQDIGNLVPDRAVEGKLGPQPAEKNKKAITQKLGGGVGKGGDVAAKATVVEKCKAEKPKTVLSSVDRRHIINISDGKSRDKNKRTLTSTLSARSKAACGLNNPLDSVANIDEADANNELAVVEYIDDMYKFYKLAEDENIVTDYMGTQPDLNAKMRSILIDWLIEVHRKFELMPETLYLTVNIVDRFLSLKTVPRRELQLVGVSSMLIACKYEEIWAPEVNDFVSISANTYQREQILVMEKVILGKLEWLLTVPTPYVFLVRYVKASEPSDEEMENMVFFLAELGLMNYPIAISYSPSMIASAAVYAARCTLDKSHLWTTTLQHHTGYVEDELKECAELLVNLHRGAADSKLKAVYRKYTSPDRSAVALFPPARRDHFAVNDLILLLAANMALCVYY 1000
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 7911851 7919870 - CmoCh02G013330.1 Cmo02g01333 376930
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo02g01333 1000 MobiDBLite consensus disorder prediction 489 519 - -
Cmo02g01333 1000 CDD CYCLIN 855 944 IPR013763 -
Cmo02g01333 1000 MobiDBLite consensus disorder prediction 489 524 - -
Cmo02g01333 1000 ProSitePatterns Cyclins signature. 759 790 IPR006671 -
Cmo02g01333 1000 Gene3D - 730 971 - -
Cmo02g01333 1000 Pfam Cyclin, C-terminal domain 857 975 IPR004367 -
Cmo02g01333 1000 CDD CYCLIN 758 847 IPR013763 -
Cmo02g01333 1000 Gene3D Aspartate Aminotransferase, domain 1 71 465 IPR015422 GO:0003824
Cmo02g01333 1000 PANTHER CYCLIN-B1-4 593 978 - -
Cmo02g01333 1000 PANTHER CYCLINS 593 978 IPR039361 -
Cmo02g01333 1000 CDD SufS_like 87 465 IPR010970 GO:0006534|GO:0030170|GO:0031071
Cmo02g01333 1000 Coils Coil 493 513 - -
Cmo02g01333 1000 Gene3D - 98 358 IPR015421 GO:0003824
Cmo02g01333 1000 Pfam Aminotransferase class-V 87 461 IPR000192 -
Cmo02g01333 1000 SMART Cyclin_C_2 857 976 IPR004367 -
Cmo02g01333 1000 Gene3D - 744 855 - -
Cmo02g01333 1000 Pfam Cyclin, N-terminal domain 730 854 IPR006671 -
Cmo02g01333 1000 SUPERFAMILY Cyclin-like 719 852 IPR036915 -
Cmo02g01333 1000 SUPERFAMILY Cyclin-like 858 976 IPR036915 -
Cmo02g01333 1000 SUPERFAMILY PLP-dependent transferases 70 468 IPR015424 -
Cmo02g01333 1000 TIGRFAM sufS: cysteine desulfurase, SufS family 71 467 IPR010970 GO:0006534|GO:0030170|GO:0031071
Cmo02g01333 1000 SMART cyclin_7 861 945 IPR013763 -
Cmo02g01333 1000 SMART cyclin_7 764 848 IPR013763 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo02g01333 Cmo-Chr2:7911851 Cmo07g01148 Cmo-Chr7:6157067 5.96E-135 dispersed
Cmo03g01077 Cmo-Chr3:8058099 Cmo02g01333 Cmo-Chr2:7911851 7.78E-06 dispersed
Cmo07g00622 Cmo-Chr7:2802502 Cmo02g01333 Cmo-Chr2:7911851 8.58E-21 dispersed
Cmo19g01144 Cmo-Chr19:9635668 Cmo02g01333 Cmo-Chr2:7911851 1.80E-75 transposed
Cmo02g01333 Cmo-Chr2:7911851 Cmo20g00150 Cmo-Chr20:728746 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo02g01333 K11717 - csv:101222630 779.63