Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo02g01336 ATGGCGGATATTAGAAAATGGTTCATGAAAGCGCACGATAAAGACAATGGCAGTGCGTCAAAGCATGCAAAACCTGATTCAAGCAGTAATGAGAAATCCGCCGCAGCTGAACTACAGTCCGGAAAAGCAGAGCTAAGTGGTGGAGGAAGTACTGGCAGAAGGATAACTAGCAAGTATTTTGCCTCAGAAAAGCAGAAGTCTAAGGATACAACAGAAACAGAGGAACTCCCGATCAAACGAAAGTCTCCACAGGATGCTAAGGAGTCACCAGCCAAAAGAAAGTCCCAAAAGGATAGTAAGGAATCATTGAAAGTTCCACCCCTACAAAAATTAAACAAAATTGATGACAATGATGATGATGATGCTGTTATTTCAAGTTCTAGAAAGAACTTGTCTGATGTCACTCCCAATAAAAAGTTGAAGAGTGGTTCTGGAAAGGGAATTACACAGAAACCGGTAAAAATTGAAGAGAGTGATGATGAGGAAGCTGAGGGCACTGAGTCTTCTCGGAAGCAGCCTAGTGGAAGGGGTAGGGGGGGAAGAGGTTCATCTGCTGCAACCGTTGGTGGTAGAGGCAGAGGTGGTGGGCGGGGTGGATTTATGAATTTTGGGGAAAGGAAAGATCCTCCACACAAAGGAGAAAAGGAAGTCCCAGAAGGAGCTCCTGACTGTTTAGCCGGTTTAACTTTTGTAATCAGTGGAACCCTTGACAGTTTGGAACGAGAAGAAGCAGAAGATTTGATTAAACGCCATGGTGGTAGAATAACTGGATCCATCAGCAAAAAAACAAATTATCTACTATGTGATGAAGATATTGGTGGCCGAAAATCTTCCAAAGCGAAAGAGCTGGGAACTGCTTTTCTCACTGAGGATGGCTTATTTGACATTATCCGTGCATCAGGCACAAAAGCTCCTCCAAGGCAAGATTCTAAAAAATCTGTGGTTAAGTCCGTGGAATCTCCAACTGGGAAAAGTTCCCTGAAAGTACAAGCAAAGACGTGCAAAGATTTGTCTGCTGGTGCTTCACCTGCTAAGCAAAAACGCCGAACAGTTGAATTTTCTTCCCTAACATGGACAGAAAAATATAAGCCAAAGGTTCCAAATGACATTATAGGGAATCAGTCGCTGGTCAAACAACTTCATGATTGGTTGGCACATTGGAACGAGAACTTCCTTGATGGTGGAAGCAAAAAGAAGGGTAAAAAGCTCAATGATTCTGGTGCCAAAAAAGCAATCTTGTTATGTGGAGGTCCAGGCATAGGTAAAACTACATCGGCTAAGTTGGTCAGCCAGATGCTTGGTTACGAGGCTATAGAGGTAAATGCCAGTGACAATCGGGGTAAATCAGACGCAAAAATTCAGAAGGGAATCAGTGGAAGCAATGCAAATACTATAAAGGAGCTTATCAGCAATTCATCTTTGCATTTCAGAACGGATCAGCCAAAACGTCCCAAAACTGTGTTGATTATGGATGAAGTAGATGGAATGTCTGCTGGAGATAGGGGTGGAGTCGCTGATCTTATTGCAAGCATTAAAAGCTCCAAAATTCCAATTATCTGCATCTGTAATGACCGCTACAGCCAGAAGTTGAAAAGCCTTGTGAACTATTGTCTGATTCTCAGTTTTAGAAAACCTACAAAACAACAGATGGCAAAAAGATTGAGTCAAGTTGCAAATGCAGAAGGACTTCAAGTTAATGAGATTGCTCTTGAGGAACTTGCAGAAAGAGTGAATGGGGATATACGTATGGCACTAAATCAGTTGCAGTACCTGAGTCTGTCGATGTCTGTTATTAAATATGATGATATTCGCCAACGACTTCTGGGCAGTATGAAAGATGAAGACATCTCGCCGTTCACTGCTGTTGATAAGCTGTTTGGTTTTAATTCTGGGAAGTTAAGGATGGATGAACGGATAGACCTCAGTATGAGTGATATGGATCTAGTCCCTCTTCTTATTCAGGAAAATTATATTAATTATAGACCAAGCTCTGTTAGTAAGGATGACAATGGGATCAAACGGATGGATTTGATGGCCCGTGCAGCTGAATCTATTGCAGATGGGGATATAATCAATGTACAGATTCGAAGGCATCGACAGTGGCAACTCTCTCAAAGTAGCTCAATTGCTTCTTGTGTAATCCCAGCTTCATTATTGCATGGGCAAAGAGAAACGCTTGAGCAGGGAGAGCGTAATTTTAATAGATTTAGTGCATGGCTGGGAAAAAATTCTACTTTTGGAAAAAATATGCGGCTTTTGGAGGATTTGCATGTTCACATTCTTGCTTCTCGCGAGTCCTGTTCTAGGAGGGAACACCTACGGGTTGAGAACCTTACCCTATTTCTGAAGAGGTTGACTGAACCACTGCATACGCTGCCTAAGGATGAAGCTGTTAAAATGGTTGTAGATTTTATGAGTCTATATTCGATCAATCAAGAGGATTTTGATACTGTTATGGAGTTGTCAAAATTTCAGGGTCGTAAGAATCCATTGGATGGCGTGGCCCCTGCTGTCAAAGCTGCTCTAACAAAGGCATATAAAGAAGCAAGAAAGACACAGATGGTGCGGACTGCAGACCTCATTACACTTCCTGGAATTAAAAAGGCCCCTAAGAAGCGAATTGCAGCAATGCTAGAACCAGCTGAGGATACAGTCGAGGGCAATGGTGGAGACACGTTGGCAGAAAGTGACGATGAGAACTCTTTGGACAACGACGACGCAGAAGATTCAACAAACGCTGAGAAGAAGCTGCAACTGGAACTTCAAAACTTGAAGAAGGAAGGAATGGAAGTGCAGCTAGATTTGAAAGGTGTGGAAAATTCAAACGCCAAGAAACCTGGTGGCAGAGGAAGAGGAGGTGGTTCCCAGGCTTCAGAGAAGAAAGGTGGGGGTCGAGGTTCAGGATCTGCCACAAAGAGGAAAAGATGA 2928 42.9 MADIRKWFMKAHDKDNGSASKHAKPDSSSNEKSAAAELQSGKAELSGGGSTGRRITSKYFASEKQKSKDTTETEELPIKRKSPQDAKESPAKRKSQKDSKESLKVPPLQKLNKIDDNDDDDAVISSSRKNLSDVTPNKKLKSGSGKGITQKPVKIEESDDEEAEGTESSRKQPSGRGRGGRGSSAATVGGRGRGGGRGGFMNFGERKDPPHKGEKEVPEGAPDCLAGLTFVISGTLDSLEREEAEDLIKRHGGRITGSISKKTNYLLCDEDIGGRKSSKAKELGTAFLTEDGLFDIIRASGTKAPPRQDSKKSVVKSVESPTGKSSLKVQAKTCKDLSAGASPAKQKRRTVEFSSLTWTEKYKPKVPNDIIGNQSLVKQLHDWLAHWNENFLDGGSKKKGKKLNDSGAKKAILLCGGPGIGKTTSAKLVSQMLGYEAIEVNASDNRGKSDAKIQKGISGSNANTIKELISNSSLHFRTDQPKRPKTVLIMDEVDGMSAGDRGGVADLIASIKSSKIPIICICNDRYSQKLKSLVNYCLILSFRKPTKQQMAKRLSQVANAEGLQVNEIALEELAERVNGDIRMALNQLQYLSLSMSVIKYDDIRQRLLGSMKDEDISPFTAVDKLFGFNSGKLRMDERIDLSMSDMDLVPLLIQENYINYRPSSVSKDDNGIKRMDLMARAAESIADGDIINVQIRRHRQWQLSQSSSIASCVIPASLLHGQRETLEQGERNFNRFSAWLGKNSTFGKNMRLLEDLHVHILASRESCSRREHLRVENLTLFLKRLTEPLHTLPKDEAVKMVVDFMSLYSINQEDFDTVMELSKFQGRKNPLDGVAPAVKAALTKAYKEARKTQMVRTADLITLPGIKKAPKKRIAAMLEPAEDTVEGNGGDTLAESDDENSLDNDDAEDSTNAEKKLQLELQNLKKEGMEVQLDLKGVENSNAKKPGGRGRGGGSQASEKKGGGRGSGSATKRKR 975
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 7944644 7960197 - CmoCh02G013360.1 Cmo02g01336 376933
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo02g01336 975 CDD AAA 405 545 - -
Cmo02g01336 975 MobiDBLite consensus disorder prediction 204 219 - -
Cmo02g01336 975 MobiDBLite consensus disorder prediction 152 171 - -
Cmo02g01336 975 Gene3D - 356 544 IPR027417 -
Cmo02g01336 975 CDD BRCT_RFC1 220 298 - -
Cmo02g01336 975 MobiDBLite consensus disorder prediction 1 28 - -
Cmo02g01336 975 MobiDBLite consensus disorder prediction 878 918 - -
Cmo02g01336 975 Gene3D - 545 615 - -
Cmo02g01336 975 CDD HLD_clamp_RFC 545 603 - -
Cmo02g01336 975 PANTHER REPLICATION FACTOR C SUBUNIT 1 18 945 - -
Cmo02g01336 975 PANTHER CHROMOSOME TRANSMISSION FIDELITY FACTOR 18 18 945 - -
Cmo02g01336 975 SUPERFAMILY post-AAA+ oligomerization domain-like 616 761 IPR008921 GO:0003677|GO:0006260
Cmo02g01336 975 Pfam BRCA1 C Terminus (BRCT) domain 222 297 IPR001357 -
Cmo02g01336 975 Coils Coil 907 941 - -
Cmo02g01336 975 MobiDBLite consensus disorder prediction 932 975 - -
Cmo02g01336 975 MobiDBLite consensus disorder prediction 111 126 - -
Cmo02g01336 975 ProSiteProfiles BRCT domain profile. 220 298 IPR001357 -
Cmo02g01336 975 MobiDBLite consensus disorder prediction 59 104 - -
Cmo02g01336 975 Pfam ATPase family associated with various cellular activities (AAA) 412 524 IPR003959 GO:0005524|GO:0016887
Cmo02g01336 975 SUPERFAMILY BRCT domain 220 299 IPR036420 -
Cmo02g01336 975 MobiDBLite consensus disorder prediction 301 322 - -
Cmo02g01336 975 SMART BRCT_7 222 300 IPR001357 -
Cmo02g01336 975 Gene3D - 617 727 - -
Cmo02g01336 975 MobiDBLite consensus disorder prediction 44 58 - -
Cmo02g01336 975 SMART AAA_5 408 546 IPR003593 -
Cmo02g01336 975 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 356 605 IPR027417 -
Cmo02g01336 975 PIRSF RFC1 1 946 IPR012178 GO:0003689|GO:0005524|GO:0005663|GO:0006260|GO:0006281
Cmo02g01336 975 MobiDBLite consensus disorder prediction 892 907 - -
Cmo02g01336 975 Pfam Replication factor RFC1 C terminal domain 685 847 IPR013725 GO:0003689|GO:0005524|GO:0005663|GO:0006260
Cmo02g01336 975 Gene3D BRCT domain 197 299 IPR036420 -
Cmo02g01336 975 MobiDBLite consensus disorder prediction 127 144 - -
Cmo02g01336 975 MobiDBLite consensus disorder prediction 1 221 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo02g01336 Cmo-Chr2:7944644 Cmo16g01059 Cmo-Chr16:7436229 9.22E-14 dispersed
Cmo01g01444 Cmo-Chr1:11266097 Cmo02g01336 Cmo-Chr2:7944644 5.21E-10 transposed
Cmo06g01267 Cmo-Chr6:9554205 Cmo02g01336 Cmo-Chr2:7944644 1.21E-24 transposed
Cmo02g01336 Cmo-Chr2:7944644 Cmo20g00154 Cmo-Chr20:758015 2.24E-06 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo02g01336 K10754 - csv:101204361 1506.12