Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo02g01337 ATGTCACTGGACATGATGGCATCAGAACGTGTTTGTTATGTTCACTGCAACTTCTGCAACACCATTTTAGCGGTAAGTGTTCCATGCAACAGCATGTTCACACTCGTAACTGTTAGATGTGGCCATTGCACAAATCTACTCTCCGTAAACATGGGAGCTTCCCTTCAAGTACTTCCTCCACAAGAGGATCACAAGCAGCCGCAACTAACGAGCCCGGAGGATTCAAGCAAGGACAGAGGCTCATCATCTTCAAAATGCAGCAAAATTGGGTCACTTGAATCTGGTGAACGTGACCAACATAGAATCCCTCCAATTCGCCCACCGGAGAAAAGACAGCGAATTCCTTCTGCATACAACAGGTTCATCAAAGTGGAAATCCAAAGGATTAAGGCTAACAATCCTGACATAAGCCACAGAGAAGCCTTTAGCACAGCAGCTAAAAATTGGGCACATTTACCTCACATCCACTTAGGGCAGAAGCTGGATGGAAATAATAAGCAAAGTAATTAA 510 44.51 MSLDMMASERVCYVHCNFCNTILAVSVPCNSMFTLVTVRCGHCTNLLSVNMGASLQVLPPQEDHKQPQLTSPEDSSKDRGSSSSKCSKIGSLESGERDQHRIPPIRPPEKRQRIPSAYNRFIKVEIQRIKANNPDISHREAFSTAAKNWAHLPHIHLGQKLDGNNKQSN 169
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 7963763 7967840 + CmoCh02G013370.1 Cmo02g01337 376934
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo02g01337 169 MobiDBLite consensus disorder prediction 61 116 - -
Cmo02g01337 169 Gene3D High mobility group box domain 104 157 IPR036910 -
Cmo02g01337 169 PANTHER AXIAL REGULATOR YABBY 2-RELATED 6 167 - -
Cmo02g01337 169 SUPERFAMILY HMG-box 104 153 IPR036910 -
Cmo02g01337 169 MobiDBLite consensus disorder prediction 91 108 - -
Cmo02g01337 169 PANTHER PROTEIN YABBY 6-RELATED 6 167 IPR006780 GO:0007275
Cmo02g01337 169 MobiDBLite consensus disorder prediction 73 90 - -
Cmo02g01337 169 Pfam YABBY protein 7 158 IPR006780 GO:0007275
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo02g01337 Cmo-Chr2:7963763 Cmo05g01308 Cmo-Chr5:10151693 6.73E-60 dispersed
Cmo02g01337 Cmo-Chr2:7963763 Cmo20g00155 Cmo-Chr20:765092 2.61E-50 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
9293 PF04690 YABBY 1.00E-69 CL0114 Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo02g01337 K25796 - csv:101222154 269.24