Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo02g01345 ATGGCGACGTACTTTCACGGTGGTTCAGAAATCCAAGCGAGTTCTGACGGAATCCACACTCTTTACCTTATGAATCCCAATTATGTACCTTACTCTGACACCCATTCTCAAACGCCACCCAATATGTTATTTCTCAATCCATCCACCCACGCGCTTACTCCATCCACTCTCCCTCACGCGCCGCCTTCCACTAACCACTTCGTTGGAATTCCCCTGCCCGCAACCGACACTTCTCGTCCATCCTACCACGAGATCTCAGCCCTTCATTCTGTTCCAGCTCAGCGTCTTCACTACAATCTATGGGCTCCTATGGACCAAATCTCCTCCGTGTCGGCCGCCACCGACTCCACCGATTTGAGCTTCCGCCGCCCCCGTACACACCAGGGTTTGTCCTTGAGTCTCTCCTCCCAACAGTCGCTTTACCGGACGATGTCCGCGGATCAGGAGATTCAAGGAGGCAGAGGCGGTGGTGCTCCGGATATCTCGCCGACAAGTGGGGATGAAATTAGGGTGTCCGGTAATTCACCGGCGTCGGCGTCGGTGTCGGTGGTGTCGAGTGGGGTAACGGGGTCTAAGTACTTGAAAGCGGCGCAGGAACTTTTGGATGAAGTGGTAAACGTTGGCAATGGAAATAAAACCGACAAAGGGGATAAGATGAAGATGAAGAAAGAATCAACGGCTGCGATTGCTGAACCTTCCGGCGGCGGCGCTGAAAGTACTTCCAAGCCTGTCACTGAGCTCAGTACTGCTCAAAGACAGGATCTTCAGATGAAGAAAGCTAAACTTATTGGCATGCTCGATGAGGTGGAGCAAAAGTACAGACAATACCACCAGCAAATGCAAGCAGTGGCTTGTTCGTTCGAGCAGGCGGCCGGGTTGGGCTCGGCCAAGTGCTACGCCTCGCTCGCCTTACAAACCATTTCAAAGCAATTTCGGTGCCTAAAAGATGCAATATGTGCACAAGTTAAAGCCAGTGGCAAGAGCTTGGGGGAAGAGGATTGGTCCGGTGGAAAGATTGAAGGGTCCAGATTGAGATACGTGGACCATCATGTACGGCAGCAAAGAGCTTTGCAACAATTGGGAATGATTCAACATAACACTTGGAGACCTCAGAGAGGTTTGCCTGAACGGGCTGTGTCTGTTCTTCGTGCTTGGCTGTTTGAGCATTTCCTTCACCCATATCCAAAGGATTCGGATAAAGTTATTCTCGCGAAACAAACGGGACTCACGAGGAGCCAAGTTTCAAATTGGTTTATAAACGCAAGAGTTCGTCTATGGAAGCCAATGGTTGAAGAAATGTACTCGGAAGAAATCAAAGAGCAAGAACAAAACAGTGACTCCCACGACATGAACAGACACAACAAAAACGAACCCAACAAGCAAAACCACCAGATCATGAACGATTCTCTCACCGATCAAGTTCCCAATTCCTTACAAACCCATTCAGGCTTCAACCTCGTCCGACCATCCTCCGACATGCTCTCATGTCCCAAAAGACAAAGAACAACAAACAACCTCGAAACCCCGTCGACAAAACCTACGCTTTCAAGAGACATAAACGACACAAAACATGTTCATGGAGGCGGGTTTGGTTCGTACCCGATTGATGAAATTGGAACAAGGTTCAATTCTGAGCTGTTGACGCCAAGATTTCATGCCAATGGCGTCTCGCTCACTCTTGGCCTTCCACAAACTTACCTCTCCGACCCAAACCTTCAGCTGGGGACAAGGGTTGATATCACCAATGGAGGATCTGACTTCTCCGACATCGATCCTGCCCCGGCCACCGCCTACGACGGCGGATAA 1806 50.11 MATYFHGGSEIQASSDGIHTLYLMNPNYVPYSDTHSQTPPNMLFLNPSTHALTPSTLPHAPPSTNHFVGIPLPATDTSRPSYHEISALHSVPAQRLHYNLWAPMDQISSVSAATDSTDLSFRRPRTHQGLSLSLSSQQSLYRTMSADQEIQGGRGGGAPDISPTSGDEIRVSGNSPASASVSVVSSGVTGSKYLKAAQELLDEVVNVGNGNKTDKGDKMKMKKESTAAIAEPSGGGAESTSKPVTELSTAQRQDLQMKKAKLIGMLDEVEQKYRQYHQQMQAVACSFEQAAGLGSAKCYASLALQTISKQFRCLKDAICAQVKASGKSLGEEDWSGGKIEGSRLRYVDHHVRQQRALQQLGMIQHNTWRPQRGLPERAVSVLRAWLFEHFLHPYPKDSDKVILAKQTGLTRSQVSNWFINARVRLWKPMVEEMYSEEIKEQEQNSDSHDMNRHNKNEPNKQNHQIMNDSLTDQVPNSLQTHSGFNLVRPSSDMLSCPKRQRTTNNLETPSTKPTLSRDINDTKHVHGGGFGSYPIDEIGTRFNSELLTPRFHANGVSLTLGLPQTYLSDPNLQLGTRVDITNGGSDFSDIDPAPATAYDGG 601
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 8012929 8017714 - CmoCh02G013450.1 Cmo02g01345 376942
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo02g01345 601 Pfam Associated with HOX 188 318 IPR006563 -
Cmo02g01345 601 Pfam Homeobox KN domain 385 424 IPR008422 GO:0003677|GO:0006355
Cmo02g01345 601 ProSiteProfiles 'Homeobox' domain profile. 365 428 IPR001356 GO:0003677
Cmo02g01345 601 SMART prehox3 182 320 IPR006563 -
Cmo02g01345 601 MobiDBLite consensus disorder prediction 484 516 - -
Cmo02g01345 601 MobiDBLite consensus disorder prediction 227 251 - -
Cmo02g01345 601 MobiDBLite consensus disorder prediction 437 463 - -
Cmo02g01345 601 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 6 464 - -
Cmo02g01345 601 SMART HOX_1 368 432 IPR001356 GO:0003677
Cmo02g01345 601 Gene3D - 371 451 - -
Cmo02g01345 601 SUPERFAMILY Homeodomain-like 369 435 IPR009057 -
Cmo02g01345 601 MobiDBLite consensus disorder prediction 149 177 - -
Cmo02g01345 601 CDD homeodomain 368 429 IPR001356 GO:0003677
Cmo02g01345 601 Coils Coil 252 279 - -
Cmo02g01345 601 MobiDBLite consensus disorder prediction 484 523 - -
Cmo02g01345 601 MobiDBLite consensus disorder prediction 437 459 - -
Cmo02g01345 601 MobiDBLite consensus disorder prediction 581 601 - -
Cmo02g01345 601 PANTHER BEL1-LIKE HOMEODOMAIN PROTEIN 5 6 464 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo02g01345 Cmo-Chr2:8012929 Cmo20g00834 Cmo-Chr20:4158381 3.36E-92 dispersed
Cmo14g00358 Cmo-Chr14:1624151 Cmo02g01345 Cmo-Chr2:8012929 1.69E-155 wgd
Cmo02g01345 Cmo-Chr2:8012929 Cmo20g00164 Cmo-Chr20:823761 0 wgd
Cmo02g01345 Cmo-Chr2:8012929 Cmo06g00525 Cmo-Chr6:2534813 3.60E-173 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
9294 PF07526 POX 7.10E-48 No_clan Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo02g01345 - - cmax:111490715 1121.3