Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmo02g01345 | ATGGCGACGTACTTTCACGGTGGTTCAGAAATCCAAGCGAGTTCTGACGGAATCCACACTCTTTACCTTATGAATCCCAATTATGTACCTTACTCTGACACCCATTCTCAAACGCCACCCAATATGTTATTTCTCAATCCATCCACCCACGCGCTTACTCCATCCACTCTCCCTCACGCGCCGCCTTCCACTAACCACTTCGTTGGAATTCCCCTGCCCGCAACCGACACTTCTCGTCCATCCTACCACGAGATCTCAGCCCTTCATTCTGTTCCAGCTCAGCGTCTTCACTACAATCTATGGGCTCCTATGGACCAAATCTCCTCCGTGTCGGCCGCCACCGACTCCACCGATTTGAGCTTCCGCCGCCCCCGTACACACCAGGGTTTGTCCTTGAGTCTCTCCTCCCAACAGTCGCTTTACCGGACGATGTCCGCGGATCAGGAGATTCAAGGAGGCAGAGGCGGTGGTGCTCCGGATATCTCGCCGACAAGTGGGGATGAAATTAGGGTGTCCGGTAATTCACCGGCGTCGGCGTCGGTGTCGGTGGTGTCGAGTGGGGTAACGGGGTCTAAGTACTTGAAAGCGGCGCAGGAACTTTTGGATGAAGTGGTAAACGTTGGCAATGGAAATAAAACCGACAAAGGGGATAAGATGAAGATGAAGAAAGAATCAACGGCTGCGATTGCTGAACCTTCCGGCGGCGGCGCTGAAAGTACTTCCAAGCCTGTCACTGAGCTCAGTACTGCTCAAAGACAGGATCTTCAGATGAAGAAAGCTAAACTTATTGGCATGCTCGATGAGGTGGAGCAAAAGTACAGACAATACCACCAGCAAATGCAAGCAGTGGCTTGTTCGTTCGAGCAGGCGGCCGGGTTGGGCTCGGCCAAGTGCTACGCCTCGCTCGCCTTACAAACCATTTCAAAGCAATTTCGGTGCCTAAAAGATGCAATATGTGCACAAGTTAAAGCCAGTGGCAAGAGCTTGGGGGAAGAGGATTGGTCCGGTGGAAAGATTGAAGGGTCCAGATTGAGATACGTGGACCATCATGTACGGCAGCAAAGAGCTTTGCAACAATTGGGAATGATTCAACATAACACTTGGAGACCTCAGAGAGGTTTGCCTGAACGGGCTGTGTCTGTTCTTCGTGCTTGGCTGTTTGAGCATTTCCTTCACCCATATCCAAAGGATTCGGATAAAGTTATTCTCGCGAAACAAACGGGACTCACGAGGAGCCAAGTTTCAAATTGGTTTATAAACGCAAGAGTTCGTCTATGGAAGCCAATGGTTGAAGAAATGTACTCGGAAGAAATCAAAGAGCAAGAACAAAACAGTGACTCCCACGACATGAACAGACACAACAAAAACGAACCCAACAAGCAAAACCACCAGATCATGAACGATTCTCTCACCGATCAAGTTCCCAATTCCTTACAAACCCATTCAGGCTTCAACCTCGTCCGACCATCCTCCGACATGCTCTCATGTCCCAAAAGACAAAGAACAACAAACAACCTCGAAACCCCGTCGACAAAACCTACGCTTTCAAGAGACATAAACGACACAAAACATGTTCATGGAGGCGGGTTTGGTTCGTACCCGATTGATGAAATTGGAACAAGGTTCAATTCTGAGCTGTTGACGCCAAGATTTCATGCCAATGGCGTCTCGCTCACTCTTGGCCTTCCACAAACTTACCTCTCCGACCCAAACCTTCAGCTGGGGACAAGGGTTGATATCACCAATGGAGGATCTGACTTCTCCGACATCGATCCTGCCCCGGCCACCGCCTACGACGGCGGATAA | 1806 | 50.11 | MATYFHGGSEIQASSDGIHTLYLMNPNYVPYSDTHSQTPPNMLFLNPSTHALTPSTLPHAPPSTNHFVGIPLPATDTSRPSYHEISALHSVPAQRLHYNLWAPMDQISSVSAATDSTDLSFRRPRTHQGLSLSLSSQQSLYRTMSADQEIQGGRGGGAPDISPTSGDEIRVSGNSPASASVSVVSSGVTGSKYLKAAQELLDEVVNVGNGNKTDKGDKMKMKKESTAAIAEPSGGGAESTSKPVTELSTAQRQDLQMKKAKLIGMLDEVEQKYRQYHQQMQAVACSFEQAAGLGSAKCYASLALQTISKQFRCLKDAICAQVKASGKSLGEEDWSGGKIEGSRLRYVDHHVRQQRALQQLGMIQHNTWRPQRGLPERAVSVLRAWLFEHFLHPYPKDSDKVILAKQTGLTRSQVSNWFINARVRLWKPMVEEMYSEEIKEQEQNSDSHDMNRHNKNEPNKQNHQIMNDSLTDQVPNSLQTHSGFNLVRPSSDMLSCPKRQRTTNNLETPSTKPTLSRDINDTKHVHGGGFGSYPIDEIGTRFNSELLTPRFHANGVSLTLGLPQTYLSDPNLQLGTRVDITNGGSDFSDIDPAPATAYDGG | 601 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
2 | 8012929 | 8017714 | - | CmoCh02G013450.1 | Cmo02g01345 | 376942 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmo02g01345 | 601 | Pfam | Associated with HOX | 188 | 318 | IPR006563 | - | |
Cmo02g01345 | 601 | Pfam | Homeobox KN domain | 385 | 424 | IPR008422 | GO:0003677|GO:0006355 | |
Cmo02g01345 | 601 | ProSiteProfiles | 'Homeobox' domain profile. | 365 | 428 | IPR001356 | GO:0003677 | |
Cmo02g01345 | 601 | SMART | prehox3 | 182 | 320 | IPR006563 | - | |
Cmo02g01345 | 601 | MobiDBLite | consensus disorder prediction | 484 | 516 | - | - | |
Cmo02g01345 | 601 | MobiDBLite | consensus disorder prediction | 227 | 251 | - | - | |
Cmo02g01345 | 601 | MobiDBLite | consensus disorder prediction | 437 | 463 | - | - | |
Cmo02g01345 | 601 | PANTHER | HOMEOBOX PROTEIN TRANSCRIPTION FACTORS | 6 | 464 | - | - | |
Cmo02g01345 | 601 | SMART | HOX_1 | 368 | 432 | IPR001356 | GO:0003677 | |
Cmo02g01345 | 601 | Gene3D | - | 371 | 451 | - | - | |
Cmo02g01345 | 601 | SUPERFAMILY | Homeodomain-like | 369 | 435 | IPR009057 | - | |
Cmo02g01345 | 601 | MobiDBLite | consensus disorder prediction | 149 | 177 | - | - | |
Cmo02g01345 | 601 | CDD | homeodomain | 368 | 429 | IPR001356 | GO:0003677 | |
Cmo02g01345 | 601 | Coils | Coil | 252 | 279 | - | - | |
Cmo02g01345 | 601 | MobiDBLite | consensus disorder prediction | 484 | 523 | - | - | |
Cmo02g01345 | 601 | MobiDBLite | consensus disorder prediction | 437 | 459 | - | - | |
Cmo02g01345 | 601 | MobiDBLite | consensus disorder prediction | 581 | 601 | - | - | |
Cmo02g01345 | 601 | PANTHER | BEL1-LIKE HOMEODOMAIN PROTEIN 5 | 6 | 464 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmo02g01345 | Cmo-Chr2:8012929 | Cmo20g00834 | Cmo-Chr20:4158381 | 3.36E-92 | dispersed | |
Cmo14g00358 | Cmo-Chr14:1624151 | Cmo02g01345 | Cmo-Chr2:8012929 | 1.69E-155 | wgd | |
Cmo02g01345 | Cmo-Chr2:8012929 | Cmo20g00164 | Cmo-Chr20:823761 | 0 | wgd | |
Cmo02g01345 | Cmo-Chr2:8012929 | Cmo06g00525 | Cmo-Chr6:2534813 | 3.60E-173 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
9294 | PF07526 | POX | 7.10E-48 | No_clan | Cmo | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmo02g01345 | - | - | cmax:111490715 | 1121.3 |