Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo02g01350 ATGTCGGGTTCTCCAGCTCCCAACTCCTCTGGCCACCCGCCGGAGCAGATCATGCTCTCTCTTAAACGTCACCTCCCTTTCTCTTCTATCAAACCTCCATTTGCATCTCCTGGGGACTATCACCGCTTTGCCCTCGACTCTCCACTCGCCGATCAACAACTTGACTCTATCGTAGTCAAATCTCCGCAATTGAAGCGGAAGAGTGAGGCAGCAGATTATGAAGCTGAGTCAACTGATAGAGCAGCTGGTCCTAGATTTACTGAAGTAGTTAACAGTTCCCATCAAACACCTGTATCTGTAAAAGGAGGAAAGGGAAACAAATCAAGGCTAACCAAATGCAGTAGATCAGGGCCACAGACTCCCATGTCAAATGTTGGTTCACCTTATGCAAACAATCTTACTCCAGTTGGTCCATGCCGATATGATAGTTCTCTTGGTCTCTTGACAAAGAAGTTTATTAATCTGATCAAACAAGCGGAAGATGGTATTCTTGATCTAAATAAAGCAGCCGACACGTTGGAGGTACAAAAAAGACGAATATATGATATAACAAATGTCCTTGAAGGAATTGGTCTCATAGAAAAGAAGCTTAAGAACAGAATTCAGTGGAAGGGGCTTGACGTCTCAAGATCAGGGGATGTTGATGACAACTATGCTGGTCTACAGGCGGAAGTAGAGAACCTTTCCATGGAGGAGAATGGGTTAGATGAACAAATAAGATGGGAATTTAAAAGTTGTATAATTTATCTAATTGCTAGGTGGTTATTTGTAACCGAGGAAGACATCAAGGAGTTGCCGTGTTTCCAGAATGAAACTCTTATAGCTATTAAAGCTCCCCATGGAACCACTTTAGAAGTTCCAGATCCTGATGAGGTACCTATTCATATAGCTTATCTTCCACTCACCTTTCCCATCATCTATCAGGCTGTTGACTACCCCCAAAGGAGGTATAGGATAGTCCTCAGAAGCACCATGGGCCCCATTGATGTTTACCTTGTCAGTCAGTTTGAAGAGAAGTTTGAGGAGATAAATGGTGTGGAAGTGTCCCCAAGCTTGCCGTCAAGTTCTGGGTTTAATGAAACACCTGCAGCAACGCTAGTAACGGATGATACCAGGGGAAAGGAAATTGAAACGCGGGAGCAAGATGTAAATAGAATGTGCTCTGATCTAAATGCTTCGCAGGACTTCGTGGGTGGAATTATGAAAATTGTTCCCTCGGCGGTAGATAGTGATGCTGATTACTGGCTCTTGTCTGATGCTGATGTTAGCATCACTGACATGTGGAGAACTGAACCTGGCGTTGAGTGGAATGAACTGAGTACATTTCATGAAGATTACAGTATTGACAATGTCAGCACACCCCAAACCCAGAATCCACCTTCCAATAATTCACCTGATGCGCCTTCTGCTAATCCTTCTAGCAGTTAA 1428 43.84 MSGSPAPNSSGHPPEQIMLSLKRHLPFSSIKPPFASPGDYHRFALDSPLADQQLDSIVVKSPQLKRKSEAADYEAESTDRAAGPRFTEVVNSSHQTPVSVKGGKGNKSRLTKCSRSGPQTPMSNVGSPYANNLTPVGPCRYDSSLGLLTKKFINLIKQAEDGILDLNKAADTLEVQKRRIYDITNVLEGIGLIEKKLKNRIQWKGLDVSRSGDVDDNYAGLQAEVENLSMEENGLDEQIRWEFKSCIIYLIARWLFVTEEDIKELPCFQNETLIAIKAPHGTTLEVPDPDEVPIHIAYLPLTFPIIYQAVDYPQRRYRIVLRSTMGPIDVYLVSQFEEKFEEINGVEVSPSLPSSSGFNETPAATLVTDDTRGKEIETREQDVNRMCSDLNASQDFVGGIMKIVPSAVDSDADYWLLSDADVSITDMWRTEPGVEWNELSTFHEDYSIDNVSTPQTQNPPSNNSPDAPSANPSSS 475
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 8036553 8045066 + CmoCh02G013500.1 Cmo02g01350 376947
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo02g01350 475 Coils Coil 218 238 - -
Cmo02g01350 475 Gene3D - 212 335 - -
Cmo02g01350 475 SUPERFAMILY E2F-DP heterodimerization region 217 335 IPR037241 -
Cmo02g01350 475 Pfam E2F/DP family winged-helix DNA-binding domain 142 205 IPR003316 GO:0005667|GO:0006355
Cmo02g01350 475 PANTHER TRANSCRIPTION FACTOR E2F 19 464 IPR015633 GO:0000978|GO:0006357
Cmo02g01350 475 Pfam E2F transcription factor CC-MB domain 221 334 IPR032198 GO:0046983
Cmo02g01350 475 Gene3D - 135 207 IPR036388 -
Cmo02g01350 475 SMART E2F_TDP_2 140 205 IPR003316 GO:0005667|GO:0006355
Cmo02g01350 475 MobiDBLite consensus disorder prediction 109 129 - -
Cmo02g01350 475 Coils Coil 156 176 - -
Cmo02g01350 475 CDD E2F_DD 216 335 IPR032198 GO:0046983
Cmo02g01350 475 PANTHER TRANSCRIPTION FACTOR E2FB 19 464 - -
Cmo02g01350 475 MobiDBLite consensus disorder prediction 90 129 - -
Cmo02g01350 475 MobiDBLite consensus disorder prediction 447 475 - -
Cmo02g01350 475 SUPERFAMILY Winged helix DNA-binding domain 140 203 IPR036390 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo02g01350 Cmo20g00168 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo02g01350 Cmo-Chr2:8036553 Cmo12g00363 Cmo-Chr12:2246647 7.56E-65 dispersed
Cmo02g01350 Cmo-Chr2:8036553 Cmo20g00168 Cmo-Chr20:850643 6.74E-157 wgd
Cmo02g01350 Cmo-Chr2:8036553 Cmo03g01117 Cmo-Chr3:8970606 3.36E-146 wgd
Cmo02g01350 Cmo-Chr2:8036553 Cmo07g00858 Cmo-Chr7:4049258 2.15E-140 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
9295 PF16421 E2F_CC-MB 8.70E-25 No_clan Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo02g01350 K06620 - csv:101219318 740.339