Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo02g01350 ATGTCGGGTTCTCCAGCTCCCAACTCCTCTGGCCACCCGCCGGAGCAGATCATGCTCTCTCTTAAACGTCACCTCCCTTTCTCTTCTATCAAACCTCCATTTGCATCTCCTGGGGACTATCACCGCTTTGCCCTCGACTCTCCACTCGCCGATCAACAACTTGACTCTATCGTAGTCAAATCTCCGCAATTGAAGCGGAAGAGTGAGGCAGCAGATTATGAAGCTGAGTCAACTGATAGAGCAGCTGGTCCTAGATTTACTGAAGTAGTTAACAGTTCCCATCAAACACCTGTATCTGTAAAAGGAGGAAAGGGAAACAAATCAAGGCTAACCAAATGCAGTAGATCAGGGCCACAGACTCCCATGTCAAATGTTGGTTCACCTTATGCAAACAATCTTACTCCAGTTGGTCCATGCCGATATGATAGTTCTCTTGGTCTCTTGACAAAGAAGTTTATTAATCTGATCAAACAAGCGGAAGATGGTATTCTTGATCTAAATAAAGCAGCCGACACGTTGGAGGTACAAAAAAGACGAATATATGATATAACAAATGTCCTTGAAGGAATTGGTCTCATAGAAAAGAAGCTTAAGAACAGAATTCAGTGGAAGGGGCTTGACGTCTCAAGATCAGGGGATGTTGATGACAACTATGCTGGTCTACAGGCGGAAGTAGAGAACCTTTCCATGGAGGAGAATGGGTTAGATGAACAAATAAGATGGGAATTTAAAAGTTGTATAATTTATCTAATTGCTAGGTGGTTATTTGTAACCGAGGAAGACATCAAGGAGTTGCCGTGTTTCCAGAATGAAACTCTTATAGCTATTAAAGCTCCCCATGGAACCACTTTAGAAGTTCCAGATCCTGATGAGGTACCTATTCATATAGCTTATCTTCCACTCACCTTTCCCATCATCTATCAGGCTGTTGACTACCCCCAAAGGAGGTATAGGATAGTCCTCAGAAGCACCATGGGCCCCATTGATGTTTACCTTGTCAGTCAGTTTGAAGAGAAGTTTGAGGAGATAAATGGTGTGGAAGTGTCCCCAAGCTTGCCGTCAAGTTCTGGGTTTAATGAAACACCTGCAGCAACGCTAGTAACGGATGATACCAGGGGAAAGGAAATTGAAACGCGGGAGCAAGATGTAAATAGAATGTGCTCTGATCTAAATGCTTCGCAGGACTTCGTGGGTGGAATTATGAAAATTGTTCCCTCGGCGGTAGATAGTGATGCTGATTACTGGCTCTTGTCTGATGCTGATGTTAGCATCACTGACATGTGGAGAACTGAACCTGGCGTTGAGTGGAATGAACTGAGTACATTTCATGAAGATTACAGTATTGACAATGTCAGCACACCCCAAACCCAGAATCCACCTTCCAATAATTCACCTGATGCGCCTTCTGCTAATCCTTCTAGCAGTTAA 1428 43.84 MSGSPAPNSSGHPPEQIMLSLKRHLPFSSIKPPFASPGDYHRFALDSPLADQQLDSIVVKSPQLKRKSEAADYEAESTDRAAGPRFTEVVNSSHQTPVSVKGGKGNKSRLTKCSRSGPQTPMSNVGSPYANNLTPVGPCRYDSSLGLLTKKFINLIKQAEDGILDLNKAADTLEVQKRRIYDITNVLEGIGLIEKKLKNRIQWKGLDVSRSGDVDDNYAGLQAEVENLSMEENGLDEQIRWEFKSCIIYLIARWLFVTEEDIKELPCFQNETLIAIKAPHGTTLEVPDPDEVPIHIAYLPLTFPIIYQAVDYPQRRYRIVLRSTMGPIDVYLVSQFEEKFEEINGVEVSPSLPSSSGFNETPAATLVTDDTRGKEIETREQDVNRMCSDLNASQDFVGGIMKIVPSAVDSDADYWLLSDADVSITDMWRTEPGVEWNELSTFHEDYSIDNVSTPQTQNPPSNNSPDAPSANPSSS 475
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 8036553 8045066 + CmoCh02G013500.1 Cmo02g01350 376947

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo02g01350 475 Coils Coil 218 238 - -
Cmo02g01350 475 Gene3D - 212 335 - -
Cmo02g01350 475 SUPERFAMILY E2F-DP heterodimerization region 217 335 IPR037241 -
Cmo02g01350 475 Pfam E2F/DP family winged-helix DNA-binding domain 142 205 IPR003316 GO:0005667|GO:0006355
Cmo02g01350 475 PANTHER TRANSCRIPTION FACTOR E2F 19 464 IPR015633 GO:0000978|GO:0006357
Cmo02g01350 475 Pfam E2F transcription factor CC-MB domain 221 334 IPR032198 GO:0046983
Cmo02g01350 475 Gene3D - 135 207 IPR036388 -
Cmo02g01350 475 SMART E2F_TDP_2 140 205 IPR003316 GO:0005667|GO:0006355
Cmo02g01350 475 MobiDBLite consensus disorder prediction 109 129 - -
Cmo02g01350 475 Coils Coil 156 176 - -
Cmo02g01350 475 CDD E2F_DD 216 335 IPR032198 GO:0046983
Cmo02g01350 475 PANTHER TRANSCRIPTION FACTOR E2FB 19 464 - -
Cmo02g01350 475 MobiDBLite consensus disorder prediction 90 129 - -
Cmo02g01350 475 MobiDBLite consensus disorder prediction 447 475 - -
Cmo02g01350 475 SUPERFAMILY Winged helix DNA-binding domain 140 203 IPR036390 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo02g01350 K06620 E2F3; transcription factor E2F3 - csv:101219318 740.339
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo02g01350 Cmo20g00168 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo02g01350 Cmo-Chr2:8036553 Cmo12g00363 Cmo-Chr12:2246647 7.56E-65 dispersed
Cmo02g01350 Cmo-Chr2:8036553 Cmo20g00168 Cmo-Chr20:850643 6.74E-157 wgd
Cmo02g01350 Cmo-Chr2:8036553 Cmo03g01117 Cmo-Chr3:8970606 3.36E-146 wgd
Cmo02g01350 Cmo-Chr2:8036553 Cmo07g00858 Cmo-Chr7:4049258 2.15E-140 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi6g1278 . . Bda02g00683 Bda09g01394 Bpe01g00263 . . . . . . . . . . Cpe05g00398 . . . . . . . . Cla02g02172 Cam02g2314 Cec02g2351 Cco02g2395 Clacu02g2289 Cmu02g2221 Cre02g2545 Cone1ag0555 Cone5ag1327 . . . Csa06g02465 . . Blo08g00058 Blo14g00243 . . Bpe08g00221 . Bma07g00205 Bma11g00246 . Cmo02g01350 Cmo20g00168 Cma02g01309 Cma20g00153 Car02g01097 Car20g00133 Cpe16g00820 . Bhi10g00181 . . . . . . . . . . . . . . . . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmo18g00114 CCT,CST 18 393 E2F-DP Transcription Factor Family AT3G48160 54.6 2.3e-103 373.2
Cmo04g00407 . 83 286 E2F-DP Transcription Factor Family AT5G02470 55.1 1.5e-59 227.3
Cmo16g00284 . 121 324 E2F-DP Transcription Factor Family AT5G02470 54.6 9.7e-59 224.6
Cmo03g01117 CST 11 460 E2F-DP Transcription Factor Family AT2G36010 52.3 1.6e-111 400.6
Cmo07g00858 CST 353 796 E2F-DP Transcription Factor Family AT2G36010 51.6 8.4e-108 388.3
Cmo02g01350 CST 21 454 E2F-DP Transcription Factor Family AT2G36010 51.0 7.9e-106 381.7
Cmo20g00168 CST 21 261 E2F-DP Transcription Factor Family AT2G36010 56.1 1.7e-63 241.1
Cmo02g01350 CST 24 461 E2F-DP Transcription Factor Family AT5G22220 52.5 7.3e-101 365.2
Cmo03g01117 CST 50 450 E2F-DP Transcription Factor Family AT5G22220 50.1 1.4e-88 324.3
Cmo20g00168 CST 10 261 E2F-DP Transcription Factor Family AT5G22220 60.2 8.8e-62 235.3
Cmo12g00363 CST 153 409 E2F-DP Transcription Factor Family AT1G47870 52.9 3.8e-66 249.6
Cmo05g00304 CST 155 415 E2F-DP Transcription Factor Family AT1G47870 52.7 2.7e-64 243.4
Cmo04g00407 . 83 286 E2F-DP Transcription Factor Family AT5G02470 55.1 1.5e-59 227.3
Cmo16g00284 . 121 324 E2F-DP Transcription Factor Family AT5G02470 54.6 9.7e-59 224.6
Cmo02g01350 CST 24 461 E2F-DP Transcription Factor Family AT5G22220 52.5 7.3e-101 365.2
Cmo03g01117 CST 50 450 E2F-DP Transcription Factor Family AT5G22220 50.1 1.4e-88 324.3
Cmo20g00168 CST 10 261 E2F-DP Transcription Factor Family AT5G22220 60.2 8.8e-62 235.3
Cmo03g01117 CST 11 460 E2F-DP Transcription Factor Family AT2G36010 52.3 1.6e-111 400.6
Cmo07g00858 CST 353 796 E2F-DP Transcription Factor Family AT2G36010 51.6 8.4e-108 388.3
Cmo02g01350 CST 21 454 E2F-DP Transcription Factor Family AT2G36010 51.0 7.9e-106 381.7
Cmo20g00168 CST 21 261 E2F-DP Transcription Factor Family AT2G36010 56.1 1.7e-63 241.1
Cmo12g00363 CST 153 409 E2F-DP Transcription Factor Family AT1G47870 52.9 3.8e-66 249.6
Cmo05g00304 CST 155 415 E2F-DP Transcription Factor Family AT1G47870 52.7 2.7e-64 243.4
Cmo18g00114 CCT,CST 18 393 E2F-DP Transcription Factor Family AT3G48160 54.6 2.3e-103 373.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004238 2 3 2 1 2 1 2 1 1 1 1 1 2 1 1 2 1 2 3 1 1 1 1 1 1 1 1 1 2 2 43
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
9295 PF16421 E2F_CC-MB 8.70E-25 No_clan Cmo TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo02g01350 Cmo_Chr02 FPKM 8.700533 10.886889 19.161037 20.479349 76.903519 78.075638 77.962082 26.717648 27.264313 24.602463