Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo02g01365 ATGGCGGAAGAACATAGATGCCAAGCGCCGAAGCTTTGCGTTAACAACTGCGGATTCTTCGGGAGTCCTGCGACGCAAGATCTCTGCTCAAAGTGCTACCGAGATCTGCAGTTGAAGGAACAGCAATCCTCCTCCGCCAAACTCGCCTTAAACCAAACCCTAACATCCGCCGCCGCTGCCACCATCGCGTCATCCTCCTTTGCGGACGCGTCGTTGTTAAATCTCGAATCGGATTCATTGGAAGCGAACCAGTCCTTTGAGGAGAAGGCGCAGGCGGCGGCAGATGTAACTCCGGCGCCGGCGCAGCAGCAGGCAAGCCGATGCACGACGTGCAGGCGGCGCGTAGGATTGACAGGGTTCAAGTGTAGGTGTGGGATGGTGTACTGTGGGACTCACCGGTACCCGGAGCAACACGGGTGTGAATTTGACTTCAAAGGGATGGGGAAGGATCAGATCGCGAAGGCAAATCCGGTGGTGAAAGGGGAGAAACTACAGAGGATCTGA 504 56.15 MAEEHRCQAPKLCVNNCGFFGSPATQDLCSKCYRDLQLKEQQSSSAKLALNQTLTSAAAATIASSSFADASLLNLESDSLEANQSFEEKAQAAADVTPAPAQQQASRCTTCRRRVGLTGFKCRCGMVYCGTHRYPEQHGCEFDFKGMGKDQIAKANPVVKGEKLQRI 167
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 8107913 8108416 + CmoCh02G013650.1 Cmo02g01365 376962
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo02g01365 167 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 12 56 - -
Cmo02g01365 167 ProSiteProfiles Zinc finger AN1-type profile. 102 148 IPR000058 GO:0008270
Cmo02g01365 167 ProSiteProfiles Zinc finger A20-type profile. 7 41 IPR002653 GO:0003677|GO:0008270
Cmo02g01365 167 Gene3D - 1 65 - -
Cmo02g01365 167 SUPERFAMILY AN1-like Zinc finger 95 162 IPR035896 -
Cmo02g01365 167 Gene3D - 81 163 IPR035896 -
Cmo02g01365 167 SMART AN1_Zf_4 108 145 IPR000058 GO:0008270
Cmo02g01365 167 Pfam AN1-like Zinc finger 108 144 IPR000058 GO:0008270
Cmo02g01365 167 Pfam A20-like zinc finger 12 34 IPR002653 GO:0003677|GO:0008270
Cmo02g01365 167 SMART A20_3 10 34 IPR002653 GO:0003677|GO:0008270
Cmo02g01365 167 PANTHER AN1-TYPE ZINC FINGER PROTEIN 1 167 - -
Cmo02g01365 167 PANTHER ZINC FINGER A20 AND AN1 DOMAIN-CONTAINING STRESS-ASSOCIATED PROTEIN 3 1 167 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo02g01365 Cmo-Chr2:8107913 Cmo07g00890 Cmo-Chr7:4210165 2.21E-57 dispersed
Cmo02g01365 Cmo-Chr2:8107913 Cmo20g00181 Cmo-Chr20:902855 3.46E-101 wgd
Cmo02g01365 Cmo-Chr2:8107913 Cmo03g01153 Cmo-Chr3:9136836 2.77E-22 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo02g01365 - - csv:101219115 236.113