Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo02g01374 ATGAGCGGCGATAGCCGAAGGCGAGGCCGGGCAGACAACAGTAGGTCGAAGAAGCAGAGGATAATCCGGTCCGCCGAGGAGGAGATCGAATCAAAGCTTGGGTTTGATCTTTTCTCTGAAGGCGATAAGAGGCTTGGATGGTTGCTCACTTTTGCTTCTTCAGCTTTGGAGGATCAGGACACCGGAAAGATCTATAGCTGTATCGATCTTTATTTTGTGGCACAGGATGGCAGCAGTTTCAAGTCAAAATATAAGTTTCGTCCTTACTTCTATGCAGCGACAAAGGACAAAATGGAAACTGATGTGGAGGCTTATTTGAGACGACGTTATGAAGGTCAAATAGCTGATATTGAGATTTTAGAAAAAGAAGACCTTGATCTTAAGAATCATCTGTCTGGCTTGCGCAAGGCATATTTAAAGCTATCATTTGACACTGTTCAAGAATTGATGAACGTGAAGAGTGAATTGTTGCGAGTTGTTGAAAGCAATTGGGCAAAGTCTGATGCTGCAGAAGCATATGATTCTATTTTATTTGGGAAAAGGGAACAAAAGCCTCAAGATTTTGTAGAATGCATTGTTGATCTTCGAGAGTATGATGTTCCTTACCATGTTCGCTTTGCTATTGATCATGATGTGCGCTGCGGACAATGGTACGATGTTAGTGTATCAAGCACTGGTGTTTCACTTGAGAAGAGAAAAGATCTTCTGCAACGTGCTGAAGTTCACATATGTGCATTTGATATCGAGACCACAAAGCTACCATTAAAATTTCCAGATGCTGAATATGACATGATAATGATGATTTCCTATATGGTTGATGGACATGGGTACTTGATTATCAACAGAGAGTGTGTTGGAGAAGATATCGAGAATTTGGAGTACACTCCAAAACCAGAATATGAAGGGTTCTTTAAAGTGACCAATGTGAAAAATGAGTTAGAGCTTCTCAAATTTTGGTTTGCCCATATGCGAGAGGTGAAACCTGGTATCTATGTTACCTACAATGGCGATTATTTTGACTGGCCATTCATTGAAAGCAGAGCAGCGTATCATGGATTTAAAATGAGTGATGAAGTAGGATTTCAATGCGACAAGAATCAGGGGGAATGCCGTTCTAAATTTGCTTGTCATTTGGATTGCTTTGCGTGGGTTAAGCGTGATAGTTATCTTCCTCAGGGTAGCCAAGGTTTGAAGGCCGTTACAAAAGCTAAATTGGGTTATGATCCTCTTGAAGTGAATCCCGAGGATATGGTGCGGTTTGCAAAGGAAAAGCCTCAGATGATGGCGTCCTATTCGGTTTCAGATGCTGTTGCTACATACTACTTGTACATGACCTATGTTCATCCTTTCATTTTTTCTCTAGCAACTATTATTCCGATGTCACCAGATGAGGTGTTGCGCAAAGGAAGTGGGACCCTTTGTGAGATGCTTCTAATGGTTCAGGCTTACCAGGCTAATGTTGTGTGTCCTAACAAACATCTATCAGATCCAGAGAAATTCTATAACAACCGGCTTCTTGAAAGTGAGACATACATAGGTGGTCATGTAGAATGCCTGGAGAGTGGTGTATTTAGATCCGACCTTCCTACCAGTTTTAGGCTTGATCCATCTGCCTATGATCAATTGATAAACAATCTGGATCGAGATCTGCAGTATGCCATACAAGTAGAAGGAAAAACAGACTTGGAGTTAGTGTCAAATTATAGTGATGTGAAGAATGCAATCATGGAAAAGCTTATTAGATTGCGGGATGAGCCTGTACGTGAAGAGGGCCCTCTGATATATCACCTTGATGTAGCTGCAATGTATCCCAACATTATTTTAACAAATAGACTTCAGCCGTCGTCAATAGTTACAGATGAGGTTTGCACTGCTTGTGATTTCAATCGTCCTGAGAAAACTTGTCTACGAAAACTTGAATGGGTTTGGCGTGGAGAAGTATTCATGGCTAAAAAAAGTGACTATTATCATCTGAAGAATCAAATTGAGTCTGAGTTTGTTGATAGCGGTAGTGCTCGGTTGTCAAAATCATTTCTTGAACTTCCAAAGTTGGAGCAGCAAGCAAAGCTCAAAGAACGTTTAAAGAAATACTGTCAGAAGGCTTATAAACGAGTACTTGATAAGCCAGTCAATGAAGTTCGAGAAGCAGGGATCTGCATGAGAGAAAACTCTTTCTATATTGACACTGTTCGTAGTTTTCGAGATAGAAGGTACGAATACAAAGGGCTCAATAAAGTATGGAAGGGAAAATTATCAGAAGCTAAAGCGAGTGGAAATTCGATCAAGATCCAGGAAGCACAAGACATGGTAGTTCTTTATGATTCTCTACAACTCGCTCATAAATGTATCCTCAACTCCTTTTATGGATATGTGATGCGAAAGGGTGCTCGATGGTATTCAATGGAAATGGCTGGGGTAGTTACATATACTGGAGCAAAAATCATTCAGAATGCTCGTCTGTTAATTGAAAAAATTGGAAAACCATTGGAGTTAGACACCGATGGTATCTGGTGTGCGCTACCTGGATCATTCCCAGAAAACTTTACCTTCAAAACAAAAGATCTGAAGAAGTTGACAATTTCATATCCATGTGTAATGCTTAATGTTGACGTGGCAAGGAACAACACAAATGACCAGTATCAGACGCTTATAGATCCTGTGAAGAAAATATATAAAACACATAGTGAATGCTCAATTGAATTTGAAGTAGATGGACCATACAAGGCAATGATCCTTCCTGCTTCCAAAGAAGAAGGCATTTTGATCAAGAAAAGATATGCTGTCTTCAATGATGATGGAACACTTGCAGAGCTAAAAGGCTTTGAGATTAAGCGTAGGGGGGAGTTAAAGCTCATCAAAGTTTTCCAGGCTGAACTTTTTGACAAGTTTCTTCACGGTTCCACCTTAGAAGAATGCTATTCAGTTGTTGCATCTGTTGCAAATCGCTGGCTAGATCTTCTAGATAATCAAGGAAAAGATATTGCAGATAGCGAGTTGCTTGATTATATATCTGAATCCAGTACCATGAGCAAATCTTTGGCAGACTATGGAGAGCAGAAGTCTTGTGCTGTTACCACCGCAAGACGTCTTGCAGATTTTCTTGGTGATACAATGGTCAGAGATAAAGGCCTACGTTGTCAATATATAGTTGCATGTGAACCTAAGGGAACACCTGTAAGTGAGCGTGCTGTTCCAGTTGCAATCTTTGAGACTGATGCAGAGATTATGAAATTCTATGTACGTAAATGGTGCAAGATTTCATCTGAAGTTGGCATCCGATCCATCATTGACTGGTCCTACTACAAGCAACGTCTAAGCTCAGCCATTCAAAAAATTATAACAATTCCAGCAGCCATGCAAAAGGTTGCAAATCCTGTTCCTAGGGTTGTCCATCCTGATTGGTTACATAAGAAAGTTCGTGAGAAGGATGATAAATTTCGCCAACAGAAAGTAGCTGATATGTTTGCATCCTCAAACAGAGGTAAGCATTCAAAGAAGAATAGTGATGTCAGCTGCAGCAAGCATGTGGTGAATGAAGATAATTCTGACGATTTAGAAGATTTTCAAAAGAAAACAAATTCTACAAATGGCCCCAAACCAGTTGCCCGATGTTATGATGTCAGAGGAATGAAACATTCAAGTACAAGCTATAGCGAAATAAACTCCAAGGTGCAGGATAATTTTAATGAAGGATGTGAGCCTTCTTCACCTTTGCATGTTGAAAACATTGACAAAAATGTCGATTACAATGGATGGCTTGAAATGAAGAAGCGAAAGTGGAAGGATACCTTGGACAAGAGGAAGAAGCAAAAGCTGGTAAGTTTAAGGACTCCAGGTGCTGCTAATGATGTAACACGGGAGTTAAAGGGTGCTACGAATAATAAAGAGGCTCCTAGAACAGGTGTTGGTTCATATTTTAAGAGGCATGAAGGATCTATAACACGCTTCCATTGGCAGATTTTACAGCTTGTTCAGAGTTCACAGAGTGGCCAATATTTTGCTTGGGCGGTTGTTGAAGGAGTTATGCTAAAGATTCCTATTACTGTTCCTAGAGTTTTTTACCTTAATTCCAAAGTACCTATTACAGACGAATTTGTGGGTAGGCGTGTTAACAAAACGCTTCCCCATGGAAGGCACAGTTACAACCTTTATGAGGTTGTGACTGATGAAGGTCAATTTAGAACACAGAGGAACAAACTTGCAGCCCTCCTTGCAGACCCAGAAGTAGAGGGAATCTATGAAAGCAAGGTACCATTGGAGTTCAAGTCCATCCTTCAGATTGGTTGCGTCTGTAAAGTTGATAAAACTGCTAAAAAACGAAATATTCAAGATGGATGGAGTCTGGATGAACTGCAAATGAAGACTACAACAGAATGCAATTATCTGGAAAAGCCAATCTCTTTCTTCTTTGTGTATCATAGCATTTCTGAAGGAAGAGCTATCTACATTACTTTTTTTCCCTCCACGAGATCGATAGTTGTGGTGATAGTTAGTCCTTACCAAAACAAAGACTTGTCATCAACTTTTCTTGAAAGGCAATTTCGCGAAACTTGTCAAATACTGTCCGGTGAATCACAACCATTTGAGAGTGGTATAACTTGTAAGGTTGACTATGTTGTTAACATCAAAGAAGCTGAAGTGATTTTGCAAAGATCGATAACAGAACACAGGAGCTTAAACCATGGACCTATTGTAGCTGTAATTCAATGCCCAAATGTGCAACTGCTGAAGTCAGGTGTTCGAGCATTAGATGATTTTCCATCCGTGAGCATTCCTTTTAATGCTCGGGATAGCCAATATCAGGTTCTTGGTTGGCAACAAACAGCTGCAAAGATTGGAATGCAACGTTGTGCTGCATCATCCCAATGGTTGAATGAGAGAATCTCTCTTGCAAGATATGCCCATGTACCATTAGGAAATTTTGAACTTGATTGGCTAATTTTTACAGCAGATATATTTTTTTCAAGAGCACTACACGATCAACAGCAGGTACTTTGGATATCGGATGATGGTGTTCCAGATATAGGAGGCATTAACATGGAAGATGTGTGTTTTGTGGATGAGGTCCAACAACCTGTTCTGACGTACCCTGGAGCATATAGAAAAGTTTCCGTGGAGCTGAAGATCCACCATTTGGCGGTCAATGCCCTGCTGAAGAGCAGCCAAGTGAATGAAATGGAAGGAGGTAGTTTGTTTGGCTTTGAACATGATATGCAATATGGAGCCCAACTTTCTAATGAAGACAGTGGCTTTGAAGAGGCTTCATCATCTGCGCCGACATTTCGTGTCCTGAAACAATTGATACAAAGGTGTCTTGCAGATGCTGTTACATCTGGAAATGTATATGCTGATGCAATTTTGCGGCATCTGTACCGATGGATTTGCAGCCCCCAATCAAGACTTCATGACCCTGCTCTTCATCGCTTACTCCACAAGGTTATGCAAAAAGTGTTTGCTCTTTTGTTGGCTGAGCTACGTAAATTAGGTGCCACCATTATATTTGCAAACTTCTCAAAAATTATTATAGACACGGGAAGGTTTGATCTCCAGACTGCTAAAGCATATTGTGATAGCTTGCTGAAAACAGTGCAAACAAGGGATCTGTTTGAGTGGATTGAATTGGAACCGTTACAGTTCTGGCACTCCCTGTTGTTTATGGATCAGTTTAACTACGGTGGAATCCCAGCAAAAGATGATGAGAGCACAGATATTGAATCTCAAGTTGATATAGTGGCCAACTGGAACATTGCTGAATATCTACCCAAGAAGATTCAGGATCACTTCGTTTTTATCATCTCTCAATTTTTGTATATTCCATGGAATTATGCAACCAAACAAGCTGAAGCAAGAGAATCATTGCCGCTTGGTGACACATGTACCCCGTCCATTACAGTTGCAGCTGCCGAATCGTTTGAATATCATGTTACAGAACATCTCAAAGAGCAGCTAAGCTCTTACTTCAGTGACAAACTGTTGGGAATTGTTCGTGATATTGTTCTTCATATGAAAGGGATGGACAAAAACACCCAGGATATTTTACCAGATCAACCTTCGGGTAGCATACATAAAGGAGATGCTGCATTGGAATTCATTAAGCTCGTATGCGCTGTTTTGGCTCTTGATCAAAATGTCCTGCATGATGTTCTGGTAATGAGGAAGAATTTACTGAAGTATGTTCGTGTAAGAGAGTTCGCCCCAGAAGCGGAGTTTTCTGATCCATGCTCGTCCATAATCTTACCAAACGTTATTTGCAGCTACTGTGATGATTGTCGAGATTTGGACTTGTGCCGTGACTCGGCTTTACTAGCACAAGAATGGCGCTGCGCCGTGCCACAATGCGAACAACCATACAACCGAGAAGTGATGGAGAACGCTCTGCTTCAAATCGTGAGGCAGAGGGAGCGCCTCTATCACCTACAGGATCTGGTATGCGTTCGCTGCAAGCAAGTCAAAGCAGCTCATTTGTCAGAACAGTGTGCTTGTGCTGGCTCATTTCAATGCAAAGATGTGGAAGATTTCTTCAGCAAGATGAGGATTCTCCTCAACGTAGCCACTCGTCAAAAGTTCCAATTGTTGCAAGAGTTCACCTCCTGGATCTTAGAAGTCTCATAA 6612 40.91 MSGDSRRRGRADNSRSKKQRIIRSAEEEIESKLGFDLFSEGDKRLGWLLTFASSALEDQDTGKIYSCIDLYFVAQDGSSFKSKYKFRPYFYAATKDKMETDVEAYLRRRYEGQIADIEILEKEDLDLKNHLSGLRKAYLKLSFDTVQELMNVKSELLRVVESNWAKSDAAEAYDSILFGKREQKPQDFVECIVDLREYDVPYHVRFAIDHDVRCGQWYDVSVSSTGVSLEKRKDLLQRAEVHICAFDIETTKLPLKFPDAEYDMIMMISYMVDGHGYLIINRECVGEDIENLEYTPKPEYEGFFKVTNVKNELELLKFWFAHMREVKPGIYVTYNGDYFDWPFIESRAAYHGFKMSDEVGFQCDKNQGECRSKFACHLDCFAWVKRDSYLPQGSQGLKAVTKAKLGYDPLEVNPEDMVRFAKEKPQMMASYSVSDAVATYYLYMTYVHPFIFSLATIIPMSPDEVLRKGSGTLCEMLLMVQAYQANVVCPNKHLSDPEKFYNNRLLESETYIGGHVECLESGVFRSDLPTSFRLDPSAYDQLINNLDRDLQYAIQVEGKTDLELVSNYSDVKNAIMEKLIRLRDEPVREEGPLIYHLDVAAMYPNIILTNRLQPSSIVTDEVCTACDFNRPEKTCLRKLEWVWRGEVFMAKKSDYYHLKNQIESEFVDSGSARLSKSFLELPKLEQQAKLKERLKKYCQKAYKRVLDKPVNEVREAGICMRENSFYIDTVRSFRDRRYEYKGLNKVWKGKLSEAKASGNSIKIQEAQDMVVLYDSLQLAHKCILNSFYGYVMRKGARWYSMEMAGVVTYTGAKIIQNARLLIEKIGKPLELDTDGIWCALPGSFPENFTFKTKDLKKLTISYPCVMLNVDVARNNTNDQYQTLIDPVKKIYKTHSECSIEFEVDGPYKAMILPASKEEGILIKKRYAVFNDDGTLAELKGFEIKRRGELKLIKVFQAELFDKFLHGSTLEECYSVVASVANRWLDLLDNQGKDIADSELLDYISESSTMSKSLADYGEQKSCAVTTARRLADFLGDTMVRDKGLRCQYIVACEPKGTPVSERAVPVAIFETDAEIMKFYVRKWCKISSEVGIRSIIDWSYYKQRLSSAIQKIITIPAAMQKVANPVPRVVHPDWLHKKVREKDDKFRQQKVADMFASSNRGKHSKKNSDVSCSKHVVNEDNSDDLEDFQKKTNSTNGPKPVARCYDVRGMKHSSTSYSEINSKVQDNFNEGCEPSSPLHVENIDKNVDYNGWLEMKKRKWKDTLDKRKKQKLVSLRTPGAANDVTRELKGATNNKEAPRTGVGSYFKRHEGSITRFHWQILQLVQSSQSGQYFAWAVVEGVMLKIPITVPRVFYLNSKVPITDEFVGRRVNKTLPHGRHSYNLYEVVTDEGQFRTQRNKLAALLADPEVEGIYESKVPLEFKSILQIGCVCKVDKTAKKRNIQDGWSLDELQMKTTTECNYLEKPISFFFVYHSISEGRAIYITFFPSTRSIVVVIVSPYQNKDLSSTFLERQFRETCQILSGESQPFESGITCKVDYVVNIKEAEVILQRSITEHRSLNHGPIVAVIQCPNVQLLKSGVRALDDFPSVSIPFNARDSQYQVLGWQQTAAKIGMQRCAASSQWLNERISLARYAHVPLGNFELDWLIFTADIFFSRALHDQQQVLWISDDGVPDIGGINMEDVCFVDEVQQPVLTYPGAYRKVSVELKIHHLAVNALLKSSQVNEMEGGSLFGFEHDMQYGAQLSNEDSGFEEASSSAPTFRVLKQLIQRCLADAVTSGNVYADAILRHLYRWICSPQSRLHDPALHRLLHKVMQKVFALLLAELRKLGATIIFANFSKIIIDTGRFDLQTAKAYCDSLLKTVQTRDLFEWIELEPLQFWHSLLFMDQFNYGGIPAKDDESTDIESQVDIVANWNIAEYLPKKIQDHFVFIISQFLYIPWNYATKQAEARESLPLGDTCTPSITVAAAESFEYHVTEHLKEQLSSYFSDKLLGIVRDIVLHMKGMDKNTQDILPDQPSGSIHKGDAALEFIKLVCAVLALDQNVLHDVLVMRKNLLKYVRVREFAPEAEFSDPCSSIILPNVICSYCDDCRDLDLCRDSALLAQEWRCAVPQCEQPYNREVMENALLQIVRQRERLYHLQDLVCVRCKQVKAAHLSEQCACAGSFQCKDVEDFFSKMRILLNVATRQKFQLLQEFTSWILEVS 2203
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 8145392 8170988 - CmoCh02G013740.1 Cmo02g01374 376971
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo02g01374 2203 CDD DNA_polB_epsilon_exo 240 444 - -
Cmo02g01374 2203 CDD POLBc_epsilon 503 1121 - -
Cmo02g01374 2203 Gene3D Palm domain of DNA polymerase 752 936 IPR023211 -
Cmo02g01374 2203 SMART DUF1744_2 1509 1894 IPR013697 GO:0003887|GO:0005634|GO:0006260|GO:0008270
Cmo02g01374 2203 MobiDBLite consensus disorder prediction 1159 1173 - -
Cmo02g01374 2203 Gene3D - 940 1124 IPR042087 -
Cmo02g01374 2203 SMART polmehr3 239 842 IPR006172 GO:0000166|GO:0003676|GO:0003887
Cmo02g01374 2203 MobiDBLite consensus disorder prediction 1154 1173 - -
Cmo02g01374 2203 Pfam DNA polymerase family B, exonuclease domain 74 400 IPR006133 -
Cmo02g01374 2203 Pfam DNA polymerase family B 597 1069 IPR006134 GO:0000166|GO:0003677
Cmo02g01374 2203 Gene3D DNA Polymerase, chain B, domain 1 56 233 - -
Cmo02g01374 2203 MobiDBLite consensus disorder prediction 1183 1203 - -
Cmo02g01374 2203 SUPERFAMILY DNA/RNA polymerases 486 1114 IPR043502 -
Cmo02g01374 2203 SUPERFAMILY Ribonuclease H-like 66 467 IPR012337 -
Cmo02g01374 2203 Gene3D - 238 468 IPR036397 GO:0003676
Cmo02g01374 2203 PANTHER DNA POLYMERASE EPSILON CATALYTIC SUBUNIT A 30 2200 IPR029703 GO:0003677|GO:0003887|GO:0006260|GO:0006281|GO:0008622
Cmo02g01374 2203 MobiDBLite consensus disorder prediction 1 21 - -
Cmo02g01374 2203 Pfam Domain of unknown function (DUF1744) 1525 1894 IPR013697 GO:0003887|GO:0005634|GO:0006260|GO:0008270
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo02g01374 Cmo-Chr2:8145392 Cmo20g00196 Cmo-Chr20:963617 3.51E-12 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo02g01374 K02324 - csv:101208568 4072.32