Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmo02g01376 | ATGGAGTCCTCTCACGACGATATCGCCGACGACCTACAGAGCTTGAGCTTCAACTCCACCAACACTAATCGCAGCACTAGCTCCGGCTCCGAGACTACTCTCACCGCCTCCTCCTCCTCCTTCGTTCATATCCCTTCCACTTTCAACAAGCCTCACGCGCCTTCCTCCGACCCTTGCTGGTCAGCTGTTAGCCGGATCCGATCCGAATCGTCTACTCGCCAACTCGCCTTCTCCGACCTTAAGTTCTCGCACCGTCTTGGCTCTGGCGACATTGGCTCCGTCTACCTCGCTGGACTTAAGTCCGCTGGAGATGACGGATGTCTCTTCGCGGCGAAGGTGATGGATAAGAAGGAATTGGCGAGTCGAAGTAAAGAAGGCAGAGCGAGGACTGAGAGGGAGATTTTGGAGTGTTTGGACCATCCGTTTCTTCCAAAGCTCTATGCTAGTATCGACTCGCCGAAATGGCTCTGTCTCTTGACTGAGTTCTGCCACGGCGGCGACCTCCATGTTCTCCGGCAACGGCAGCCAAACAAACGCTTCGGTGAACTCGCCGTGAGATTCTATGCATCAGAGATAGTAGTTGCTATTGAGTACCTTCACATGATGGGGATTGTTTACCGTGATTTGAAGCCGGAAAATGTGCTGGTACGATCGGACGGCCATATCATGCTCACTGATTTTGATCTCTCCTTGAAGTGTGAGGATTCAACAGCGACCCCACAGGTTATCACTGCCAAAAATGCAACAAATGGCACTGCCCGGCCAAAGAACTGCCAAATTGAGGCCCCTCCTTTCACATCCTCCTCCTGCATACTTCCAAACTGCATAGTCCCGGCAATGTCGTGTTTCAACCCGAAACGCAAGCGCAAGAAGAAGTCTAGCCACAGCAATGGACCTGAGTTTGTTGCTGAGCCGGTCGACGTCCGGTCCATGTCGTTTGTTGGCACCCACGAGTATTTGGCGCCAGAGATTGTCTCTGGTGAGGGCCATGGAAGTGCAGTGGATTGGTGGACTTTAGGGGTGTTTGTGTTTGAGTTGTTTTATGGAGTGACACCCTTTAGAGGCATGGACAATGAGCTCACCTTGGCCAACATAGTGGCCAGAGCCCTTGAGTTTCCTAAAGAACCAGTGGTGCCGACGGCGGCGAAGGACCTCATATCGCAATTACTGGTCAAAGATCCGGCAAGGCGGCTGGGGTCAACAACAGGGTCGTCGGCGATCAAGCACCACTCATTTTTCCAAGGGGTAAATTGGGCATTACTGAGATAA | 1269 | 52.56 | MESSHDDIADDLQSLSFNSTNTNRSTSSGSETTLTASSSSFVHIPSTFNKPHAPSSDPCWSAVSRIRSESSTRQLAFSDLKFSHRLGSGDIGSVYLAGLKSAGDDGCLFAAKVMDKKELASRSKEGRARTEREILECLDHPFLPKLYASIDSPKWLCLLTEFCHGGDLHVLRQRQPNKRFGELAVRFYASEIVVAIEYLHMMGIVYRDLKPENVLVRSDGHIMLTDFDLSLKCEDSTATPQVITAKNATNGTARPKNCQIEAPPFTSSSCILPNCIVPAMSCFNPKRKRKKKSSHSNGPEFVAEPVDVRSMSFVGTHEYLAPEIVSGEGHGSAVDWWTLGVFVFELFYGVTPFRGMDNELTLANIVARALEFPKEPVVPTAAKDLISQLLVKDPARRLGSTTGSSAIKHHSFFQGVNWALLR | 422 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
2 | 8174219 | 8178858 | - | CmoCh02G013760.1 | Cmo02g01376 | 376973 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmo02g01376 | 422 | Gene3D | Phosphorylase Kinase; domain 1 | 79 | 166 | - | - | |
Cmo02g01376 | 422 | MobiDBLite | consensus disorder prediction | 1 | 32 | - | - | |
Cmo02g01376 | 422 | MobiDBLite | consensus disorder prediction | 10 | 32 | - | - | |
Cmo02g01376 | 422 | SMART | serkin_6 | 80 | 413 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cmo02g01376 | 422 | SUPERFAMILY | Protein kinase-like (PK-like) | 57 | 421 | IPR011009 | - | |
Cmo02g01376 | 422 | PANTHER | FLIPPASE KINASE 1-RELATED | 2 | 422 | - | - | |
Cmo02g01376 | 422 | Pfam | Protein kinase domain | 310 | 413 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cmo02g01376 | 422 | Pfam | Protein kinase domain | 83 | 244 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cmo02g01376 | 422 | Gene3D | Transferase(Phosphotransferase) domain 1 | 309 | 421 | - | - | |
Cmo02g01376 | 422 | Gene3D | Transferase(Phosphotransferase) domain 1 | 167 | 238 | - | - | |
Cmo02g01376 | 422 | ProSiteProfiles | Protein kinase domain profile. | 80 | 413 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cmo02g01376 | 422 | PANTHER | OS11G0150700 PROTEIN | 2 | 422 | - | - | |
Cmo02g01376 | 422 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 204 | 216 | IPR008271 | GO:0004672|GO:0006468 |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cmo02g01376 | Cmo20g00198 | CST |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmo02g01376 | Cmo-Chr2:8174219 | Cmo03g00624 | Cmo-Chr3:5785792 | 3.36E-141 | dispersed | |
Cmo02g01376 | Cmo-Chr2:8174219 | Cmo02g01378 | Cmo-Chr2:8182901 | 1.13E-135 | proximal | |
Cmo02g01376 | Cmo-Chr2:8174219 | Cmo20g00198 | Cmo-Chr20:969271 | 0 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
74140 | PF00069 | Pkinase | 9.00E-35 | CL0016 | Cmo | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmo02g01376 | K08286 | - | csv:101207262 | 746.117 |