Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo02g01378 ATGACTACATTAGCTAGTACTTCTAAAATTGTTGAATCAACGGAAGAATTTGATTCTGAGAAAGCTGGGACAAGTTACACGATAGATGTAGGAAAAAGGTTTTCAATAGAGGATGACATTAATCGTCTGTTTCAGGCAATTGATATCAGAACATTACGTAACAGGTCAGGTCAGCAACATGGAGTTGACAAAGATGCGTTGCAAAAGAGTGCGATGAAGAGACCAATGAGAGTGGGTTCATCTCACATGGCAGGGATTGGAATTTCTGAGCCTGCAAGCTTAAAGCAGGCTTTGAGGGGCTTGTGCATATCTCAGGCTGCTGAAATGGCTGCTGCAAAGAGGTTAACAAGGTCTTTAGGTTCACCTGGAATCTCTGAAGCAGGAACGATTAAAAGGTTGTATAAGGCTGTGGTGGTTGAGGCCAATGGATCTGATGTGCGAATAAATGAAAGCAAAGAAAATTTGGTAGAAATTTCCATTGTTTCAGAAATTATGTCTACTTTTCAGAATAAGATGCCTGAATTGTTGCATAAAACTGAGGCAGATATATCAAACCAGGGTGCTGAGTCTTCACTTTTTAAGAACACTGGGGTATCAGAAGAGGCAAATGTGGATAGATTGATGTCAAAGGATCTTGTAGAAGTGACAAGTATAAAGCCACTTAAATCTCCTTCTTTCACTCCTTCTGGTGAGAAGGATCCGACTCTGAACAGCTTGGATAATTCCTCAACTGAAGATTTGGCAAAAAATTCAGTGCCAGAGGAGAAAGGTACAATGCGTTGTTTATCCTCTCTATCAAGCTCTGGATCTGTTATTTGGCCAAACAAATCAGCTTTCAATAATACACGTTTCATCAAACCTATTTTCAGGACCAAAAACTCTGTCAAGAAGAAAGCAAAACTTGAACCTATTTCCTCCCCTAGCGCGTTTGAAATGCGTACAGTGATGGTTGACACTGATTTGGGTTCCATAGCAGAAAAGTTTGAGAACCGAATGCCAGAAAATGCCCAGAATCATGAGAGTAAAGAAAAAGAGATAGGTTCCTCTATCTCTAGTAGCACAACTTTAGGTATTGAAGTAAGTGCAAATCTAGTAAACACAGAGTCCAGTGGACCTGGTACATCTCTCAACTGCTGTAACAGGATCAGACCAACTATTATGTCATTCGATGAGAGATCCAGATCAAGAGAGAAAGGGATGTTCTCTCAGAGCTCTAAAAGTAGTAGTATTGGTGAATGTAGCCATAGCCCAAGCATCAGTGGGGAAAGCATTCTCAGTGGATCAAGTTGTAGTGGAGTAAGGCCTCACATGTCAAGGGACTTGAAATGGGAAGCTATCCACCACATTCAGGATCAACATAAATGCCTAAGTCTGAAAAACTTCAATCTGTTAAGGAGACTTGGTCTTGGGGACATTGGGACTGTATATCTCTCTGAGCTATGCGATTCCAGCTGTCTATTTGCTATCAAAGTGATGGACAAGGAGTTCTTGGCAAGCAGAAAAAAAATACTTCGGGCACAAACTGAGAGAGAGATACTGGAAATACTTGACCATCCATTTCTCCCTACACTATATGCTCATTTTGAGACGGATGAGCAATCATGCTTGGTCATGGACTACTGTTCTGGTGGAGATCTCCATGTGCTGCAACAAAAGCAACCATGCAAGAGTTTCTCTGAGCATGCAGTCAGGTTCTATGTTGCCGAGATTCTTCTTGCCCTGGAGTACTTACACATGCAAGGCGTTATTTACCGAGACCTGAAACCCGAAAATGTTCTGGTCCGAGAAGATGGGCACATAATGCTCACAGATTTTGATTTGTCTCTTAGATGTGCTGTTAATCCAATGCTGCTTCAATCATCATCTCCAGTTGTGGAATCCACCAAGAGGAAGTTGAATCCCTGTGATGAATCTAGTTGCATTGACCCTTTCTGCCTCCACCCATCCTGGCAGGTCTCATGCTTCACCCCCAAAGTTTTATCTGCTCCATACAAATCTCGGAGAACAAAAGCAGACAATCAGGCTAGTCTATTACCACAGCTTATTGTCGAGCCAACTGGTGTGCGGTCCAATTCATTCGTAGGAACCCACGAATACCTCGCTCCTGAGATTGTTAAGGGTGATGGCCATGGGAGTGCTGTTGATTGGTGGACTTACGGGATTTTCCTGTTTGAGCTACTATATGGTAAGACTCCCTTCAAAGGTTCAGGAAATGAGGACACATTAGCGAACATAGTATCCCACACTCTCAAGTTCCCTGATAGCCCCATAGTTAGCTTTCATGCAAGAGATCTAATCAGATGTCTGTTGGCAAAGGAGCCTGAAAACCGATTAGGCGCAACAAAAGGAGCTATTGAGATTAAGCAGCATCCATTTTTTGAAGGCATCAATTGGGCTCTGATACGTTGTGCAGTTCCACCTGAGCTTCCCAAGTTCTTCGACGATGGAACTGGTGCAATGCCAGTGGATCCCGGGGAGAACACAAAGTGTAGAGATCTCGAGAATATGGAAGCGGATGCAGCAATCTTCTACCTGTTTTAG 2541 42.82 MTTLASTSKIVESTEEFDSEKAGTSYTIDVGKRFSIEDDINRLFQAIDIRTLRNRSGQQHGVDKDALQKSAMKRPMRVGSSHMAGIGISEPASLKQALRGLCISQAAEMAAAKRLTRSLGSPGISEAGTIKRLYKAVVVEANGSDVRINESKENLVEISIVSEIMSTFQNKMPELLHKTEADISNQGAESSLFKNTGVSEEANVDRLMSKDLVEVTSIKPLKSPSFTPSGEKDPTLNSLDNSSTEDLAKNSVPEEKGTMRCLSSLSSSGSVIWPNKSAFNNTRFIKPIFRTKNSVKKKAKLEPISSPSAFEMRTVMVDTDLGSIAEKFENRMPENAQNHESKEKEIGSSISSSTTLGIEVSANLVNTESSGPGTSLNCCNRIRPTIMSFDERSRSREKGMFSQSSKSSSIGECSHSPSISGESILSGSSCSGVRPHMSRDLKWEAIHHIQDQHKCLSLKNFNLLRRLGLGDIGTVYLSELCDSSCLFAIKVMDKEFLASRKKILRAQTEREILEILDHPFLPTLYAHFETDEQSCLVMDYCSGGDLHVLQQKQPCKSFSEHAVRFYVAEILLALEYLHMQGVIYRDLKPENVLVREDGHIMLTDFDLSLRCAVNPMLLQSSSPVVESTKRKLNPCDESSCIDPFCLHPSWQVSCFTPKVLSAPYKSRRTKADNQASLLPQLIVEPTGVRSNSFVGTHEYLAPEIVKGDGHGSAVDWWTYGIFLFELLYGKTPFKGSGNEDTLANIVSHTLKFPDSPIVSFHARDLIRCLLAKEPENRLGATKGAIEIKQHPFFEGINWALIRCAVPPELPKFFDDGTGAMPVDPGENTKCRDLENMEADAAIFYLF 846
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 8182901 8185916 + CmoCh02G013780.1 Cmo02g01378 376975
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo02g01378 846 PANTHER SERINE/THREONINE-PROTEIN KINASE D6PKL1 ISOFORM X1 1 819 - -
Cmo02g01378 846 Pfam Protein kinase domain 462 610 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo02g01378 846 Pfam Protein kinase domain 690 793 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo02g01378 846 MobiDBLite consensus disorder prediction 223 248 - -
Cmo02g01378 846 MobiDBLite consensus disorder prediction 223 256 - -
Cmo02g01378 846 Gene3D Transferase(Phosphotransferase) domain 1 541 609 - -
Cmo02g01378 846 SUPERFAMILY Protein kinase-like (PK-like) 439 812 IPR011009 -
Cmo02g01378 846 SMART serkin_6 461 793 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo02g01378 846 Gene3D Phosphorylase Kinase; domain 1 459 540 - -
Cmo02g01378 846 PANTHER FLIPPASE KINASE 1-RELATED 1 819 - -
Cmo02g01378 846 MobiDBLite consensus disorder prediction 392 431 - -
Cmo02g01378 846 ProSiteProfiles Protein kinase domain profile. 461 793 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo02g01378 846 ProSitePatterns Serine/Threonine protein kinases active-site signature. 582 594 IPR008271 GO:0004672|GO:0006468
Cmo02g01378 846 MobiDBLite consensus disorder prediction 400 431 - -
Cmo02g01378 846 CDD STKc_phototropin_like 459 811 - -
Cmo02g01378 846 Gene3D Transferase(Phosphotransferase) domain 1 689 810 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo02g01378 Cmo20g00200 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo02g01378 Cmo-Chr2:8182901 Cmo20g00200 Cmo-Chr20:979509 0 dispersed
Cmo02g01376 Cmo-Chr2:8174219 Cmo02g01378 Cmo-Chr2:8182901 1.13E-135 proximal
Cmo02g01378 Cmo-Chr2:8182901 Cmo03g01161 Cmo-Chr3:9165435 0 wgd
Cmo02g01378 Cmo-Chr2:8182901 Cmo07g00896 Cmo-Chr7:4259422 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
74141 PF00069 Pkinase 1.10E-35 CL0016 Cmo PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo02g01378 - - cpep:111777395 1353.19