Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo02g01407 ATGGGTCAGATTCAGTACTCTGAGAAGTACTTCGATGATACTTACGAGTATAGGCATGTGGTGCTCCCACCCGATGTGGCAAAGTTGCTTCCGAAGAATCGCCTTCTCTCGGAAAATGAGTGGCGTGCAATTGGAGTTCAGCAGAGTCGTGGGTGGGTGCACTATGCTATTCATCGACCTGAGCCGCATATCATGCTATTCCGGAGGCCCCTGAACTACCAACAGCAGCAGGAGAACCTCGCTCAACAGAACGTGCTTGCTGCTAAATGA 270 50.74 MGQIQYSEKYFDDTYEYRHVVLPPDVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRPEPHIMLFRRPLNYQQQQENLAQQNVLAAK 89
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 8350376 8351998 + CmoCh02G014070.1 Cmo02g01407 377004
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo02g01407 89 PRINTS Cyclin-dependent kinase regulatory subunit signature 3 17 IPR000789 GO:0016538
Cmo02g01407 89 PRINTS Cyclin-dependent kinase regulatory subunit signature 18 32 IPR000789 GO:0016538
Cmo02g01407 89 PRINTS Cyclin-dependent kinase regulatory subunit signature 40 54 IPR000789 GO:0016538
Cmo02g01407 89 PRINTS Cyclin-dependent kinase regulatory subunit signature 55 69 IPR000789 GO:0016538
Cmo02g01407 89 Pfam Cyclin-dependent kinase regulatory subunit 4 70 IPR000789 GO:0016538
Cmo02g01407 89 PANTHER CYCLIN-DEPENDENT KINASES REGULATORY SUBUNIT 1 86 - -
Cmo02g01407 89 SUPERFAMILY Cell cycle regulatory proteins 1 83 IPR036858 GO:0016538
Cmo02g01407 89 Gene3D - 1 83 IPR036858 GO:0016538
Cmo02g01407 89 ProSitePatterns Cyclin-dependent kinases regulatory subunits signature 1. 6 24 IPR000789 GO:0016538
Cmo02g01407 89 PANTHER CYCLIN-DEPENDENT KINASES REGULATORY SUBUNIT/60S RIBOSOME SUBUNIT BIOGENESIS PROTEIN NIP7 1 86 - -
Cmo02g01407 89 SMART CKS_2 3 72 IPR000789 GO:0016538
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo02g01407 Cmo13g00270 CCT
Cmo02g01407 Cmo20g00563 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo13g00270 Cmo-Chr13:2208870 Cmo02g01407 Cmo-Chr2:8350376 4.86E-51 transposed
Cmo02g01407 Cmo-Chr2:8350376 Cmo20g00563 Cmo-Chr20:2710788 3.20E-61 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo02g01407 K02219 - egr:104421234 172.555