Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo02g01436 ATGGATTTCGACTCTGTTTTTGACCTCCCTGTTAAGTTCACCGAGCATCGTAACCATGTTAAGCTCTCTTCAATGCCGGAAATTACGCCGAGAGTTGTACGAATTTCCTTCACCGACGGTGACGCCACCGATTCCTCCAGTGATGATGAGAACGAAATGTTTGGTCGCCGCAGAGTGAAGAAGTTTGTGAATGAGATTACGATTGAGCCGTCTTGTTCTGGAGAAGGAAATGGAATCTGGGGTGTGAACAGATCGGCAAGAAATGGCCGGAGACGGTCGTCCGGGAAATGTGGGGTTTCGTCCAGGAGTCGTCGGTCGGTGAAGATGCCGGATGGGAAGAAGTTCCGCGGTGTGAGACAAAGACCGTGGGGAAAATGGGCTGCGGAAATCAGAGACCCACTGCGCCGTGTACGGGTGTGGCTGGGAACTTATGACACAGCAGAGGAAGCTGCCATGGTTTACGACAACGCCGCCATTCAACTACGGGGTCCTGATGCACTGACCAATTTCACCACCCAATCGCCCAAAAAATGCTCCGCCTACGACTCCGGCGAAGAGTCGAACAACAACATTTGCTCTCCGACCTCAGTCCTCCGGTGTCCATCGCCTCCAAACGAAGAGGCCCAATCTCAACTCCCCGGCGAGCCAGACAACTCGTCCGTATCAGAAAATTTCTCATCGGAGTTCTCAGACTTCTCGAGCTACTCCGACACCTTCATTCCGGACGACATTTTCGCCTTCGAATCTTCAATTCCGACATTGTTAGACGACGAGATAGGCCTACATCACCAAACCAACTTCTTCGGCGATGACAGTTTCTTCAACGGCGTGTTTCACAGTCCCATCGAAGAAACCGGGTTCGGGTTCGGGTTCGAGTACCCTACCCCCCCTACAGACGACTTCTTCCAAGACTTCAGCGACGTGTTCGGTTCGGATCCTCTCGTTGCCCTTTAA 954 52.41 MDFDSVFDLPVKFTEHRNHVKLSSMPEITPRVVRISFTDGDATDSSSDDENEMFGRRRVKKFVNEITIEPSCSGEGNGIWGVNRSARNGRRRSSGKCGVSSRSRRSVKMPDGKKFRGVRQRPWGKWAAEIRDPLRRVRVWLGTYDTAEEAAMVYDNAAIQLRGPDALTNFTTQSPKKCSAYDSGEESNNNICSPTSVLRCPSPPNEEAQSQLPGEPDNSSVSENFSSEFSDFSSYSDTFIPDDIFAFESSIPTLLDDEIGLHHQTNFFGDDSFFNGVFHSPIEETGFGFGFEYPTPPTDDFFQDFSDVFGSDPLVAL 317
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 8468063 8469016 - CmoCh02G014360.1 Cmo02g01436 377033
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo02g01436 317 SUPERFAMILY DNA-binding domain 114 172 IPR016177 GO:0003677
Cmo02g01436 317 Gene3D AP2/ERF domain 113 173 IPR036955 GO:0003700|GO:0006355
Cmo02g01436 317 ProSiteProfiles AP2/ERF domain profile. 114 171 IPR001471 GO:0003700|GO:0006355
Cmo02g01436 317 MobiDBLite consensus disorder prediction 200 225 - -
Cmo02g01436 317 Pfam AP2 domain 114 163 IPR001471 GO:0003700|GO:0006355
Cmo02g01436 317 PRINTS Ethylene responsive element binding protein signature 137 153 IPR001471 GO:0003700|GO:0006355
Cmo02g01436 317 PRINTS Ethylene responsive element binding protein signature 115 126 IPR001471 GO:0003700|GO:0006355
Cmo02g01436 317 SMART rav1_2 114 177 IPR001471 GO:0003700|GO:0006355
Cmo02g01436 317 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 10 313 - -
Cmo02g01436 317 MobiDBLite consensus disorder prediction 83 116 - -
Cmo02g01436 317 CDD AP2 113 170 IPR001471 GO:0003700|GO:0006355
Cmo02g01436 317 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR CRF2 10 313 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo02g01436 Cmo-Chr2:8468063 Cmo04g00753 Cmo-Chr4:3745659 4.49E-84 dispersed
Cmo15g01334 Cmo-Chr15:9153236 Cmo02g01436 Cmo-Chr2:8468063 2.17E-171 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
9304 PF00847 AP2 3.80E-14 CL0081 Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo02g01436 - - csv:101210444 496.893