Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmo02g01436 | ATGGATTTCGACTCTGTTTTTGACCTCCCTGTTAAGTTCACCGAGCATCGTAACCATGTTAAGCTCTCTTCAATGCCGGAAATTACGCCGAGAGTTGTACGAATTTCCTTCACCGACGGTGACGCCACCGATTCCTCCAGTGATGATGAGAACGAAATGTTTGGTCGCCGCAGAGTGAAGAAGTTTGTGAATGAGATTACGATTGAGCCGTCTTGTTCTGGAGAAGGAAATGGAATCTGGGGTGTGAACAGATCGGCAAGAAATGGCCGGAGACGGTCGTCCGGGAAATGTGGGGTTTCGTCCAGGAGTCGTCGGTCGGTGAAGATGCCGGATGGGAAGAAGTTCCGCGGTGTGAGACAAAGACCGTGGGGAAAATGGGCTGCGGAAATCAGAGACCCACTGCGCCGTGTACGGGTGTGGCTGGGAACTTATGACACAGCAGAGGAAGCTGCCATGGTTTACGACAACGCCGCCATTCAACTACGGGGTCCTGATGCACTGACCAATTTCACCACCCAATCGCCCAAAAAATGCTCCGCCTACGACTCCGGCGAAGAGTCGAACAACAACATTTGCTCTCCGACCTCAGTCCTCCGGTGTCCATCGCCTCCAAACGAAGAGGCCCAATCTCAACTCCCCGGCGAGCCAGACAACTCGTCCGTATCAGAAAATTTCTCATCGGAGTTCTCAGACTTCTCGAGCTACTCCGACACCTTCATTCCGGACGACATTTTCGCCTTCGAATCTTCAATTCCGACATTGTTAGACGACGAGATAGGCCTACATCACCAAACCAACTTCTTCGGCGATGACAGTTTCTTCAACGGCGTGTTTCACAGTCCCATCGAAGAAACCGGGTTCGGGTTCGGGTTCGAGTACCCTACCCCCCCTACAGACGACTTCTTCCAAGACTTCAGCGACGTGTTCGGTTCGGATCCTCTCGTTGCCCTTTAA | 954 | 52.41 | MDFDSVFDLPVKFTEHRNHVKLSSMPEITPRVVRISFTDGDATDSSSDDENEMFGRRRVKKFVNEITIEPSCSGEGNGIWGVNRSARNGRRRSSGKCGVSSRSRRSVKMPDGKKFRGVRQRPWGKWAAEIRDPLRRVRVWLGTYDTAEEAAMVYDNAAIQLRGPDALTNFTTQSPKKCSAYDSGEESNNNICSPTSVLRCPSPPNEEAQSQLPGEPDNSSVSENFSSEFSDFSSYSDTFIPDDIFAFESSIPTLLDDEIGLHHQTNFFGDDSFFNGVFHSPIEETGFGFGFEYPTPPTDDFFQDFSDVFGSDPLVAL | 317 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
2 | 8468063 | 8469016 | - | CmoCh02G014360.1 | Cmo02g01436 | 377033 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmo02g01436 | 317 | SUPERFAMILY | DNA-binding domain | 114 | 172 | IPR016177 | GO:0003677 | |
Cmo02g01436 | 317 | Gene3D | AP2/ERF domain | 113 | 173 | IPR036955 | GO:0003700|GO:0006355 | |
Cmo02g01436 | 317 | ProSiteProfiles | AP2/ERF domain profile. | 114 | 171 | IPR001471 | GO:0003700|GO:0006355 | |
Cmo02g01436 | 317 | MobiDBLite | consensus disorder prediction | 200 | 225 | - | - | |
Cmo02g01436 | 317 | Pfam | AP2 domain | 114 | 163 | IPR001471 | GO:0003700|GO:0006355 | |
Cmo02g01436 | 317 | PRINTS | Ethylene responsive element binding protein signature | 137 | 153 | IPR001471 | GO:0003700|GO:0006355 | |
Cmo02g01436 | 317 | PRINTS | Ethylene responsive element binding protein signature | 115 | 126 | IPR001471 | GO:0003700|GO:0006355 | |
Cmo02g01436 | 317 | SMART | rav1_2 | 114 | 177 | IPR001471 | GO:0003700|GO:0006355 | |
Cmo02g01436 | 317 | PANTHER | SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR | 10 | 313 | - | - | |
Cmo02g01436 | 317 | MobiDBLite | consensus disorder prediction | 83 | 116 | - | - | |
Cmo02g01436 | 317 | CDD | AP2 | 113 | 170 | IPR001471 | GO:0003700|GO:0006355 | |
Cmo02g01436 | 317 | PANTHER | ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR CRF2 | 10 | 313 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmo02g01436 | Cmo-Chr2:8468063 | Cmo04g00753 | Cmo-Chr4:3745659 | 4.49E-84 | dispersed | |
Cmo15g01334 | Cmo-Chr15:9153236 | Cmo02g01436 | Cmo-Chr2:8468063 | 2.17E-171 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
9304 | PF00847 | AP2 | 3.80E-14 | CL0081 | Cmo | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmo02g01436 | - | - | csv:101210444 | 496.893 |