Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo02g01438 ATGGAAGCTCTGTGGATTTTCAGCTTCGTTCTCGTTCTGGGGTTGGTTTTTGCGCCGATCAATGGCGACCCAGTTGAAGATAAGCGAGCTTTGCTTGATTTTGTGAAGAATCTTCCTCATTCTCGCTCTCTTAATTGGAATGCGGCTTCTCCGGTTTGCCATTACTGGACTGGTATAACTTGCAGTAAAGATGATTCTCGTGTTATAGCCGTTCGATTGCCCGGAGTTGGCTTCCACGGCCCGATTCCGGCGAACACTCTCAGCCGGCTCTCGGCGTTACAAATCTTGAGTCTAAGATCCAACCGTATAACAGGGGATTTCCCATCTGATTTCTCAAATCTTATGAACTTGTCTTATCTTTATCTTCAGTTCAACAACTTCTCCGGGCCATTGCCTTCCAATTTCTCTGTTTGGAAGAATCTCACCTCTGTGAATCTCTCTAACAATGGCTTCAATGGCCGCATTCCTTATTCGCTTTCTAATCTTCCAGCACTCACGGGTTTGAGTCTCGCAAATAACTCTCTCTCAGGAGAAATCCCTGACCTCCAAATGCCCAAATTGCAGATTCTGGATTTATCCAACAACAAACTGAATGGGAGTGTGCCTAAATCACTACAGAGATTTCCAAGGTCTGTATTTGTAGGCAATGACATATCCTTCGACAGTTCTTCGCCAAACAATCCTCCCCTGCTCCCACCATTGCCTTTGTGGAATGAAAAGCCCAAGAATGCTGGAGGGCTTGGAGAAGCAGCATTATTAGGAATTATAATAGCTGGTGCTATTCTGGGGCTCTTAGCATTTGGCTTTCTGATACTTGTATGCTGTTCAAGAAGGAAGAGGGAAGCATATTCAGGGGATCTGCAGAAAGGTGGAATGTCGCCGGAGAAGGTGATATCAAGGACTCAAGATGCAAACAACAGATTGGTGTTCTTTGAGGGGTGCCATTATGCTTTTGACTTGGAGGATTTGTTGAGGGCTTCTGCTGAGGTGTTGGGGAAGGGGACTTTTGGTACTGCTTACAAAGCAATTCTGGAGGATGCCACCACTGTTGTTGTTAAGAGGTTGAAGGATGTAAGTGCTGGGAAACGTGATTTTGAGCAGCAAATGGAGATTGTGGGCAGTATCAGGCACGAGAATGTGGCCGAGTTGAAGGCCTATTATTATTCCAAAGATGAGAAGCTGATGGTTTATGATTTCTATGGTCAGGGTAGCGTCTCGGCTATGTTGCACGGTGAACGCGGAGAGGAAAAGACCCCATTAGATTGGGACACTAGATTGAGAATTGCAGTTGGTGCAGCACGAGGGATTGCTCGAGTCCATGCCGAAAATGGAGGGAAGCTAGTCCATGGCAATGTGAAATCCTCAAACATCTTTCTAAACTCTCAACAATACGGATGTGTGTCTGATCTCGGATTAGCAACCATAACAAGCTCACTCTCTCCACCTATATCCCGTGCTGCTGGTTACCGAGCCCCGGAAGTGACCGACACCCGCAAGGCAACACAGGCTTCAGATGTTTTCAGCTTCGGCGTGGTACTCCTCGAGCTTCTTACCGGAAAGTCTCCAATACACGCAACCGGTGGCGAAGAGATCGTCCACTTGGTGAGATGGGTTCACTCAGTTGTCCGAGAGGAGTGGACAGCTGAAGTATTTGATATACAGCTAATGAGGTATCCCAACATAGAGGAAGAAATGGTTGAGATGTTGCAGATAGCCTTATCATGTGTGGCCAGGATACCAGATCAGAGACCTAAAATGGCCGAAGTTGTGACGATGATCGAAACCGTTCGACCAATGGAAGCCGAGAATCGACCTTCTTCCACGCATCAATCTGAAACTTCAATGCCACAAGTTGTTGGGACAGAAAATTTAGCCTCTCAGTGA 1884 46.66 MEALWIFSFVLVLGLVFAPINGDPVEDKRALLDFVKNLPHSRSLNWNAASPVCHYWTGITCSKDDSRVIAVRLPGVGFHGPIPANTLSRLSALQILSLRSNRITGDFPSDFSNLMNLSYLYLQFNNFSGPLPSNFSVWKNLTSVNLSNNGFNGRIPYSLSNLPALTGLSLANNSLSGEIPDLQMPKLQILDLSNNKLNGSVPKSLQRFPRSVFVGNDISFDSSSPNNPPLLPPLPLWNEKPKNAGGLGEAALLGIIIAGAILGLLAFGFLILVCCSRRKREAYSGDLQKGGMSPEKVISRTQDANNRLVFFEGCHYAFDLEDLLRASAEVLGKGTFGTAYKAILEDATTVVVKRLKDVSAGKRDFEQQMEIVGSIRHENVAELKAYYYSKDEKLMVYDFYGQGSVSAMLHGERGEEKTPLDWDTRLRIAVGAARGIARVHAENGGKLVHGNVKSSNIFLNSQQYGCVSDLGLATITSSLSPPISRAAGYRAPEVTDTRKATQASDVFSFGVVLLELLTGKSPIHATGGEEIVHLVRWVHSVVREEWTAEVFDIQLMRYPNIEEEMVEMLQIALSCVARIPDQRPKMAEVVTMIETVRPMEAENRPSSTHQSETSMPQVVGTENLASQ 627
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 8481763 8485537 - CmoCh02G014380.1 Cmo02g01438 377035
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo02g01438 627 Pfam Leucine rich repeat 82 127 IPR001611 GO:0005515
Cmo02g01438 627 MobiDBLite consensus disorder prediction 599 627 - -
Cmo02g01438 627 Gene3D Phosphorylase Kinase; domain 1 292 399 - -
Cmo02g01438 627 Pfam Protein tyrosine and serine/threonine kinase 329 592 IPR001245 GO:0004672|GO:0006468
Cmo02g01438 627 ProSitePatterns Protein kinases ATP-binding region signature. 331 362 IPR017441 GO:0005524
Cmo02g01438 627 SUPERFAMILY L domain-like 37 208 - -
Cmo02g01438 627 Pfam Leucine rich repeat N-terminal domain 26 62 IPR013210 -
Cmo02g01438 627 Gene3D Transferase(Phosphotransferase) domain 1 401 620 - -
Cmo02g01438 627 SUPERFAMILY Protein kinase-like (PK-like) 329 594 IPR011009 -
Cmo02g01438 627 Gene3D Ribonuclease Inhibitor 136 220 IPR032675 -
Cmo02g01438 627 ProSiteProfiles Protein kinase domain profile. 325 596 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo02g01438 627 PANTHER PROTEIN, PUTATIVE-RELATED 21 607 - -
Cmo02g01438 627 MobiDBLite consensus disorder prediction 601 627 - -
Cmo02g01438 627 Pfam Leucine Rich repeats (2 copies) 163 199 IPR025875 -
Cmo02g01438 627 Gene3D Ribonuclease Inhibitor 26 135 IPR032675 -
Cmo02g01438 627 PANTHER OS05G0588300 PROTEIN 21 607 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo02g01122 Cmo-Chr2:6813662 Cmo02g01438 Cmo-Chr2:8481763 0 dispersed
Cmo02g01438 Cmo-Chr2:8481763 Cmo16g00084 Cmo-Chr16:387197 0 dispersed
Cmo02g01438 Cmo-Chr2:8481763 Cmo15g01332 Cmo-Chr15:9137087 0 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
74144 PF07714 PK_Tyr_Ser-Thr 3.60E-33 CL0016 Cmo PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo02g01438 - - csv:101211836 1067.37