Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo02g01448 ATGGTTGCTCAAGGACTCGACAAGCGTCCATTGAAAGAGTTGGCGTCTGAGATCACTAATCGCCAATTCAATTGTGTTCGATTGACTTGGTCTGTTCATATGTTTACTCGTTATGCATATGAGTGTGTTGGTGATGTCTTAGATGGTCTAGATATTGCTGATGTCAAGAGTGGAGTTGCAAAGCACAACCCTGAGATATTGAAAATGACTGTTGCTAAGGCGTTTCAAACCGTTATTAATTGTTTGGGCTCAGAAGGCATCATGGTTATTTTAGATAATCATATTAGTCAGCCGAGGTGGTGCTGCTCTCTTGATGATGGCAATGGTTTCTTTGGAGATCGCAATTTCAACCCTAATGAATGGCTTCAAGGCTTGTCATTTGTTGCTGCGCAATTCACTTGTAATCCACATGTGGTAGGAATGAGTCTAAGAAACGAGCTTCGAGGGCCATTTACAAACAATGATGCTTGGTGCTATTACATGAGAAGAGGAAGCCAACTAATCCATAGAATAAACCCAAATCTTCTCATAATCATTTCTGGATTAAACTATGGCAATGATTTAAGTCAACTAAAGAAAAGGCCACTAGGCTATACCTTTCAGAACAAAGTAGTGTTGGAAGCACATCTCTATTCGTTTAGTGGGGATAACGAAAGCAAGTTTGTGAAAAAGCCATTAAACATAATATGCAACGAAATCATGGAGAAGTTTGAACGGGAAGCTGGGTTCGTAGTGGACATGAAGAATCCTTATCCTTTGTTCATTAGTGAATTTGGGTATAATCAATCAGGGGGCAACGAGGCTGAGAATCGGTTCATGAGTTGCTTTTTGGCTCGAATTGCCGAGAAGGATATTGATTGGGCCTTGTGGGCGTTCCAAGGAAGTTATATGTATAGACAAGGTCATGTTGATCCTGATGAAAGTTTTGGTGTTATGGATCACTCTTGGACTAAAGATCGTAACCCAAAACTTAAACAAATGCTTCAACTTATCAAGAGAGTGAATCAAGATCTAAATTCTAATGCACCAATGTCATACATAATGCTACATCCGGTATCAGGGCAATGTGTCAAATCCGACGGCAAAGGAGGAATTGAACTCGGCGATTGTGCCACTCCAACCCAATGGAACCATAGTGGAGATGCAAGTCCGATGAAGTTGTTGTCAAACGGGCAGTGTTTGAAGTCCGCGGGAGATGGAAAATCGCCAATCGTATCCATTGATTGCTCCGGTGACGAATACAATTGGACGGTGGCTTCCAAAGCAAAGCTCCAATTGTCCACAAAAGTTGGCGAAGAGAGTTTTTGCTTGGAGAAGGAATCTGAAACTTCAATTGTTGTGAAGAAATGTATTTGTCTAGACGCGGAGAGTTGCATGGATGATCCTCAGAGTCAATGGTTCAAGCTTGTTCCAACCAATGTTGCTTAG 1428 41.53 MVAQGLDKRPLKELASEITNRQFNCVRLTWSVHMFTRYAYECVGDVLDGLDIADVKSGVAKHNPEILKMTVAKAFQTVINCLGSEGIMVILDNHISQPRWCCSLDDGNGFFGDRNFNPNEWLQGLSFVAAQFTCNPHVVGMSLRNELRGPFTNNDAWCYYMRRGSQLIHRINPNLLIIISGLNYGNDLSQLKKRPLGYTFQNKVVLEAHLYSFSGDNESKFVKKPLNIICNEIMEKFEREAGFVVDMKNPYPLFISEFGYNQSGGNEAENRFMSCFLARIAEKDIDWALWAFQGSYMYRQGHVDPDESFGVMDHSWTKDRNPKLKQMLQLIKRVNQDLNSNAPMSYIMLHPVSGQCVKSDGKGGIELGDCATPTQWNHSGDASPMKLLSNGQCLKSAGDGKSPIVSIDCSGDEYNWTVASKAKLQLSTKVGEESFCLEKESETSIVVKKCICLDAESCMDDPQSQWFKLVPTNVA 475
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 8526968 8528553 + CmoCh02G014480.1 Cmo02g01448 377045

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo02g01448 475 Gene3D - 347 469 - -
Cmo02g01448 475 SUPERFAMILY (Trans)glycosidases 4 329 IPR017853 -
Cmo02g01448 475 Pfam Cellulase (glycosyl hydrolase family 5) 10 292 IPR001547 GO:0004553|GO:0071704
Cmo02g01448 475 PANTHER CELLULASE FAMILY PROTEIN (AFU_ORTHOLOGUE AFUA_5G14560) 1 471 - -
Cmo02g01448 475 Gene3D Glycosidases 1 332 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo02g01448 K01179 E3.2.1.4; endoglucanase [EC:3.2.1.4] - csv:101211910 754.207
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo02g01448 Cmo-Chr2:8526968 Cmo02g01450 Cmo-Chr2:8534415 0 dispersed
Cmo02g01448 Cmo-Chr2:8526968 Cmo02g01449 Cmo-Chr2:8530879 0 tandem
Cmo02g01014 Cmo-Chr2:6188480 Cmo02g01448 Cmo-Chr2:8526968 0 transposed
Cmo12g00632 Cmo-Chr12:3991561 Cmo02g01448 Cmo-Chr2:8526968 0 transposed
Cmo15g01324 Cmo-Chr15:9086648 Cmo02g01448 Cmo-Chr2:8526968 2.20E-27 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g59 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone8ag0270 . . . . . Chy09g01270 . . . Bda07g00471 . . Bpe11g00649 . . . Cmo02g01448 . . . . . . . Bhi12g00175 . . . . . Lcy12g1597 Cla01g00215 Cam01g0222 Cec01g0213 Cco01g0221 Clacu01g0216 Cmu01g0210 Cre09g2298 Lsi09g00202 . . Cme09g01813
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000102 1 5 0 0 1 17 0 16 15 11 16 15 7 9 8 11 14 2 0 12 12 11 2 7 10 18 6 7 5 3 241
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo02g01448 Cmo_Chr02 FPKM 2.54 3.623821 1.197135 1.37285 8.782011 9.251846 12.038533 0.0 0.0 0.0