Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo02g01456 ATGAGGCAGCAGAAAGTGACAAGAGAAACATCAAGTAATTTATCTTCTTTCCTTAAGCCCCGCAATGCTTGCAAGGTGAGATGGTTTTCAGAAAAGGAGGCAGAGGAACTCTACAGTCTTGCTAATGAGATTGGTAGTGATTTCTTTGGAGATACTAATACTGGACCAAATAATTCCCTTACCACGATTACTGCAGTTATGGAAAGATTTTTTCCGCACTTGAAGCTCGGCCAGATTGTTGCGGATATGGAAGTTAAGCCTGGTTATGGAGTGTTTGCTACAGATTTCAATATTTCAAAGACAATGCAGTTATCACAGCAGGAGAAAATACTACTGTTTGTTGCTCAAAAGGATAATACTGAGACGTCTGCTTGCATAATCAGTCCTCCACAGGATACTGGGCCACAGCTTCCAACGAATGTTACTCATATGCTTAAATTAGGAGCAAATCTTCTCCAAGCGATTGGTAACTTCAATGGTCATTATGTTATAGCAGTTGCCATTATGGGGACTGCACCACTGCCTGACTCCTCGGTGCTGCAAGATTATGTACAGACGGTTGTGTCTACTGTGGATCCAGATTCTGATATAATCGAGGGCCCATCACGAATATCGCTTAATTGCCCCATAAGCTATACCCGAATCAAGGTTCCTGTGAAAAGTCGTTCTTGTAAACATCTTCAGGTCATTAGAGAAGTGGCTGAGAACGTTACTGAAGTGATTATATCAGCAGATGGATCATGGAAGGCCATACTTGATAATGGGGATGGTCGGCCATTGGATGATTCTCTTAACCTTCAGAATGAAAGGGATCAAGAGTCTACTGTTCCTGTTGTGTTAGATCTTATTGAAGTTGATGATGATATTAACATCTGCGATTTGGAGATTGAAGACGAAAAACCTTGTATTGGTAACAAAAACTTTGCGGCTGTCTTGGACGATGACTTTTGGTCTGGAATAGATACTGATAGGATTTTAACCTCAAGTGCTAGGACAGATGCTCCAATTGGTAATAACCCGCCTGCACCTAATTTTGCTGGCCTTATGCAATCGGCTGTCTTGACTAATCCTGTTACACCTGTCCTTAATAACCATGGTGCGGGGGTTCCAGGGCATGTCATCTTTTCGTCTCCTGCATTGTATGATCAAAATAATTTGCAGAGTCAAGCTTTGAATTCAAATGAAAACAGTGAGTACGGGAGGACGACATCAATAGCGAGACCCCTAAGCAGGATGCCGACTACAGCTCAAGCCCTTCCTTCTCTGTCCCAAGCATCAGGTCAGCAGTATAGTTCAAGAACAACAACCATTTCCTCAGCTCCTCAAGTCGGACCAAGTATTCCAACTAACAGAGATGGTTTAAATACGATATCTCGTGATTCAGAAAGGAGCCAACAATTTCCGAGACGTCCTGGAGATTCACATCATGCAACAAACCTAGCTCCCTTTCACCACCCACCAACCTTGCAGAATTGGGATCCTCTGGATCATTCCTTCACTCCTGGTCAATCTGTTCAAGCATCGACTGCTTTAAGGCCATCCAGGGGGCTATTAACAGATTTCCAGAATCCTCACCTTCAGCAAGCGCTCAATTTAAGGATGTCCCAACTCCGGAATCAGAATCCAAGCAATAATGTCCGGCCATCATTACCATTCTCAAGAGCTATGAGTCAAGTAGGAGGTGGCTATAGTGGACCTTCTTATGCGGCTGTAACACCTAATAGTCAAAATGCAAGAATGATGGTTGCTTCCCAGCGAGCTGAGCTGATGAGACAATCTTCAGCTATGTCGTTACAAAATCAAACTTTCAGATCAGCCCATTCTCTCCAAACAACTCCTGATGGGCTTAGGATGCCAACTGCTGGGGAGCTGAGAAATGTTGGAGGAATGTCTCAATCTGTTACCCCGGCTGCGGGTTTGGTAGAGCCATCATCAGAGCAGAACTGGCAGCCCTCAGGTCGAATGCGTGGCAGTCTTTCTGGTCGAGCCTTTTCTGATGCCCATGGCCACTTAATTATCCACCCAACTCAACCTGTACAGTCTGCTCGACCTCCATCTAACTCGACTCCTACTCAACCCAGTGCTCCATCCACGCAGGCTCTGGGCCCCAATGGATTGGATACACTGGTTCCAAGGACAAGATAA 2145 44.71 MRQQKVTRETSSNLSSFLKPRNACKVRWFSEKEAEELYSLANEIGSDFFGDTNTGPNNSLTTITAVMERFFPHLKLGQIVADMEVKPGYGVFATDFNISKTMQLSQQEKILLFVAQKDNTETSACIISPPQDTGPQLPTNVTHMLKLGANLLQAIGNFNGHYVIAVAIMGTAPLPDSSVLQDYVQTVVSTVDPDSDIIEGPSRISLNCPISYTRIKVPVKSRSCKHLQVIREVAENVTEVIISADGSWKAILDNGDGRPLDDSLNLQNERDQESTVPVVLDLIEVDDDINICDLEIEDEKPCIGNKNFAAVLDDDFWSGIDTDRILTSSARTDAPIGNNPPAPNFAGLMQSAVLTNPVTPVLNNHGAGVPGHVIFSSPALYDQNNLQSQALNSNENSEYGRTTSIARPLSRMPTTAQALPSLSQASGQQYSSRTTTISSAPQVGPSIPTNRDGLNTISRDSERSQQFPRRPGDSHHATNLAPFHHPPTLQNWDPLDHSFTPGQSVQASTALRPSRGLLTDFQNPHLQQALNLRMSQLRNQNPSNNVRPSLPFSRAMSQVGGGYSGPSYAAVTPNSQNARMMVASQRAELMRQSSAMSLQNQTFRSAHSLQTTPDGLRMPTAGELRNVGGMSQSVTPAAGLVEPSSEQNWQPSGRMRGSLSGRAFSDAHGHLIIHPTQPVQSARPPSNSTPTQPSAPSTQALGPNGLDTLVPRTR 714
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 8563141 8572134 + CmoCh02G014560.1 Cmo02g01456 377053

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo02g01456 714 MobiDBLite consensus disorder prediction 626 655 - -
Cmo02g01456 714 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 168 231 IPR013083 -
Cmo02g01456 714 MobiDBLite consensus disorder prediction 610 662 - -
Cmo02g01456 714 ProSiteProfiles Zinc finger SP-RING-type profile. 193 298 IPR004181 GO:0008270
Cmo02g01456 714 PANTHER ZINC FINGER MIZ DOMAIN-CONTAINING PROTEIN 20 228 - -
Cmo02g01456 714 MobiDBLite consensus disorder prediction 390 482 - -
Cmo02g01456 714 PANTHER E4 SUMO-PROTEIN LIGASE PIAL2-LIKE 228 568 - -
Cmo02g01456 714 MobiDBLite consensus disorder prediction 390 462 - -
Cmo02g01456 714 MobiDBLite consensus disorder prediction 679 704 - -
Cmo02g01456 714 PANTHER E4 SUMO-PROTEIN LIGASE PIAL2-LIKE 20 228 - -
Cmo02g01456 714 PANTHER ZINC FINGER MIZ DOMAIN-CONTAINING PROTEIN 228 568 - -
Cmo02g01456 714 MobiDBLite consensus disorder prediction 675 714 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo02g01456 K04706 PIAS1; E3 SUMO-protein ligase PIAS1 [EC:2.3.2.-] - csv:101213115 910.983
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo02g01456 Cmo15g01319 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo02g01456 Cmo-Chr2:8563141 Cmo15g01319 Cmo-Chr15:9049528 0 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g49 . Blo03g00224 . . . Bpe07g00096 . . . . Cma02g01422 . Car02g01191 Car15g01131 . . Cpe05g00363 . . . . . . . . . . . . . . Cone8ag0274 Cone12ag0281 . Cone9ag0814 . Csa05g00237 Chy09g01264 . . . . . . . . Bma12g00067 . Cmo02g01456 Cmo15g01319 . . . . . Cpe13g00131 Bhi12g00325 . . Lac11g2043 Hepe06g1509 . Lcy12g1608 . . . . . . . Lsi09g00214 . . Cme09g01803
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003920 0 3 1 1 1 1 2 1 1 1 1 1 2 1 1 3 1 3 2 1 1 1 1 1 1 2 1 2 1 3 42
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo02g01456 Cmo_Chr02 FPKM 36.690121 37.84333 15.906213 16.948656 28.009743 29.551207 28.696112 35.991482 34.967396 37.455769