Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo02g01460 ATGGGGTCTATGCTCGGTGACTTGCCGTCATATGATCCTCACAACTTCAGCCAACTCCGACCCTCCGATCCTTCAACTCCTTCTAAGATGATTCCAGCAACCTATCATCCTACCCACAGCAGGACCCTTCCACCACTGGATCAGGTTATAAATACTGAGCCAAAAAATATACTTCTACGACACATTTATCAGCATACAGAACAAAAGTCAAGAACAAAGAGACCTGCAGTCGAGCATCCGATGCCCGAGCACGGAAGCAAGCAACCAAGAGCATCTACTGCCAACACTTCAAATTGA 297 46.8 MGSMLGDLPSYDPHNFSQLRPSDPSTPSKMIPATYHPTHSRTLPPLDQVINTEPKNILLRHIYQHTEQKSRTKRPAVEHPMPEHGSKQPRASTANTSN 98
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 8586242 8588709 + CmoCh02G014600.1 Cmo02g01460 377057

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo02g01460 98 MobiDBLite consensus disorder prediction 64 85 - -
Cmo02g01460 98 Pfam Det1 complexing ubiquitin ligase 3 67 IPR018276 -
Cmo02g01460 98 MobiDBLite consensus disorder prediction 1 47 - -
Cmo02g01460 98 MobiDBLite consensus disorder prediction 15 35 - -
Cmo02g01460 98 PANTHER DET1- AND DDB1-ASSOCIATED PROTEIN 1 1 95 IPR033575 GO:0032434
Cmo02g01460 98 MobiDBLite consensus disorder prediction 64 98 - -
Cmo02g01460 98 PANTHER DET1- AND DDB1-ASSOCIATED PROTEIN 1 1 95 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo02g01460 K11792 DDA1; DET1- and DDB1-associated protein 1 - csv:101213287 197.978
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo02g01460 Cmo15g01318 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo15g01318 Cmo-Chr15:9044682 Cmo02g01460 Cmo-Chr2:8586242 1.36E-58 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g42 . . . . . . . . . . Cma02g01426 Cma15g01253 . Car15g01130 . . Cpe05g00360 . . . . . . . . . . . . . . Cone8ag0277 Cone12ag0284 . . . Csa05g00241 Chy09g01261 . . . . . . Bpe11g00670 . . . Cmo02g01460 Cmo15g01318 . . . . . Cpe13g00132 Bhi12g00316 . . . . . . Cla01g00228 Cam01g0235 Cec01g0226 Cco01g0238 Clacu01g0230 Cmu01g0223 Cre09g2286 Lsi09g00218 . . Cme09g01799
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011522 0 6 1 3 1 0 1 0 0 0 0 0 1 1 1 2 0 2 2 0 1 1 1 1 1 0 1 2 1 1 31
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo02g01460 Cmo_Chr02 FPKM 27.677576 25.927443 16.493183 15.456038 12.19001 13.995183 14.411852 16.75947 17.941788 16.334253