Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo02g01469 ATGGGCTTCCCTGCAAGCTACACTGAGCTGCTTCTCCCGAAGCTCTTCATCCACGTACTCTCCTTACTCGGCTTCCTCAGGAAGCTCATCTCCCTCTTATTTTGCCTTCTAGGGCTCCAGGATTTTCTCGAACCGGACATTCCTTGGTCTAATCATTCTGATTCTTTTCCGACGGGACCATTGACGGACCTCGATCCTCTTTCCGCTGCTGTTCTCCGTGAGATTCTTCCTGTCGTCAGATTCTCTGAACTTCTGGATCCGCCGGAGAGCTGCGCTGTTTGTCTCTACGAGTTCGAGACCGACGACGAGATCCGCCGCCTCGCGAACTGTCGCCACATCTTCCACCGCGGATGCCTCGATCGGTGGATCGGTTATGGTCAGAGGACCTGCCCGCTGTGCCGGACGGTGTTCATTCCGCCCGATTTGCGGACTGGTGGTTGTAATTTTGACGATAGGGCTTGGGAGGATTCGGAACTCTTCGAAGCACTCCACACTGATTCTTCTTCATCCTCGACGCTTCTCAGCGCTGGTTTGTAG 537 54.38 MGFPASYTELLLPKLFIHVLSLLGFLRKLISLLFCLLGLQDFLEPDIPWSNHSDSFPTGPLTDLDPLSAAVLREILPVVRFSELLDPPESCAVCLYEFETDDEIRRLANCRHIFHRGCLDRWIGYGQRTCPLCRTVFIPPDLRTGGCNFDDRAWEDSELFEALHTDSSSSSTLLSAGL 178
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 8623104 8623640 + CmoCh02G014690.1 Cmo02g01469 377066
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo02g01469 178 CDD RING-H2 91 134 - -
Cmo02g01469 178 ProSiteProfiles Zinc finger RING-type profile. 91 134 IPR001841 -
Cmo02g01469 178 PANTHER RING ZINC FINGER PROTEIN-RELATED 1 143 - -
Cmo02g01469 178 PANTHER - 1 143 - -
Cmo02g01469 178 SMART ring_2 91 133 IPR001841 -
Cmo02g01469 178 Pfam Ring finger domain 90 134 IPR001841 -
Cmo02g01469 178 SUPERFAMILY RING/U-box 72 140 - -
Cmo02g01469 178 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 85 137 IPR013083 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo02g01469 Cmo-Chr2:8623104 Cmo14g02114 Cmo-Chr14:15301521 1.05E-38 dispersed
Cmo15g01308 Cmo-Chr15:8984568 Cmo02g01469 Cmo-Chr2:8623104 2.90E-109 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo02g01469 K16281 - csv:101215533 304.679