Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmo02g01469 | ATGGGCTTCCCTGCAAGCTACACTGAGCTGCTTCTCCCGAAGCTCTTCATCCACGTACTCTCCTTACTCGGCTTCCTCAGGAAGCTCATCTCCCTCTTATTTTGCCTTCTAGGGCTCCAGGATTTTCTCGAACCGGACATTCCTTGGTCTAATCATTCTGATTCTTTTCCGACGGGACCATTGACGGACCTCGATCCTCTTTCCGCTGCTGTTCTCCGTGAGATTCTTCCTGTCGTCAGATTCTCTGAACTTCTGGATCCGCCGGAGAGCTGCGCTGTTTGTCTCTACGAGTTCGAGACCGACGACGAGATCCGCCGCCTCGCGAACTGTCGCCACATCTTCCACCGCGGATGCCTCGATCGGTGGATCGGTTATGGTCAGAGGACCTGCCCGCTGTGCCGGACGGTGTTCATTCCGCCCGATTTGCGGACTGGTGGTTGTAATTTTGACGATAGGGCTTGGGAGGATTCGGAACTCTTCGAAGCACTCCACACTGATTCTTCTTCATCCTCGACGCTTCTCAGCGCTGGTTTGTAG | 537 | 54.38 | MGFPASYTELLLPKLFIHVLSLLGFLRKLISLLFCLLGLQDFLEPDIPWSNHSDSFPTGPLTDLDPLSAAVLREILPVVRFSELLDPPESCAVCLYEFETDDEIRRLANCRHIFHRGCLDRWIGYGQRTCPLCRTVFIPPDLRTGGCNFDDRAWEDSELFEALHTDSSSSSTLLSAGL | 178 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
2 | 8623104 | 8623640 | + | CmoCh02G014690.1 | Cmo02g01469 | 377066 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmo02g01469 | 178 | CDD | RING-H2 | 91 | 134 | - | - | |
Cmo02g01469 | 178 | ProSiteProfiles | Zinc finger RING-type profile. | 91 | 134 | IPR001841 | - | |
Cmo02g01469 | 178 | PANTHER | RING ZINC FINGER PROTEIN-RELATED | 1 | 143 | - | - | |
Cmo02g01469 | 178 | PANTHER | - | 1 | 143 | - | - | |
Cmo02g01469 | 178 | SMART | ring_2 | 91 | 133 | IPR001841 | - | |
Cmo02g01469 | 178 | Pfam | Ring finger domain | 90 | 134 | IPR001841 | - | |
Cmo02g01469 | 178 | SUPERFAMILY | RING/U-box | 72 | 140 | - | - | |
Cmo02g01469 | 178 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 85 | 137 | IPR013083 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmo02g01469 | Cmo-Chr2:8623104 | Cmo14g02114 | Cmo-Chr14:15301521 | 1.05E-38 | dispersed | |
Cmo15g01308 | Cmo-Chr15:8984568 | Cmo02g01469 | Cmo-Chr2:8623104 | 2.90E-109 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmo02g01469 | K16281 | - | csv:101215533 | 304.679 |