Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo02g01472 ATGGGAGGTTGCTGCTGTTGTTCCTCAAGAGGAACAGAATCAAATATTACACCAGGCTACTATTATTACCCAAGAGCATCGGAGGAGCATGTTCCCTTGTCATCTCCACTTAGTGCTACCCCAGCATTTCCAACGGGGATTTTGGTTGATACAAATCTGGACACATCAATTCCGGACACTTATAGATCACCCCCTTTGCCTATCCCATATGATGTTGTTTTAACACACCCACATACTCCTCCTGCGGCTCAAGAAATTGTCAGCAATAAGAATGAAGCTACCGCTCAGACTCCAAATACTGATGTAATTCAAGAAACAGCATGCATAAACACACGGGAAACTTCAGCCAAATGTGATGCCATCGATGAATCAGACTGCAAGAAACACACGTTAAAGGAATCTGAAATTGGACTCTCAAAGGGTGTAGAATCTGTGGTCATACCTGTGGAAGAGGAGGATGTTTGTCCCATCTGTTTGGAAGAATATGATGGGGAGAATCCAAAACTCACGACAAAATGCGAGCATCATTTTCATCTTGCATGCATTCTGGAATGGATGGAAAGAAGTGATATCTGCCCTGTGTGTGATCAGGAAATGGTTTTTAGCCCTCCAATTGATTAG 621 43.16 MGGCCCCSSRGTESNITPGYYYYPRASEEHVPLSSPLSATPAFPTGILVDTNLDTSIPDTYRSPPLPIPYDVVLTHPHTPPAAQEIVSNKNEATAQTPNTDVIQETACINTRETSAKCDAIDESDCKKHTLKESEIGLSKGVESVVIPVEEEDVCPICLEEYDGENPKLTTKCEHHFHLACILEWMERSDICPVCDQEMVFSPPID 206
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 8638743 8643687 + CmoCh02G014720.1 Cmo02g01472 377069
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo02g01472 206 SMART ring_2 155 195 IPR001841 -
Cmo02g01472 206 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 149 202 IPR013083 -
Cmo02g01472 206 Pfam Ring finger domain 154 195 IPR001841 -
Cmo02g01472 206 SUPERFAMILY RING/U-box 149 202 - -
Cmo02g01472 206 PANTHER ZINC FINGER, RING/FYVE/PHD-TYPE 1 206 - -
Cmo02g01472 206 PANTHER ANAPHASE-PROMOTING COMPLEX SUBUNIT 11 RING-H2 FINGER PROTEIN 1 206 - -
Cmo02g01472 206 ProSiteProfiles Zinc finger RING-type profile. 155 196 IPR001841 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo02g01472 Cmo15g01303 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo02g01472 Cmo-Chr2:8638743 Cmo15g00232 Cmo-Chr15:1153897 9.36E-29 dispersed
Cmo14g02111 Cmo-Chr14:15284957 Cmo02g01472 Cmo-Chr2:8638743 5.55E-44 transposed
Cmo15g01303 Cmo-Chr15:8944516 Cmo02g01472 Cmo-Chr2:8638743 2.03E-131 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo02g01472 - - cmos:111435815 386.341