Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo02g01477 ATGTTCCGATTGGGTTTACCATGCAACAACGCGGGATTGGAAAGGAATAACCTCTTGTGTTTGATCTTTTCTGCTCCGGGGGCTAAGCAAGTTATTAGGAAGCTGATTTGTTTAGTTGCAACAGAAGCTTTGCAAGAAAAGTCTGAAGAAAACAAAATGGATGCACCTAAAGAGATATTTTTGAAAGATTACAAGATGCCTGATTACTATTTCGACACGGTGGATTTGAAATTTTTGTTGGGTGAGGAGAAGACAATCGTCAGTTCAAGAATAACAGTCTTCCCTAGCGTTGAAGGATCCAGATTTCCTCTTGTTTTGGATGGGGTTGATATGAAGTTGATTTCGATTAAGGTTAACAGCGAGGACCTCGAGGAGGCAGATTACGTTCTGGACTCCCGCCATTTGACGATCCTATCACCGCCAACTGGTTCTTTTACCTTGGAAATTGTTAATGAGATATGTCCTCAGAACAACACTTCTTTAGAGGGACTCTATAAATCAACTGGAAATTTCTCCACACAATGTGAAGCTGAGGGTTTTCGAAAGATCACATTTTACCAGGACCGTCCTGATATAATGGCGAAGTACACATGTCGCATAGAAGCCGATAAGTCATTATACCCGGTGCTACTGTCTAATGGGAATCTTATAGATCAGGGTGATCTAGAGGATGGAAAACATTTTGCCCTCTGGGAGGATCCCTTTAAGAAACCTTGCTACTTGTTTGCTTTAGTAGCTGGCAAGTTTGTAAGCAGAGACGATGTTTTTATTACTCGTTCAGGTAGGAAAATCTCCTTGAAGATATGGACCCCGGCTGAAGACGTACCCAAGACTGAGCATGCCATGTATTCTTTGAAGGCAGCTATGAAATGGGATGAAGATGTTTTTGGACTAGAATATGATCTCGATCTCTTCAATGTTGTGGCCGTTCCAGATTTCAACATGGGAGCCATGGAAAACAAGAGTTTGAATATTTTCAATTCACAACTTGTCTTGGCATCTCCAGAAACTGCTTCTGATTCCGACTATGCTGCCATATTAGGAGTGATTGGCCATGAGTATTTCCACAACTGGACTGGCAACAGGGTGACATGCCGTGATTGGTTCCAGCTGAGCCTGAAGGAAGGTCTTACGGTGTTCCGTGATCAGGAATTTTCATCCGACATGGGAAGTCGTGCTGTAAAGCGAATTTCTGACGTTTCAAAACTCAGAAACTATCAGTTTCCACAGGATGCTGGTCCCATGGCTCATCCTGTTCGACCACATTCCTATATCAAGATGGACAATTTTTACACAGGAAAGTGTTGTTCTCTATGGGTCTATGAAAAGGGTGCTGAAGTCGTGAGGATGTACAAGACCTTATTGGGAAGTCAAGGATTTAGAAAAGGCATGGATCTTTACTTCAAGAGGCATGATGGCCAAGCTGTTACCTGTGAAGATTTCTATGCCGCAATGCGGGATGCGAATAATGCCGATTTTGCTAACTTCTTACTATGGTACTCTCAAGCTGGGACCCCTCGAGTCAAAGTTACATTATCTTACAATTCCGATGGTCGTACTTTTACTCTGAAGTTCAGCCAAGATGTCCCACCAACTCCTGGGCAGCCAAATAAAGAGCCAATGTTTATACCTGTTGCTGTTGGTCTGCTAGACAAAGCCGGCAACGATTTGCCTCTGTCCTCTATATATCATGATGGGGTGTTGCAATCTATAGCTGAAAATGATCGGCCAGTCTACCACACAGTCCTCAGGCTGACCAAGAAAGAAGAAGAGATCGTCTTCTCTGACATACCTGAGCGACCAGTTCCATCTTTGTTTAGGGGCTACAGTGCTCCTATCCGTCTTGAAACAGATCTAAATGACGATGATCTATTTTTCCTTCTTGCCCATGATTCTGATGAGTTCAACCGTTGGGAGGCTGGACAAGTGTTGGCACGGAAACTGATGCTCCAATTGGTGGCCGATCACCAACTAAATAAACCATTGGTTCTTAATTCGAAGTTTGTGGAGGGTCTGAGATCCATACTTTCTGACTCGAGCTTGGATAAAGAATTCATTGCGAAAGCTATAACTCTCCCCGGTGCAGGAGAAATAATGGACATGATGGCGGTGGCAGATCCCGATGCTGTTCATGCCGTTCGAACTTTCATCAGGAAGCAACTGGCCAATGCATTGAAAGCAGAGCTTCTCACTGCAGTAGAAAACAACAGGAGTTCAGAAGCATATGTGTTCAACCATCCTGAAATGGCGAGGCGTGCTTTGAAGAACATTTCTCTTGCATATCTTGCATTAGTTGAGGATACAGAGATTGCCAATCTTGTGCTTGATGAGTATAAGAACGCCTCGAATATGACCGACCAATTTGCAGCTTTGGTGGCTCTAGACCAGAAGCCAGGTGAAACTCGTGACGAGGTTCTCGCCGACTTCTACACCAAGTGGCAGCACGACTATTTGGTTGTCAACAAATGGTTTGCTCTTCAAGCCATGTCAGACATTCCTGGCAATCTTGTGAATGTTCAAAACCTCCTTAATCATCCAGCATTCGACATTCGAAATCCAAACAACGTATATTCTTTGATTGGAGGTTTCTGTGGATCCATAGTCAACTTGCACGCGAAGGACGGTTCTGGCTATAAATTCTTGGGAGAAGCTGTCATGCAACTAGATAAAATTAATCCCCAGGTGGCCTCTGGAATGGTCTCTGTCTTCACGAAATGGAAGCGTTACGACAAACACCGACAAAAGCTTGCCAAGGAACAACTGGAGAAGATACTGTCTGTGAATGGACTGTCTGAAAATGTGTTTGAAATTGCATCAAAAAGCTTAGCAGCAGCTTGA 2838 43.73 MFRLGLPCNNAGLERNNLLCLIFSAPGAKQVIRKLICLVATEALQEKSEENKMDAPKEIFLKDYKMPDYYFDTVDLKFLLGEEKTIVSSRITVFPSVEGSRFPLVLDGVDMKLISIKVNSEDLEEADYVLDSRHLTILSPPTGSFTLEIVNEICPQNNTSLEGLYKSTGNFSTQCEAEGFRKITFYQDRPDIMAKYTCRIEADKSLYPVLLSNGNLIDQGDLEDGKHFALWEDPFKKPCYLFALVAGKFVSRDDVFITRSGRKISLKIWTPAEDVPKTEHAMYSLKAAMKWDEDVFGLEYDLDLFNVVAVPDFNMGAMENKSLNIFNSQLVLASPETASDSDYAAILGVIGHEYFHNWTGNRVTCRDWFQLSLKEGLTVFRDQEFSSDMGSRAVKRISDVSKLRNYQFPQDAGPMAHPVRPHSYIKMDNFYTGKCCSLWVYEKGAEVVRMYKTLLGSQGFRKGMDLYFKRHDGQAVTCEDFYAAMRDANNADFANFLLWYSQAGTPRVKVTLSYNSDGRTFTLKFSQDVPPTPGQPNKEPMFIPVAVGLLDKAGNDLPLSSIYHDGVLQSIAENDRPVYHTVLRLTKKEEEIVFSDIPERPVPSLFRGYSAPIRLETDLNDDDLFFLLAHDSDEFNRWEAGQVLARKLMLQLVADHQLNKPLVLNSKFVEGLRSILSDSSLDKEFIAKAITLPGAGEIMDMMAVADPDAVHAVRTFIRKQLANALKAELLTAVENNRSSEAYVFNHPEMARRALKNISLAYLALVEDTEIANLVLDEYKNASNMTDQFAALVALDQKPGETRDEVLADFYTKWQHDYLVVNKWFALQAMSDIPGNLVNVQNLLNHPAFDIRNPNNVYSLIGGFCGSIVNLHAKDGSGYKFLGEAVMQLDKINPQVASGMVSVFTKWKRYDKHRQKLAKEQLEKILSVNGLSENVFEIASKSLAAA 945
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 8653951 8660380 + CmoCh02G014770.1 Cmo02g01477 377074

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo02g01477 945 Gene3D Neutral Protease Domain 2 335 503 IPR027268 -
Cmo02g01477 945 Gene3D - 251 334 - -
Cmo02g01477 945 SUPERFAMILY Leukotriene A4 hydrolase N-terminal domain 58 247 IPR042097 -
Cmo02g01477 945 Gene3D - 620 943 IPR037144 -
Cmo02g01477 945 TIGRFAM pepN_proteo: aminopeptidase N 63 942 IPR012779 GO:0008270
Cmo02g01477 945 PANTHER - 18 944 IPR012779 GO:0008270
Cmo02g01477 945 PRINTS Membrane alanyl dipeptidase (M1) family signature 368 380 IPR001930 GO:0006508
Cmo02g01477 945 PRINTS Membrane alanyl dipeptidase (M1) family signature 349 364 IPR001930 GO:0006508
Cmo02g01477 945 PRINTS Membrane alanyl dipeptidase (M1) family signature 231 246 IPR001930 GO:0006508
Cmo02g01477 945 PRINTS Membrane alanyl dipeptidase (M1) family signature 313 323 IPR001930 GO:0006508
Cmo02g01477 945 Pfam Peptidase family M1 domain 283 496 IPR014782 GO:0008237|GO:0008270
Cmo02g01477 945 Pfam Domain of unknown function (DUF3458) Ig-like fold 504 618 IPR035414 -
Cmo02g01477 945 Pfam Domain of unknown function (DUF3458_C) ARM repeats 621 943 IPR024601 -
Cmo02g01477 945 SUPERFAMILY Metalloproteases ("zincins"), catalytic domain 259 510 - -
Cmo02g01477 945 Pfam Peptidase M1 N-terminal domain 84 241 IPR045357 -
Cmo02g01477 945 PANTHER BNAC06G01820D PROTEIN 18 944 - -
Cmo02g01477 945 Gene3D tricorn interacting facor f3 domain 66 249 IPR042097 -
Cmo02g01477 945 CDD M1_APN 63 501 - -
Cmo02g01477 945 Gene3D - 504 617 IPR038438 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo02g01477 K01256 pepN; aminopeptidase N [EC:3.4.11.2] - jre:109014484 1530.38
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo02g01477 Cmo15g01300 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo02g01477 Cmo-Chr2:8653951 Cmo04g02727 Cmo-Chr4:19768355 1.17E-09 dispersed
Cmo01g01794 Cmo-Chr1:13224156 Cmo02g01477 Cmo-Chr2:8653951 2.41E-24 transposed
Cmo14g01291 Cmo-Chr14:10799290 Cmo02g01477 Cmo-Chr2:8653951 6.27E-26 transposed
Cmo15g01300 Cmo-Chr15:8921812 Cmo02g01477 Cmo-Chr2:8653951 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g302 . . . . . . Bma07g01666 . . . Cma02g01441 . Car02g01208 . . . Cpe05g00346 . . . . . . . . . . . . . . Cone8ag0292 Cone12ag0298 . . . Csa05g00269 Chy09g01240 . . . . Bda09g00031 . . . . . Cmo02g01477 Cmo15g01300 . . . . . Cpe13g00149 Bhi12g00279 . . Lac11g2075 Hepe06g1533 . Lcy12g1636 Cla01g00252 Cam01g0258 Cec01g0250 Cco01g0263 Clacu01g0256 Cmu01g0245 Cre09g2264 Lsi09g00243 . . Cme09g01774
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004484 2 1 1 2 1 1 2 1 1 1 1 1 2 1 1 2 1 3 2 1 2 1 2 1 1 1 1 2 1 2 42
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo02g01477 Cmo_Chr02 FPKM 14.408191 18.073143 11.873167 11.540169 5.014821 6.21349 4.510063 77.857376 80.496658 78.286018