Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo02g01479 ATGGATTTACAGAAGCATTTTCATGGTGGGTTTTCCTTATTCTCTCTGGTTTTGCTGCTGATTTTTCCTTCTTACGTGTTGGGTGGGGATATTGTTCATCATGACGATTTGTCTCCCAAAAAGCCTGGCTGTGAGAACGACTTCATTCTGGTTAAAGTTCAAACTTGGATCGATGGCATAGAAGCCAGTGAATTTGTGGGTGTTGGAGCTAGATTTGGTGCTACCATCGTTTCAAAGGAGAAAAATGCAAACCAAACACGCCTTGTTCTTGCAAATCCCCGTGATTGTTGCAGTGTGCCAAAGGACAAGCTTTCTGGAGATATAATCATGGTTGATCGAGGTCACTGCAAATTTACTACAAAAGCAAATATTGCTGAAGCTGCTGGTGCTTCAGCTATACTGATAGTTAATAACCAAAAGGACCTTTACAAGATGGTTTGTGATCCTGATGAGACTGATCTAGATATACATATACCTGCTGTCATGCTCCCTCACGATGCTGGTACAAGCTTGGAGAAGATGCTAATCAGTAATTCTTCAGTGTCTGTTCAGCTATACTCACCACAACGACCACCAGTTGACATAGCTGAAGTATTCTTATGGTTGATGGCTGTCGGTACAATCTTGTGTTCATCATTTTGGTCTGCCTGGAGTGCTAGAGAAGCAGCTATTGAGCAGGACAAGCTACTAAAGGATGGTGCAGATGATATTCAAAATGCTGATGAAATGGACAGCCCTGGTGTTGTATATATCAACATGGCATCGGCAGTCCTGTTTGTCATCGTTGCGTCGTGCTTTTTGATTTTGCTTTACAAACTCATGTCGTACTGGTTCATCGAGCTTTTAGTAGTCCTTTTCTGCATAGGAGGCGCAGAGGGCTTGCAAACTTGTTTGGTTGCGGTATTGTCGAGATGCTTTAAGGAAATTGGAGAACCATACATCAAAGTGCCATTCTTTGGAGCTGTTTCATACCTCAGTATGGCGGTTTCTCCATTCTGCGTAGCATTTGCTGTCGTTTGGGCTATCTATCGGAGTGCGCCGTTTGCCTGGATTGGTCAAGACATACTTGGAATTGCACTGATAATTACAGTTCTTCAAATAGTTCGTATACCGAATCTCAAGGTTGGAACAGTGCTTCTCAGTTGTGCCTTCCTCTATGATATCTTTTGGGTCTTTGTTTCTAAGAAGTTGTTCAAGGAAAGTGTGATGATTGTGGTAGCTCGTGGCGACAAAAGCGGAGAGGACGGCATCCCGATGCTGCTAAAGATCCCACGCATGTTCGATCCGTGGGGTGGTTATAGCATCATTGGATTTGGTGACATTCTTTTACCTGGACTTATAGTAGCGTTTTCTCTCAGGCATGACTGGTTGGCTAATAAGACCCTCCGGGCTGGTTACTTCTTACCAGCAATGCTTGCTTATGGATCAGGTCTTCTGATTACCTATGTAGCTTTGAACCTGATGGACGGCCACGGCCAGCCCGCCCTGCTTTATATCGTCCCGTTTACTCTCGGAACCCTTTTGATACTGGGGAAGAAGAGAGGAGATTTGGGGATTTTATGGAGAAAAGGAGAACCAGAAAGGGTGTTGTATGCAACCTATCCCTTCCATTGGAGCCCTTTGAGAGAACAGAAGCCTCACACAGTCTCACAGCTCACTCCCAAAAGAAGAACAAAAATGGAGGGCAAAGAAGAGGACGTCAAGCTCGGAGCCAACAAGTACTCTGAAAGACAACCCATCGGCACATCGGCGCAGACGGACAAGGACTACAAAGAACCGCCACCGGCGCCGCTCTTCGAGCCCGGCGAGCTCTCGTCATGGTCCTTCTACAGAGCCGGAATCGCCGAGTTCGTAGCCACTTTCTTGTTCCTCTATATCACCATTTTGACGGTGATGGGAGTCAGCCGAGCTCCTACCAAGTGCTCCACCGTCGGCATTCAGGGCATTGCTTGGGCCTTCGGCGGCATGATCTTTGCTCTTGTTTACTGCACCGCTGGAATCTCCGGTGGGCACATTAATCCGGCGGTCACGTTCGGGCTTTTCTTGGCGAGGAAGCTGTCGCTCACCAGAGCCATATTCTACATCATCATGCAGTGTCTAGGTGCCATCTGCGGTGCCGGCGTCGTGAAGGGCTTCGAGAAGTCCATCTACGTGCAGAAGCTCGGCGGTGCCAACTTCGTGGCCTCTGGCTACACCAAGGGCAGTGGCCTTGGCGCTGAGATCATTGGCACCTTCGTTCTCGTCTACACTGTCTTCTCCGCCACCGATGCCAAGAGAAATGCCAGAGACTCTCACGTCCCTATTTTGGCTCCTCTTCCCATTGGGTTTGCTGTGTTTTTGGTTCATTTGGCGACCATTCCCATCACCGGCACCGGCATCAACCCAGCCCGGAGTCTGGGTGCTGCCATCATCTACAACAGGCAGCACGCTTGGGATGACCATGTTATGGATCTTCTGGGTGGGGCCTTTCATCGGAGCTGCTCTTGCTGCTATTTACCACCAGATCATAATCAGAGCCATTCCATTCAAGGCCAGAGCTTGAAGACTCTACTACTTCCACTGGAACAGACAGGTCTAGTTGAAATCGAAATGTGTTCCTTTTCTATTCGCTCTTTTGTTTGCTTATTTGGTCCTTCAGGACGACGACTGACATGA 2655 47.87 MDLQKHFHGGFSLFSLVLLLIFPSYVLGGDIVHHDDLSPKKPGCENDFILVKVQTWIDGIEASEFVGVGARFGATIVSKEKNANQTRLVLANPRDCCSVPKDKLSGDIIMVDRGHCKFTTKANIAEAAGASAILIVNNQKDLYKMVCDPDETDLDIHIPAVMLPHDAGTSLEKMLISNSSVSVQLYSPQRPPVDIAEVFLWLMAVGTILCSSFWSAWSAREAAIEQDKLLKDGADDIQNADEMDSPGVVYINMASAVLFVIVASCFLILLYKLMSYWFIELLVVLFCIGGAEGLQTCLVAVLSRCFKEIGEPYIKVPFFGAVSYLSMAVSPFCVAFAVVWAIYRSAPFAWIGQDILGIALIITVLQIVRIPNLKVGTVLLSCAFLYDIFWVFVSKKLFKESVMIVVARGDKSGEDGIPMLLKIPRMFDPWGGYSIIGFGDILLPGLIVAFSLRHDWLANKTLRAGYFLPAMLAYGSGLLITYVALNLMDGHGQPALLYIVPFTLGTLLILGKKRGDLGILWRKGEPERVLYATYPFHWSPLREQKPHTVSQLTPKRRTKMEGKEEDVKLGANKYSERQPIGTSAQTDKDYKEPPPAPLFEPGELSSWSFYRAGIAEFVATFLFLYITILTVMGVSRAPTKCSTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRAIFYIIMQCLGAICGAGVVKGFEKSIYVQKLGGANFVASGYTKGSGLGAEIIGTFVLVYTVFSATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYNRQHAWDDHVMDLLGGAFHRSCSCCYLPPDHNQSHSIQGQSLKTLLLPLEQTGLVEIEMCSFSIRSFVCLFGPSGRRLT 884
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 8662590 8669969 - CmoCh02G014790.1 Cmo02g01479 377076
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo02g01479 884 SMART psh_8 247 514 IPR006639 GO:0004190|GO:0016021
Cmo02g01479 884 CDD MIP 611 823 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cmo02g01479 884 Gene3D - 57 190 - -
Cmo02g01479 884 Gene3D Glycerol uptake facilitator protein. 596 829 IPR023271 -
Cmo02g01479 884 TIGRFAM MIP: MIP family channel proteins 615 816 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cmo02g01479 884 SUPERFAMILY PA domain 95 146 IPR046450 -
Cmo02g01479 884 PRINTS Major intrinsic protein family signature 690 709 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cmo02g01479 884 PRINTS Major intrinsic protein family signature 653 677 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cmo02g01479 884 PRINTS Major intrinsic protein family signature 775 797 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cmo02g01479 884 PRINTS Major intrinsic protein family signature 611 630 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cmo02g01479 884 PRINTS Major intrinsic protein family signature 739 757 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cmo02g01479 884 Pfam Signal peptide peptidase 249 525 IPR007369 GO:0004190|GO:0016021
Cmo02g01479 884 SUPERFAMILY Aquaporin-like 604 815 IPR023271 -
Cmo02g01479 884 ProSitePatterns MIP family signature. 671 679 IPR022357 -
Cmo02g01479 884 Pfam Major intrinsic protein 603 820 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cmo02g01479 884 Pfam PA domain 89 171 IPR003137 -
Cmo02g01479 884 PANTHER SIGNAL PEPTIDE PEPTIDASE-LIKE 2 12 529 - -
Cmo02g01479 884 PANTHER SIGNAL PEPTIDE PEPTIDASE 12 529 IPR007369 GO:0004190|GO:0016021
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo02g01479 Cmo15g01297 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo02g01479 Cmo-Chr2:8662590 Cmo08g00877 Cmo-Chr8:5663352 0 dispersed
Cmo06g00230 Cmo-Chr6:1232789 Cmo02g01479 Cmo-Chr2:8662590 4.95E-60 dispersed
Cmo08g00103 Cmo-Chr8:541255 Cmo02g01479 Cmo-Chr2:8662590 1.51E-118 dispersed
Cmo08g00104 Cmo-Chr8:549449 Cmo02g01479 Cmo-Chr2:8662590 2.72E-31 dispersed
Cmo17g00413 Cmo-Chr17:2749741 Cmo02g01479 Cmo-Chr2:8662590 7.75E-137 dispersed
Cmo18g01275 Cmo-Chr18:12384021 Cmo02g01479 Cmo-Chr2:8662590 2.11E-23 dispersed
Cmo15g01298 Cmo-Chr15:8913115 Cmo02g01479 Cmo-Chr2:8662590 6.38E-177 transposed
Cmo15g01297 Cmo-Chr15:8901972 Cmo02g01479 Cmo-Chr2:8662590 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo02g01479 K09597 - csv:101216966 972.615