Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo02g01481 ATGGCTTCAACCTTCACTTTTCTTCAGTTTCCCCTCATTCTATCTCCTCGTCCTAATATTCCATGTCTAAGACCTCAATTTCGCCGCCAATATCTTCCCACCATTCGAATTCTCCGACCCTCAGTAGTTCCTTCCGCCATCGGGCCGGACGGAAAGTTCTATCCGAACCCGGCCGACGACGACCCTCCGGAAGCTCCGGAAGATGCCGGCCATGGAGTTTCGAAGTTTCAACAGATATACCGCCAAGCTGCTCGTGCGAAAAAGATTCAGGAGGAGGATTTCAAGAAGCATCAGTCTACTTATCTGTCGGCCATTGCTGACGTCGAGGATGCTCCCGATAATGCTGAATATTTGAACTCGGAGAGCTCTGGAGATGATTTGTTCGGTGAAATTGACAAAGCTATTGCTATGAAGCGGAAGGAATTCGTGAAGCAGGGACTTCTCAAGCCTAACCCAAAGAAAGAAAAGGCGATTGATAAAGATATTCTTGAGGGCATTGATGAGTTGGAGACCGAGGAGGTCGTGGACTTGGAGGAAATTAACGAGCTCCAGGGGCTTACGGAGATTTCGGAGGACGAGAATGAGGACAAGGACGAGGATGAAGAGGGGCCGGGGAATTTGGATGACGATGCAAGGGAATTACATGGTTCGGATGAACTATCTTCTTTTAATTCTTTTGATGTGGATTTTGATAGCTATGGAAAAGTTAAGACTAGAATTGTGGAACCCAAGTTCAAAATGACTTTAGCTGAGCTCTTGGATGAAAGTAAGGTCGTTCCAGTTTCTGTTTTTGGCAATTTAGAGATAGAAATAACTGGCATTCAACATGACTCAAGAATGGTTAACGCGGGTGACTTGTTTGTATGTTGTGTTGGGAGGGAAACTGATGGGCATTTGTATTTAACTGAGGCGGATAAGAGGGGTGCAGTGGCTGTGGTGGCTAGCAAGGAGATAGATATAGAAGAAACTTTGGGCTGTAAAGCTTTAGTTATGGTGGAGGATACTAATTCAGTTCTTCCTGCATTGGCTGCTTCTTTTTACATGAACCCGTCAAAGAATATGGCTGTGATAGGAGTAACAGGGACAGATGGTAAAACCAGCACTTCCTTCTTGATAAAGGGGATGTATGAGGCAATGGGGTTGAGAACTGGGTTGTTAGGTACAGTGGCCTATTATTTACATGGGGACAATAAGTTGGAGGCGCCAAGTACAACCCCGGATGCTATTTTGGTCCAAAACTTAATGGCGAAGATGCTTCATAATGGAACTGAAGCGGTTGTAATGGAGGTTTCAACCGCTGAACTTGCTCGTGGCAGATGTGATGAAGTTGACTTTGATATAGCGGTTTTCACAAATTTGACTCCGGAGTCAAATTTGGATTTTCAAGGGTCTGAAGAGGAGTATAGGGATGCCAAAGCCAAGCTATTTAGAAGGATGGTGGATCCAGATCGACATCGAAAAGTTGTTAACATTGACGATCCGAATGCACCATTCTTCATAGGTCAAGGAAATCCAGACGTGCCGGTTGTTACCTTTGCCATGGAAAACAAAAATGCTGCTGTCCATCCCCTGAAGTATGAATTGTCACTATTTGAGACACAGGTTTTGGTTCACACTCCCCAGGGCATATTGGAGATATCATCAGGGTTGCTTGGAAAGCATAACATATACAATATTCTTGCAGCAGTGTCAGTAGGGATTGCAGTGGGAGCACCATTAGAGGATATTGTTAGAGGTATTGAAGAGGTTGATGCTGTTCCAGGGAGATTTGAACTGATTGATGAAGAGCAGGCATTTGGTGTAATTGTTGATCATGCTCATACTCCAGATGGCCTGTCCCGACTGCTTGATTCTGTGAGGGAGCTTGGGCCCAGGAGGATTATCACTGTTTTTGGATGCTGTGGCGAGCATGACAGGGGGAAAAGACCCATGATGACAAAGATTGCAACCGATAAAAGTGACATTACAATTCTGACATCTGATAATCCAAGGAATGAAGATCCATTGGACATTTTGGATGATATGTTAGCTGGTATAGGCTGGACTATGCAGGATTACTTGAAGCATGGAGAAAATGATTACTATCCGCCTCTTCCAAATGGTCATAGGATTTTCTTGCATGATATTAGACGTGTGGCTGTACGTGCTGGTGTTGCAATGGGTGAGGAAGGCGACGTGGTTGTGGTTGCTGGCAAGGGCCATGAAACATATCAAATTGAAGGTGATAAAAAAGACTTTTTTGATGATAGAGAAGAATGCAGAGAAGCATTGCAATATGTTGATGAACTTCACCAAGCTGGAATTGACACAAGTGAATTTCCATGGCGGTTACCAGAGAGGCCGTTGCATTTGGTTGGTCAGATTGAGGGAATAATTACTCCATATGTTTTTGCTGTTGCTCTGGTCGTCGGTTGGATAAGCAGCAACGATGCGTGCCCGAGTTGGAGATGGAAGCGAAGAATCCGAATCAGTGCTCGTAATCAACTGTTATCTGTGTGTGTAGGTCGTTAG 2511 44.68 MASTFTFLQFPLILSPRPNIPCLRPQFRRQYLPTIRILRPSVVPSAIGPDGKFYPNPADDDPPEAPEDAGHGVSKFQQIYRQAARAKKIQEEDFKKHQSTYLSAIADVEDAPDNAEYLNSESSGDDLFGEIDKAIAMKRKEFVKQGLLKPNPKKEKAIDKDILEGIDELETEEVVDLEEINELQGLTEISEDENEDKDEDEEGPGNLDDDARELHGSDELSSFNSFDVDFDSYGKVKTRIVEPKFKMTLAELLDESKVVPVSVFGNLEIEITGIQHDSRMVNAGDLFVCCVGRETDGHLYLTEADKRGAVAVVASKEIDIEETLGCKALVMVEDTNSVLPALAASFYMNPSKNMAVIGVTGTDGKTSTSFLIKGMYEAMGLRTGLLGTVAYYLHGDNKLEAPSTTPDAILVQNLMAKMLHNGTEAVVMEVSTAELARGRCDEVDFDIAVFTNLTPESNLDFQGSEEEYRDAKAKLFRRMVDPDRHRKVVNIDDPNAPFFIGQGNPDVPVVTFAMENKNAAVHPLKYELSLFETQVLVHTPQGILEISSGLLGKHNIYNILAAVSVGIAVGAPLEDIVRGIEEVDAVPGRFELIDEEQAFGVIVDHAHTPDGLSRLLDSVRELGPRRIITVFGCCGEHDRGKRPMMTKIATDKSDITILTSDNPRNEDPLDILDDMLAGIGWTMQDYLKHGENDYYPPLPNGHRIFLHDIRRVAVRAGVAMGEEGDVVVVAGKGHETYQIEGDKKDFFDDREECREALQYVDELHQAGIDTSEFPWRLPERPLHLVGQIEGIITPYVFAVALVVGWISSNDACPSWRWKRRIRISARNQLLSVCVGR 836
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 8670506 8675816 - CmoCh02G014810.1 Cmo02g01481 377078

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo02g01481 836 Gene3D - 591 768 IPR036615 GO:0009058|GO:0016881
Cmo02g01481 836 Pfam Mur ligase family, glutamate ligase domain 586 669 IPR004101 GO:0009058|GO:0016881
Cmo02g01481 836 Gene3D - 350 589 IPR036565 GO:0005524|GO:0009058
Cmo02g01481 836 PANTHER UDP-N-ACETYLMURAMOYL-L-ALANYL-D-GLUTAMATE--2,6-DIAMINOPIMELATE LIGASE MURE HOMOLOG, CHLOROPLASTIC 225 771 - -
Cmo02g01481 836 SUPERFAMILY MurD-like peptide ligases, catalytic domain 350 583 IPR036565 GO:0005524|GO:0009058
Cmo02g01481 836 MobiDBLite consensus disorder prediction 180 214 - -
Cmo02g01481 836 Pfam Mur ligase middle domain 359 565 IPR013221 GO:0005524|GO:0009058|GO:0016881
Cmo02g01481 836 TIGRFAM murE: UDP-N-acetylmuramyl-tripeptide synthetase 269 758 IPR005761 GO:0005524|GO:0005737|GO:0008360|GO:0016881|GO:0051301
Cmo02g01481 836 Gene3D - 248 348 - -
Cmo02g01481 836 MobiDBLite consensus disorder prediction 49 72 - -
Cmo02g01481 836 Pfam Mur ligase family, catalytic domain 270 347 IPR000713 GO:0009058|GO:0016881
Cmo02g01481 836 MobiDBLite consensus disorder prediction 180 207 - -
Cmo02g01481 836 Hamap UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [murE]. 247 757 IPR005761 GO:0005524|GO:0005737|GO:0008360|GO:0016881|GO:0051301
Cmo02g01481 836 PANTHER MUR LIGASE FAMILY MEMBER 225 771 - -
Cmo02g01481 836 SUPERFAMILY MurD-like peptide ligases, peptide-binding domain 586 758 IPR036615 GO:0009058|GO:0016881
Cmo02g01481 836 SUPERFAMILY MurE/MurF N-terminal domain 264 347 IPR035911 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo02g01481 - - - cmos:111459690 1524.99
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g313 . . . . . . . Bma14g00701 . . Cma02g01444 . Car02g01212 . . . Cpe05g00342 . . . . . . . . . . . . . . Cone8ag0299 Cone12ag0305 . . . Csa05g00273 Chy09g01235 . Blo03g00340 . Bda07g00481 . . . . . . Cmo02g01481 . . . . . . . Bhi12g00272 . . . Hepe06g1538 . Lcy12g1641 Cla01g00256 Cam01g0262 Cec01g0254 Cco01g0267 Clacu01g0260 Cmu01g0249 Cre09g2260 Lsi09g00249 . . Cme09g01769
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006982 1 3 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 3 2 1 37
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo02g01481 Cmo_Chr02 FPKM 6.54994 5.627211 7.568609 8.922269 9.684196 7.3793 12.090651 9.116873 10.677489 12.436012