Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo02g01486 ATGTGTCAAGGAAACTGTGAAAGATTTGAGAAAATGAACAAACAGAACAAGCCTAGTGTAAGCAATAAGCCATCAATATATTACTGGTGGAGACCAGATGAGAGGATATCATCTGAGCTGGCTGATTTTGTCCTTGAAAATGATACCCCCAACACTGGTTACGCCAAACACGGTAAAGATAGCAGTACTATAAATGAACCAAAGTCTTCTGAGATGTTGAGCACAGCTCAGTTCATTTCAATTTTTGGCCAAGTATTGAATCGTGCTAGTCGTCCTTTTACATTTTTCCAACCGAAGCAGATCTTAAATCAAGAAAATGATGATTGCAATGAGGTTGCGTTCAATAGTGTGGTTGAAGTTAATGGCAAATTAGTTGATATAAGGACCAATGACCAATGTTCTCCTATGGTGCAGTCTACTTTGGGCTTGTCTTGTTTGACAGTAACTCAGAAGATATCTTTGTTTGAACCTTGTAAATATCATTCCATGTCATCATTTTGGAGTCTACTATATGGTGGTAGAGACATGTCAGCTAAATCATGTAAAGGAAAAGGCTTTACTAGTGTACAAATCTTGCACGATATGAGGAAGAGATTTAGATGGATGAACCATATAAGTCATACTGAAGCATCCTACGCCAAGAAAGTTGATAATAATGAACGCATGAAAGCCAATGCATTCAAGGCTAGAGGTGGTCTTAATGAAGCAGGGGGCTGCACGTCAGGAGATTCATGTTTTCTTGTTCATGAGTTTATCAATGAAATTTCAAAGAATGCTCTCATGTCCCAATCAATCAATTTATCATCGCTGTTCGTCCCGAAGTTGGAAATAAAGATGATGGAAAATGTTTATATGGCCTCACGTATCCTTACATTAGTTCAAGATAACAGGGCAGATGGCAGTATTTTAGAGATCCCAGATTCAGTTATTTTGGCAGCTCATTCATTACCTTCCAAGGACAGTGTAGTAGACAATTTAGACAACAGGTGCAAGGCTAATAGCACTGAAGAACAGGAGAATAAAACCAAACAGTCCGACAAGCTCATTGTTGAAAAGGATTACTATAGAGAGGATTGCTCATTGACTCGTGAAAAATCTTGTTACAGTATTGCCAAGCAAGAACATGCCTTTGCGGGGGCATTAGCTGGTGTATTTGTCAGTCTTTGTCTACATCCTGTTGATACTATCAAAACTGTGGTTCAGTCTTATCATGCAGAACAGAAGTCTTTCAGTTACATTGGAAAATCAATTGTCTCTGATCGAGGTTTAAGTGGGCTTTATCGTGGAATCTCCACCAACATCGCGTCTTCAGCTCCGATATCTGCTGTTTACACTTTCACATATGAATCAGTTAAAGGAGCTTTGCTTCCACTTCTCCAAGAGGAGTATCGCTCTATTGTCCATTGTACGGCTGGTGGTTGTGCAAGTATTGCTACATCTTTTATTTTTACCCCAAGTGAGCGTATAAAACAGCAGATGCAAGTTAGTTCACGCTACCATAACTGCTGGAATGCTTTTGTTGGTGTGGTTGCAAATGGTGGATTGCGAGGATTATATACTGGATGGGGAGCTGTTCTTTGCAGAAACGTACCACACTCAATTATCAAGTTCTATACCTATGAAAGTTTGAAAGGATTGATGAAATCTAATGCTCAGCAAACTACTTCACAAACGTTAGTATGTGGAGGGGTAGCTGGATCTACTGCCGCTTTGTTTACCACTCCTTTTGATGTTGTAAAAACGAGATTACAAACACAGATTCCAGGATCTCTGAGCCCATATAAAAGTGTAATTCAAGCGCTCTATGAAATCAGCAAGAAAGAAGGTCTGAAAGGCCTCTATAGGGGGCTGACTCCAAGACTGATGATGTACATGTCTCAAGGTGCAATCTTCTTTTCCTCTTATGAATTTTTGAAGAGAATCTTTTCTCTTGAGGCGCCTCAACATGGGAAGACTCCAACACCGATCAGATGA 1974 39.77 MCQGNCERFEKMNKQNKPSVSNKPSIYYWWRPDERISSELADFVLENDTPNTGYAKHGKDSSTINEPKSSEMLSTAQFISIFGQVLNRASRPFTFFQPKQILNQENDDCNEVAFNSVVEVNGKLVDIRTNDQCSPMVQSTLGLSCLTVTQKISLFEPCKYHSMSSFWSLLYGGRDMSAKSCKGKGFTSVQILHDMRKRFRWMNHISHTEASYAKKVDNNERMKANAFKARGGLNEAGGCTSGDSCFLVHEFINEISKNALMSQSINLSSLFVPKLEIKMMENVYMASRILTLVQDNRADGSILEIPDSVILAAHSLPSKDSVVDNLDNRCKANSTEEQENKTKQSDKLIVEKDYYREDCSLTREKSCYSIAKQEHAFAGALAGVFVSLCLHPVDTIKTVVQSYHAEQKSFSYIGKSIVSDRGLSGLYRGISTNIASSAPISAVYTFTYESVKGALLPLLQEEYRSIVHCTAGGCASIATSFIFTPSERIKQQMQVSSRYHNCWNAFVGVVANGGLRGLYTGWGAVLCRNVPHSIIKFYTYESLKGLMKSNAQQTTSQTLVCGGVAGSTAALFTTPFDVVKTRLQTQIPGSLSPYKSVIQALYEISKKEGLKGLYRGLTPRLMMYMSQGAIFFSSYEFLKRIFSLEAPQHGKTPTPIR 657
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 8702845 8708475 + CmoCh02G014860.1 Cmo02g01486 377083

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo02g01486 657 ProSiteProfiles Solute carrier (Solcar) repeat profile. 370 454 IPR018108 -
Cmo02g01486 657 PANTHER S-ADENOSYLMETHIONINE MITOCHONDRIAL CARRIER PROTEIN 12 650 - -
Cmo02g01486 657 PANTHER MITOCHONDRIAL SUBSTRATE CARRIER FAMILY PROTEIN 12 650 - -
Cmo02g01486 657 ProSiteProfiles Solute carrier (Solcar) repeat profile. 463 546 IPR018108 -
Cmo02g01486 657 SUPERFAMILY Mitochondrial carrier 374 638 IPR023395 -
Cmo02g01486 657 Pfam Mitochondrial carrier protein 465 549 IPR018108 -
Cmo02g01486 657 Pfam Mitochondrial carrier protein 554 643 IPR018108 -
Cmo02g01486 657 Pfam Mitochondrial carrier protein 374 455 IPR018108 -
Cmo02g01486 657 Gene3D Mitochondrial carrier domain 335 462 IPR023395 -
Cmo02g01486 657 Gene3D Mitochondrial carrier domain 463 656 IPR023395 -
Cmo02g01486 657 ProSiteProfiles Solute carrier (Solcar) repeat profile. 553 641 IPR018108 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo02g01486 - - - csv:101216245 1032.71
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo02g01486 Cmo-Chr2:8702845 Cmo04g02550 Cmo-Chr4:18688147 2.23E-37 dispersed
Cmo15g01101 Cmo-Chr15:7382873 Cmo02g01486 Cmo-Chr2:8702845 5.95E-19 dispersed
Cmo02g01486 Cmo-Chr2:8702845 Cmo04g02578 Cmo-Chr4:18860081 1.31E-41 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g321 . . . . . . . . . . Cma02g01450 . Car02g01217 . . . Cpe05g00338 . . . . . . . . . . . . . . Cone8ag0303 . . . . Csa05g00280 Chy09g01229 . . . . . Bpe08g01484 . . . . Cmo02g01486 . . . . . . . Bhi12g00262 . . . . . . Cla01g00261 Cam01g0267 Cec01g0259 Cco01g0274 Clacu01g0266 Cmu01g0255 Cre09g2252 Lsi09g00256 . . Cme09g01764
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006178 1 3 1 1 1 0 1 1 1 1 1 0 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 4 6 1 37
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo02g01486 Cmo_Chr02 FPKM 0.233333 0.217496 1.681116 2.397857 0.0 0.0 0.0 0.476536 0.333483 0.267543