Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo02g01488 ATGGGGAACCGAAGATTTGCGCAGGTTTCTACTAGCGATGAGGAAGATGAAGTGCCGGCAACGAAGCAGCAATTCTCTAATTCAGACGACAACTTGCCAGTTCGGAGGAAGAGGAAGAAGATGAAGTTCATAGAGGAAGAGGAGGAGGAGCTGGAGGAGGAAGGGGAAGAGAGAAATCGCAGGAGTAGAAGGAGTAGAAACAAGGGAGAGAAGGAGGTGGAAGCTTATAAACAGCAGGCAGATGATGAAAATGAGGACGATCAGTCGCAAGAGGACGCGAAGCCGGTTGGGGATGCTGTTAGGGTTTCTGGGAAAGGGAGGGGAAGGAAGAGCCATTACAATGCGTTTGAATATGATGGGAACAGATATGATCTCGAGGATCCGGTACTTCTGGTTCCTGAGGACAAGGATCAAAAACCTTATGTGGCAATTATCAAGGATATTACTCAGAACAAAGATGGCATGATGGTCACTGGGCAGTGGTTTTATCGTCCCGAGGAAGCTGAAAGAAAGGGTGGTGGAAATTGGCAATCACATGATACTCGAGAGCTGTTTTATAGTTTCCACCGTGATCAGGTTCCTGCAGAATCTGTAATGCATAAATGCGTTGTGCATTTTGTTCCATTGCATAAGCAACTTCCAGTTCGGAAGCAACATCCTGGTTTTATTGTTCGAAAAGTGTACGACACAGTTGAAAAAAAACTTTGGAAGCTAACTGATAAGGACTATGAAGACTCTAAGCAGGAGGAAATTGATGAACTTGTTAAGAAGACCATGTCACGGTTGGGAGATCTTCCTGATATTGAGCCTGAAGATGCCCCAGCTGACCAGGAAGATCAATTGAAGACTAAAAGAAGTTTTAAAAGAAAAAATATATCTCCTCTTGATATTACAAGAGATGAATCAGAGGCAACCAGATACGATCACAGCTTAAAAGCTGAAACACCAGGAAGCTGTACAACTAATCGATCTGAGTACTACTCCATATTAGAAATATTTGACATTCTAACAGGTGAAACTCATCGTGATAAATGGTTGGAAAAACTTTTGGAGGGGGTTCAGTACGTATGTTATACTCCTGAGAAAACACGTGAAGATGATAGAGGACAAACTGCTGCTAATGGTGTTAGCCATGAAAATAAGAATCCGGAACCATCGATTGTAGCACAGAACAGTGCTAAGAGCGGCAAGTCTTTTCTCTGGCCAGATGCAGCAGTTCCAGCCATAACTGCTCTCGAGAAGGTGTCCAGTGATGCCCTTTCTGCTGATTTTCAGAAGTATAACCAAAAAATGCGGCAACTGGTATTCAATCTCAAGAATAATCGTTTACTAGCTCAACGGCTGTTAAATGGAGAGTTGGAGCCATCAAAAATCCTGAATATGTCACCCAATGAACTCAAGGATGGATTGACTGCTGAGGAGATGGCAGCAACTAAAAAGCCTGATGAGTCCGAGCGTATGCAGTTGGAGTGCATTGCCTGTGGTCATTCTTGGTACGCCTCTAGGGATGAACTATCTATGCTGACGATAGATGCGGCAACTAATTCTACAAAAAGTGTTGGCACCGCACCATGGGCAACTGCCAAATTTGAAGATGTGGAGAAGAGTCTACTCAGTCCCCGTGAACCCGAAAAAGCCACCGAGGACCTCTTCAAGAAAACGAGTGAAGCATACATGCCCGTATTGGATAGCCCGAAATCAAACAAGTCTAGAAAGGAAGATAACACAGAACCTGCTAAAAATGCACAGTAA 1752 43.95 MGNRRFAQVSTSDEEDEVPATKQQFSNSDDNLPVRRKRKKMKFIEEEEEELEEEGEERNRRSRRSRNKGEKEVEAYKQQADDENEDDQSQEDAKPVGDAVRVSGKGRGRKSHYNAFEYDGNRYDLEDPVLLVPEDKDQKPYVAIIKDITQNKDGMMVTGQWFYRPEEAERKGGGNWQSHDTRELFYSFHRDQVPAESVMHKCVVHFVPLHKQLPVRKQHPGFIVRKVYDTVEKKLWKLTDKDYEDSKQEEIDELVKKTMSRLGDLPDIEPEDAPADQEDQLKTKRSFKRKNISPLDITRDESEATRYDHSLKAETPGSCTTNRSEYYSILEIFDILTGETHRDKWLEKLLEGVQYVCYTPEKTREDDRGQTAANGVSHENKNPEPSIVAQNSAKSGKSFLWPDAAVPAITALEKVSSDALSADFQKYNQKMRQLVFNLKNNRLLAQRLLNGELEPSKILNMSPNELKDGLTAEEMAATKKPDESERMQLECIACGHSWYASRDELSMLTIDAATNSTKSVGTAPWATAKFEDVEKSLLSPREPEKATEDLFKKTSEAYMPVLDSPKSNKSRKEDNTEPAKNAQ 583
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 8715226 8721976 - CmoCh02G014880.1 Cmo02g01488 377085

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo02g01488 583 MobiDBLite consensus disorder prediction 373 391 - -
Cmo02g01488 583 MobiDBLite consensus disorder prediction 55 78 - -
Cmo02g01488 583 SMART mid_6 339 476 IPR003618 GO:0006351
Cmo02g01488 583 MobiDBLite consensus disorder prediction 264 284 - -
Cmo02g01488 583 MobiDBLite consensus disorder prediction 536 583 - -
Cmo02g01488 583 Pfam Transcription factor S-II (TFIIS), central domain 337 480 IPR003618 GO:0006351
Cmo02g01488 583 ProSiteProfiles BAH domain profile. 121 239 IPR001025 GO:0003682
Cmo02g01488 583 MobiDBLite consensus disorder prediction 566 583 - -
Cmo02g01488 583 MobiDBLite consensus disorder prediction 1 110 - -
Cmo02g01488 583 Pfam BAH domain 123 237 IPR001025 GO:0003682
Cmo02g01488 583 Gene3D - 333 468 IPR036575 GO:0006351
Cmo02g01488 583 MobiDBLite consensus disorder prediction 536 552 - -
Cmo02g01488 583 SUPERFAMILY Elongation factor TFIIS domain 2 405 467 IPR036575 GO:0006351
Cmo02g01488 583 CDD BAH_plant_3 103 248 - -
Cmo02g01488 583 SMART BAH_4 121 239 IPR001025 GO:0003682
Cmo02g01488 583 Coils Coil 66 86 - -
Cmo02g01488 583 PANTHER BROMO-ADJACENT HOMOLOGY (BAH) DOMAIN-CONTAINING PROTEIN 1 488 - -
Cmo02g01488 583 PANTHER BROMO-ADJACENT HOMOLOGY (BAH) DOMAIN-CONTAINING PROTEIN 485 579 - -
Cmo02g01488 583 Coils Coil 34 64 - -
Cmo02g01488 583 MobiDBLite consensus disorder prediction 31 46 - -
Cmo02g01488 583 ProSiteProfiles TFIIS central domain profile. 341 494 IPR003618 GO:0006351
Cmo02g01488 583 PANTHER BROMO-ADJACENT HOMOLOGY (BAH) DOMAIN-CONTAINING PROTEIN 1 488 - -
Cmo02g01488 583 PANTHER BROMO-ADJACENT HOMOLOGY (BAH) DOMAIN-CONTAINING PROTEIN 485 579 - -
Cmo02g01488 583 Gene3D - 104 325 IPR043151 -
Cmo02g01488 583 MobiDBLite consensus disorder prediction 366 391 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo02g01488 - - - csv:101218620 993.416
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo02g01488 Cmo15g01291 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo02g01488 Cmo-Chr2:8715226 Cmo10g00147 Cmo-Chr10:673801 7.13E-24 dispersed
Cmo02g01488 Cmo-Chr2:8715226 Cmo15g01291 Cmo-Chr15:8854091 0 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g322 . . . . . . . . . . Cma02g01453 Cma15g01226 Car02g01219 Car15g01106 . . Cpe05g00334 . . . . . . . . . . . . . . Cone8ag0305 . Cone6ag0779 Cone9ag0784 . Csa05g00281 Chy09g01228 . . . . . . . . . . Cmo02g01488 Cmo15g01291 . . . . . Cpe13g00157 Bhi12g00260 . . . . . . Cla01g00265 Cam01g0272 Cec01g0265 Cco01g0280 Clacu01g0272 Cmu01g0260 Cre09g2248 Lsi09g00260 . . Cme09g01763
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006093 0 1 1 0 0 1 1 1 1 1 1 1 2 1 1 1 1 4 3 1 1 1 1 1 1 1 1 4 4 1 39
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo02g01488 Cmo_Chr02 FPKM 24.14942 26.941605 21.458969 21.495152 14.113808 12.776971 14.636059 13.993573 13.47943 14.665948