Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo02g01494 ATGGATGGGAGGGACGGCATGGCATTGTCTGGTGGCTCTGCTTCTTACTACATACATAGGGGGGGAGGGGTTGGTGGCTCTGGATCAGGGCTGCCATCGGCTGGATCACATGCCTCCCCTGTATTCCGGCCAATGGCTAACCAGGGTGTTTTGTCTCACTCAAATCTCAGAGGCAACTCAGTTGGACCAACGTATGCTGTTGAGCCATCTCATTCCAATTACCTTCGTGGGATTAGTATGAATGTCTCACCTGGAGTGAACTCTGGTGAACCTGTGAAGAAAAAGAGGGGGAGGCCAAGGAAATATGCTCCGGATGGGCCGGTCTCATTGGGTCTGTCTCCCATGTCTGCTGGTTCTAAGCTCACTCCAGGGTCGAATTCGTCAACCCCGAAACAACGAAGAGGGCGGCCGCCTGGCTCTGGAAGGAAACAACAATTAGCTCTCCTTGGTGAGTGGATGAACAATTCAGCTGGACTAGCTTTTGCTCCACATGTCATTCACGTTGGAGCTGGAGAAGATATTGTAGATAAAGTATTGTCGTTTGCACAGCAGAGGCCAAGGGCTGTTTGCATCATGTCGGGCAATGGTACCGTTTCTTCTGTTACAGTACGCCAGCCTGCATCTACTGGCGTGAGCGTCACATATGAGGGTCATTTCCAGATATTGTGTTTGTCTGGTTCTTACTTGGTGGCTGAAGATGGTGGTCCTCGAAATAGGATGGGCGGTATTAGTGTTTCCCTCTCTAGTCCTGATGGTCATGTCATTGGTGGTGGAGTTGCCGTTCTTACAGCGGCTGGCCCTGTTCAGGTAGTTGCTTGTAGCTTTGTTTATGGCGCAAAGATCAAGAATAAGCAGGTCGCTGGTCTGAGAAGCAATGACGGTTCCGAAAATGATCATCATGATAATTTGGTTTCGCGGTCGAGTGCCCCATCTGCTCAAACATACAATCCTTCTGCAATTGGTGTTTGGCCTGGTTCCCGTTCAGTCGATGTGAGAAACCCTCATACTGGAATCGATTTGACACGAGGATGA 1032 50.1 MDGRDGMALSGGSASYYIHRGGGVGGSGSGLPSAGSHASPVFRPMANQGVLSHSNLRGNSVGPTYAVEPSHSNYLRGISMNVSPGVNSGEPVKKKRGRPRKYAPDGPVSLGLSPMSAGSKLTPGSNSSTPKQRRGRPPGSGRKQQLALLGEWMNNSAGLAFAPHVIHVGAGEDIVDKVLSFAQQRPRAVCIMSGNGTVSSVTVRQPASTGVSVTYEGHFQILCLSGSYLVAEDGGPRNRMGGISVSLSSPDGHVIGGGVAVLTAAGPVQVVACSFVYGAKIKNKQVAGLRSNDGSENDHHDNLVSRSSAPSAQTYNPSAIGVWPGSRSVDVRNPHTGIDLTRG 343
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 8744133 8747559 + CmoCh02G014940.1 Cmo02g01494 377091
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo02g01494 343 MobiDBLite consensus disorder prediction 289 343 - -
Cmo02g01494 343 MobiDBLite consensus disorder prediction 115 134 - -
Cmo02g01494 343 Gene3D - 163 290 - -
Cmo02g01494 343 PANTHER AT HOOK MOTIF DNA-BINDING FAMILY PROTEIN 1 343 - -
Cmo02g01494 343 SUPERFAMILY AF0104/ALDC/Ptd012-like 161 276 - -
Cmo02g01494 343 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 1 343 IPR039605 GO:0003680
Cmo02g01494 343 CDD DUF296 163 275 IPR005175 -
Cmo02g01494 343 Pfam Plants and Prokaryotes Conserved (PCC) domain 163 276 IPR005175 -
Cmo02g01494 343 ProSiteProfiles PPC domain profile profile. 158 295 IPR005175 -
Cmo02g01494 343 MobiDBLite consensus disorder prediction 304 321 - -
Cmo02g01494 343 MobiDBLite consensus disorder prediction 76 143 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo02g01494 Cmo-Chr2:8744133 Cmo08g00884 Cmo-Chr8:5731032 6.46E-85 dispersed
Cmo02g01394 Cmo-Chr2:8260276 Cmo02g01494 Cmo-Chr2:8744133 4.04E-42 transposed
Cmo15g01287 Cmo-Chr15:8807628 Cmo02g01494 Cmo-Chr2:8744133 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo02g01494 - - csv:101219973 612.453