Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo02g01497 ATGCTGAAGTTGCCGCGGCGGAAACGCTCGCCGGCGGCAACGAATCAGGAGAACGCGAATGATGTAGCGAATATTGACAATGACGAGACGGCGGCGGGGGTGAGAAAGGCGGCGGAAGCGAAAGTGGTGCTCTGTGTTTCCGGCATGACTTGCTCTGCTTGCGCTGTTTCAGTAGAGAATTCCATCAAACATCTTCCAGGCATTCTCGATGCTGCTATCGATTTCTTGAACGATAGGGCTCAAATCCGCTATCTCCCCAATCTCATCGATGAAGATTCAATAGTTAAAGCAATTGAAAATGCTGGATTTCAAGCTACGATATCGAAGGACAGCGCCGATCATCGATCGAGAGAAGTATGTCGAATCCGAGTAAATGGGATGGGCTGCAATTCTTGCTCTTCCATGGTAGAATCAGTTTTGGAAGAAATGTACGGCGTCCAAAAGACTCACATTGCTCTCTTCAATGGGGAAGCAGAAGTTCACTATGATCCAAAGGTCGTTAACTCCACTCAGTTCATTGTAGCCATACAAGACATTGGCTTTGATGCCTTACTTATAACCATTGGCGAACACATTAGCAAGATTGAGCTCAAGATCGATGGCATGCATAACGAAAACTCATCGACAAAAGTTAAAGAATCGCTTGAATCGGTTGTCGGAATCGAAGATGTCGATATCGACATGGGATTGACCAAAGTTACCATATCTTACAAGCCTGATATAACAGGACCAAGAACTTTCATTGAAGTGATCGAGTCGATCAAATCCGAGCATTTCAAGGCCACGATATATCCCGCAAATGTGGGTCGAGAAAATCGTAAGGAGAAAGAAATTAAACAGCACTATAAGTACTTCTTATGGAGCTCAGCTCTTTCTGTTCCTGTTTTCTTAACATCCATGGTGTTTATGTATATACCTGGAATTAAGCAGATTTTGGATATCAAAGTAGTCAATATGATGAATGTTGGACATCTTATCAAGTGGAATTTGTCCACTCCTGTCCAGTTCATCATAGGTTCAAGATTCTACATTGGATCATACAAAGCATTGCGCCGTGGTTCTGCCAACATGGATGTATTGATCACTTTGGGAACCAATGCAGCTTATTTCTATTCTGTTTATATTGTTCTAAGAGCAGCTACTTCCCCTGCTTTTGATGGGACAGATTTCTTTGAGACTAGCTCAATGCTGATCACTTTCATTCTACTTGGTAAGTATTTGGAGATTCTAGCTAAAGGAAAGACCTCTGAGGCCATTGCTAAGCTTAAGCACTTGGCGCCCGAGACCGCGACGCTCTTGACTCTAGATGGCCATGGAAATGTGATAAGTGAAGTAGAAATCAGCGGTGAGCTGATTCAGAAGAATGATGTTATTAAGATTACGCCTGGTGCGAAGGTAGCTTCCGATGGCCTCGTCGTCTGGGGCGAAAGTCATGTCAATGAGAGTATGATTACCGGAGAAGCGAAACCGGTAGCGAAAAGGACAGGCGACAAGGTAATAGGAGGAACTATGAATGAGAATGGAGTGTTGCATATTAAGGCAACACATGTTGGATCAGAGAGTTCACTAGCGCAAATCGTTCAACTCGTCGAATCGTCTCAGTTGGCGAAAGCTCCTATTCAGAAACTTGCAGACCATATCTCCAAGTATTTTGTGCCTCTGGTAATTTTGCTTTCTTTTCTCACTTGGATTGCCTGGTTTTTAGCTGGAAAGTTGCATTTGTATCCTAAGTCCTGGTTGCCTTCTTCAATGGACCGTTTTGAACTAGCTCTCCAATTTGGGATTTCTGTTATGGTCATAGCTTGCCCTTGTGCTCTTGGCCTTGCCACCCCGACCGCTGTGATGGTCGGGACCGGTGTCGGTGCATCTCAAGGTGTACTAATCAAAGGCGGCCAAGCTTTAGAATTTGCACATAAGGCGAGCTGCATTGTGTTTGATAAGACAGGAACGCTAACAGTTGGAAAGCCAGTGGTTGTAAATGTAAAACTAATGGACACTATAGTACTTGAAGAACTGCTTGAACTCACTGCTGCTACTGAGGTGAACAGTGAGCATCCAATAGCCAAGGCCATTGTTGAATATGCTAAGCAATTCAAGGAAGATAACCCCATTTGGCCTGAAGCTCAAGAGTTCATATCCATTCCTGGACATGGAGTGGAAGCCATTGTAAGGAACAAGAAAGTTGTGGTTGGAAACAAGAGCTTGATGATGAACAATGGCATAGAAATTCTTGGGGAAACGGAGAGCTTCCTTGTCGACGCCGAAGGTATGGCGAAAACCGCGGTTTTGGTGGCCGTAGATCGAACGGTGTCGGGAGTTATCGTGGTGTCGGATCCATTGAAACCAGGAGCCAAAGAGGTGATCTCCATTCTCAAATCTATGGAAGTAAAGAGCATAATGGTAACAGGTGACAATTGGGGGACTGCAAATTCCATTGCCAAAGAAGTTGGAATAGAAACGGTCATTGCAGAGGCCAAGCCTCAGCAGAAAGCAGAGGAAGTGAAGAATCTTCAGACGGCCGGGCACACGGTGGCAATGGTGGGAGACGGGATCAATGACTCGCCCGCCCTTGTAGCAGCCGATGTCGGGATGGCTATCGGAGCTGGCACAGACATCGCCATTGAGGCAGCAGACATTGTTCTTATGAAAAATGACTTACAAGATGTTATAACTGCCATTCATCTCTCAAGGAGAACTTTTGCTAGAATTCGCCTCAATTACATTTGGGCTCTTGGTTATAATCTTCTTGCCATTCCGATTGCCGCAGGCGTCTTGTTCCCTTCAACACGGTTTCGGCTACCACCGTGGATCGCCGGAGCTGCCATGGCTGCTTCTTCTGTTAGTGTGGTATGCAGTTCTTTGATGTTGAAGAAGTACAAGAGACCAAAGAAGCTTGATGAAATTGATATTCAAATGAAAGGAATAATAGTTCAATGA 2937 44.98 MLKLPRRKRSPAATNQENANDVANIDNDETAAGVRKAAEAKVVLCVSGMTCSACAVSVENSIKHLPGILDAAIDFLNDRAQIRYLPNLIDEDSIVKAIENAGFQATISKDSADHRSREVCRIRVNGMGCNSCSSMVESVLEEMYGVQKTHIALFNGEAEVHYDPKVVNSTQFIVAIQDIGFDALLITIGEHISKIELKIDGMHNENSSTKVKESLESVVGIEDVDIDMGLTKVTISYKPDITGPRTFIEVIESIKSEHFKATIYPANVGRENRKEKEIKQHYKYFLWSSALSVPVFLTSMVFMYIPGIKQILDIKVVNMMNVGHLIKWNLSTPVQFIIGSRFYIGSYKALRRGSANMDVLITLGTNAAYFYSVYIVLRAATSPAFDGTDFFETSSMLITFILLGKYLEILAKGKTSEAIAKLKHLAPETATLLTLDGHGNVISEVEISGELIQKNDVIKITPGAKVASDGLVVWGESHVNESMITGEAKPVAKRTGDKVIGGTMNENGVLHIKATHVGSESSLAQIVQLVESSQLAKAPIQKLADHISKYFVPLVILLSFLTWIAWFLAGKLHLYPKSWLPSSMDRFELALQFGISVMVIACPCALGLATPTAVMVGTGVGASQGVLIKGGQALEFAHKASCIVFDKTGTLTVGKPVVVNVKLMDTIVLEELLELTAATEVNSEHPIAKAIVEYAKQFKEDNPIWPEAQEFISIPGHGVEAIVRNKKVVVGNKSLMMNNGIEILGETESFLVDAEGMAKTAVLVAVDRTVSGVIVVSDPLKPGAKEVISILKSMEVKSIMVTGDNWGTANSIAKEVGIETVIAEAKPQQKAEEVKNLQTAGHTVAMVGDGINDSPALVAADVGMAIGAGTDIAIEAADIVLMKNDLQDVITAIHLSRRTFARIRLNYIWALGYNLLAIPIAAGVLFPSTRFRLPPWIAGAAMAASSVSVVCSSLMLKKYKRPKKLDEIDIQMKGIIVQ 978
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 8752694 8757356 - CmoCh02G014970.1 Cmo02g01497 377094
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo02g01497 978 Pfam haloacid dehalogenase-like hydrolase 642 861 - -
Cmo02g01497 978 SUPERFAMILY HMA, heavy metal-associated domain 188 255 IPR036163 GO:0046872
Cmo02g01497 978 Pfam E1-E2 ATPase 425 622 - -
Cmo02g01497 978 SUPERFAMILY HMA, heavy metal-associated domain 119 188 IPR036163 GO:0046872
Cmo02g01497 978 SUPERFAMILY Calcium ATPase, transmembrane domain M 392 926 IPR023298 -
Cmo02g01497 978 CDD HMA 196 262 IPR006121 GO:0046872
Cmo02g01497 978 Gene3D - 412 534 - -
Cmo02g01497 978 SFLD p-type atpase 626 899 IPR044492 -
Cmo02g01497 978 PANTHER ATP7, ISOFORM B 30 967 - -
Cmo02g01497 978 CDD P-type_ATPase_Cu-like 285 943 - -
Cmo02g01497 978 CDD HMA 122 183 IPR006121 GO:0046872
Cmo02g01497 978 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 397 929 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Cmo02g01497 978 PRINTS Copper-transporting ATPase 1 signature 41 66 - -
Cmo02g01497 978 PRINTS Copper-transporting ATPase 1 signature 67 90 - -
Cmo02g01497 978 PRINTS Copper-transporting ATPase 1 signature 96 116 - -
Cmo02g01497 978 PRINTS Copper-transporting ATPase 1 signature 142 163 - -
Cmo02g01497 978 ProSiteProfiles Heavy-metal-associated domain profile. 41 107 IPR006121 GO:0046872
Cmo02g01497 978 Gene3D - 651 726 IPR023299 GO:0000166
Cmo02g01497 978 Gene3D - 727 778 IPR023299 GO:0000166
Cmo02g01497 978 PRINTS P-type cation-transporting ATPase superfamily signature 480 494 - -
Cmo02g01497 978 PRINTS P-type cation-transporting ATPase superfamily signature 644 658 - -
Cmo02g01497 978 PRINTS P-type cation-transporting ATPase superfamily signature 772 783 - -
Cmo02g01497 978 PRINTS P-type cation-transporting ATPase superfamily signature 794 804 - -
Cmo02g01497 978 PRINTS P-type cation-transporting ATPase superfamily signature 847 866 - -
Cmo02g01497 978 PRINTS P-type cation-transporting ATPase superfamily signature 870 882 - -
Cmo02g01497 978 PANTHER COPPER-TRANSPORTING ATPASE HMA5-RELATED 30 967 - -
Cmo02g01497 978 TIGRFAM ATPase-IB_hvy: heavy metal translocating P-type ATPase 357 956 IPR027256 GO:0006812|GO:0016021|GO:0019829
Cmo02g01497 978 ProSiteProfiles Heavy-metal-associated domain profile. 119 185 IPR006121 GO:0046872
Cmo02g01497 978 SUPERFAMILY Calcium ATPase, transduction domain A 444 530 IPR008250 -
Cmo02g01497 978 Gene3D - 117 187 - -
Cmo02g01497 978 Gene3D - 33 113 - -
Cmo02g01497 978 SUPERFAMILY HAD-like 643 953 IPR036412 -
Cmo02g01497 978 Pfam Heavy-metal-associated domain 197 254 IPR006121 GO:0046872
Cmo02g01497 978 Pfam Heavy-metal-associated domain 46 103 IPR006121 GO:0046872
Cmo02g01497 978 Pfam Heavy-metal-associated domain 122 182 IPR006121 GO:0046872
Cmo02g01497 978 MobiDBLite consensus disorder prediction 1 24 - -
Cmo02g01497 978 Gene3D - 611 904 IPR023214 -
Cmo02g01497 978 ProSiteProfiles Heavy-metal-associated domain profile. 194 263 IPR006121 GO:0046872
Cmo02g01497 978 SUPERFAMILY HMA, heavy metal-associated domain 39 108 IPR036163 GO:0046872
Cmo02g01497 978 ProSitePatterns Heavy-metal-associated domain. 124 154 IPR017969 GO:0046872
Cmo02g01497 978 Gene3D - 194 263 - -
Cmo02g01497 978 CDD HMA 46 106 IPR006121 GO:0046872
Cmo02g01497 978 ProSitePatterns E1-E2 ATPases phosphorylation site. 646 652 IPR018303 -
Cmo02g01497 978 ProSitePatterns Heavy-metal-associated domain. 46 75 IPR017969 GO:0046872
Cmo02g01497 978 SFLD C1.7: P-type atpase like 626 899 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo02g00531 Cmo-Chr2:3007937 Cmo02g01497 Cmo-Chr2:8752694 0 dispersed
Cmo02g01497 Cmo-Chr2:8752694 Cmo07g01190 Cmo-Chr7:6446516 0 dispersed
Cmo02g01497 Cmo-Chr2:8752694 Cmo03g00234 Cmo-Chr3:3602692 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo02g01497 K17686 - csv:101220448 1663.28