Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo02g01499 ATGGAGAACAGTACCTTGACTGGCTTGTTGAAGAAGGCAGCTTCTCAATTTCCTCACCGCCGGGCTCTCTCAGTCGCCGGAAAATTAGACCTGACACATGAGCGGTTGCAGGAACTCATCGAACATGCCGCTTCTCGCTTGGTGGATGCCGGTGTTAATGCCGGAGATGTGGTGACGCTCACCTTCCCCAATACTGTTGAGTTTGTGATCACGTTTTTGGCCATAATCCGCTGCCGAGCCACCGCTGCACCATTGAATTCGGCTTACACGGCTGAGGAGTTCGAGTTTTACTTATCGGACTCGGAATCGAAACTACTCCTTACATCGAAAGAAGGAATTCCATCGGCACAAACCGCCGCATCGAAGCTCAATATTCCTCAAGTAAATGTGAATCTGGCGAGCGGCGATGCATTTCTCGATTTCTTTCCGTCCCCAAACGAATCGAAGGTGAATATGTCGGAAATCGTTAACGATCCGTCCGACGCTGCGCTATTCCTTCACACCTCCGGCACCACCAGCCGGCCGAAGGGCGTACCGCTAACTCAACAAAACCTCGCCGCTTCTGTTCAGAACATCAAATCGGTGTACAAACTCTCTGAGTCCGACTCGACCGTGCTCGTTCTTCCGTTGTTTCACGTTCACGGACTAATGGCGGGGTTGCTATCATCACTGATCTCCGGAGCCGCTGTGACTCTTCCAGCTGCCGGACGCTTCTCTGCTTCAACGTTTTGGTCCGATATGGTCGCCTATAACGCGACGTGGTACACTGCGGTCCCTACGATTCACCAAATCATACTAGACCGCCATTTCAGTAAGCCTGAACCGTCGTATCCGAAGCTCCGGTTTATTCGGAGCTGTAGCGCGTCGCTTGCACCATCGATTTTGGAACGATTGGAAAAATCATTCGGAGCTCCGGTTCTCGAGTCTTACGCGATGACCGAAGCGTCGCATCTAATGGCGTCCAATCCATTACCGGAGGACGGCGTGCACAAAGCCGGATCGGTAGGGAAGCCGATCGGTCAAGAAATGGCGATTCTGGATGAAAACGGCGTGATACAACCGGAAGGTGTTAAAGGAGAAGTGTGCATTAGAGGACCAAATGTAACGAAGGGATACAAAAACAATCCAGAGGCTAACAAGGCCACCTTCTCATTCGGATGGTTCCACACCGGCGATATCGGGTTCTTCGACTCCGACGGATACTTGCATCTCGTCGGCCGGATCAAGGAGCTCATTAACCGTGGAGGTGAGAAGATCTCTCCAATAGAAGTAGACGCCGTGCTTCTTTCTCACTCCGACATTGCTCAGGCCGTCGCCTTCGGAGTCCCCGACGAAAAATACGGCGAAGAGATCAATTGCGCCGTAATTCCGAGGGAGGGAAGCTCGATCGACGAAGCGGAGGTGCTGCGCTTTTGCAAGAAAAACCTTGCGTCCTTCAAGATTCCGAAGAAGCTCTCAGGATTGGAGCTTGTTGCAGAATTTCTTTCCCCTGTGCTGATTCTTGCTGGTAAAATGAACGTGGAGAGTCCAAACGAGAAGAAAGAGTATGCTGCTGATCTTTCCTCCATACAGGAGGCCAGGATAAGAATCCAACCTTTCGCCCATCAAACCCCAGTTTTGACCTCTGAGAGTATTAATGCTGCTTCAGGAAAACAGCTTTTCTTCAAATGTGAATGTTTCCAGAAGGGAGGTGCCTGCAATGCTATTTATTCACTTGATGATGAACAAGCTGCTAAAGGGGTTGTGACACACAGCAGTGGCAACCATGCTGCAGCTTTGTCTTTGGCTGCAAAACTGCGAGGGATCCCTGCATATATAGTTATACCAGAAAATGCTCCAAAATGTAAAGTTGAAAATGTGATACGTTATGGTGGTCAGGTTATTCGGAGCAAAGCCACAATACAGTCGAGAGAGATGGTCGCCTCGAAGGTTATGCAAGAAACTGGTGCGTTACTTATACATCCATATAATGATGGACGCATAATAAGCGGGCAAGGTACTATCTCGTTGGAGCTTCTAGAACAAGTCCCACAATTGGACACTTTAATCGTCCCCATAAGTGGTGGTGGTTTGATATCTGGAATTTCTGTGGCTGCAAAAGCCATCAATCCTGCCATCCGGATTTTTGCAGCAGAACCTAAGGGAGCTAATGATGCAGCCTTGTCAAAAGCAGCTGGTGAGATAGTAATATTGGCCGAGACCAACACCGTAGCCGATGGTCTTCGAGCTTTTCTCGGTGACCTTACCTGGCCGATAGTACGAGATTTGGTGGACGATATAATAACTGTAGAGGACTCGGAGATAGTCGAAGCAATGAGACTTTGTCTTGAAATACTGAAAGTTGTTGTGGAACCTAGTGGAGCAATAGGCCTTGCTGCTGTTCTCTCCGACAGTTTCAAGCAAAACCCTTCATGGAAGGACTGCAACCGCATTGGCATTATACTTTCAGGAGGTAACGTTGACCTTGGCATGCTATGGAATTCATATGAAAAATGA 2496 49.08 MENSTLTGLLKKAASQFPHRRALSVAGKLDLTHERLQELIEHAASRLVDAGVNAGDVVTLTFPNTVEFVITFLAIIRCRATAAPLNSAYTAEEFEFYLSDSESKLLLTSKEGIPSAQTAASKLNIPQVNVNLASGDAFLDFFPSPNESKVNMSEIVNDPSDAALFLHTSGTTSRPKGVPLTQQNLAASVQNIKSVYKLSESDSTVLVLPLFHVHGLMAGLLSSLISGAAVTLPAAGRFSASTFWSDMVAYNATWYTAVPTIHQIILDRHFSKPEPSYPKLRFIRSCSASLAPSILERLEKSFGAPVLESYAMTEASHLMASNPLPEDGVHKAGSVGKPIGQEMAILDENGVIQPEGVKGEVCIRGPNVTKGYKNNPEANKATFSFGWFHTGDIGFFDSDGYLHLVGRIKELINRGGEKISPIEVDAVLLSHSDIAQAVAFGVPDEKYGEEINCAVIPREGSSIDEAEVLRFCKKNLASFKIPKKLSGLELVAEFLSPVLILAGKMNVESPNEKKEYAADLSSIQEARIRIQPFAHQTPVLTSESINAASGKQLFFKCECFQKGGACNAIYSLDDEQAAKGVVTHSSGNHAAALSLAAKLRGIPAYIVIPENAPKCKVENVIRYGGQVIRSKATIQSREMVASKVMQETGALLIHPYNDGRIISGQGTISLELLEQVPQLDTLIVPISGGGLISGISVAAKAINPAIRIFAAEPKGANDAALSKAAGEIVILAETNTVADGLRAFLGDLTWPIVRDLVDDIITVEDSEIVEAMRLCLEILKVVVEPSGAIGLAAVLSDSFKQNPSWKDCNRIGIILSGGNVDLGMLWNSYEK 831
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 8761414 8767112 + CmoCh02G014990.1 Cmo02g01499 377096

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo02g01499 831 PANTHER OXALATE--COA LIGASE-LIKE 3 485 - -
Cmo02g01499 831 SUPERFAMILY Acetyl-CoA synthetase-like 4 485 - -
Cmo02g01499 831 Gene3D - 408 496 IPR045851 -
Cmo02g01499 831 Pfam AMP-binding enzyme 11 414 IPR000873 -
Cmo02g01499 831 Gene3D - 529 821 IPR036052 -
Cmo02g01499 831 Pfam Pyridoxal-phosphate dependent enzyme 531 817 IPR001926 -
Cmo02g01499 831 Gene3D - 564 656 IPR036052 -
Cmo02g01499 831 ProSitePatterns Putative AMP-binding domain signature. 165 176 IPR020845 -
Cmo02g01499 831 CDD Thr-dehyd 520 821 - -
Cmo02g01499 831 SUPERFAMILY Tryptophan synthase beta subunit-like PLP-dependent enzymes 520 825 IPR036052 -
Cmo02g01499 831 CDD FACL_fum10p_like 18 485 IPR045310 GO:0016874
Cmo02g01499 831 PANTHER ACYL-COA SYNTHETASE 3 485 - -
Cmo02g01499 831 Pfam AMP-binding enzyme C-terminal domain 423 485 IPR025110 -
Cmo02g01499 831 Gene3D - 1 407 IPR042099 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo02g01499 K22133 AAE3; oxalate---CoA ligase [EC:6.2.1.8] - csv:101220920 870.922
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo02g01499 Cmo-Chr2:8761414 Cmo15g01155 Cmo-Chr15:8077062 0 dispersed
Cmo07g00915 Cmo-Chr7:4381972 Cmo02g01499 Cmo-Chr2:8761414 1.85E-32 dispersed
Cmo02g01499 Cmo-Chr2:8761414 Cmo09g00069 Cmo-Chr9:306661 2.99E-52 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g336 . . . . . . . Bma14g00071 . . Cma02g01464 . Car02g01229 . . . Cpe05g00325 . . . . . . . . . . . . . . . . . Cone9ag0773 . Csa05g00293 Chy09g01213 . Blo03g00336 . . . . . . . . Cmo02g01499 . . . . . . . Bhi12g00238 . . Lac11g2107 Hepe06g1557 . Lcy12g1663 Cla01g00275 Cam01g0285 Cec01g0278 Cco01g0291 Clacu01g0284 Cmu01g0271 Cre09g2237 Lsi09g00272 . . Cme09g01750
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002220 2 2 3 3 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 1 2 2 2 2 2 3 3 2 63
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo02g01499 Cmo_Chr02 FPKM 82.835022 92.638313 79.525162 81.914772 106.704559 102.181419 110.081741 126.740112 131.166656 139.438766
Cmo02g01499 Cmo_Chr15 FPKM 53.969357 59.146435 47.99194 61.194866 66.689354 59.104713 68.290321 70.325073 76.954384 77.104935